RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 FAM45AQ8TCE6 357 aa11.24□□□□□ -0.61
UPF3B-204ENST00000619445 FBXL8Q96CD0 374 aa11.24□□□□□ -0.61
UPF3B-204ENST00000619445 SNF8Q96H20 258 aa11.24□□□□□ -0.61
UPF3B-204ENST00000619445 PDLIM5Q96HC4 596 aaKnown RBP11.24□□□□□ -0.61
UPF3B-204ENST00000619445 NDNQ99608 321 aa11.24□□□□□ -0.61
UPF3B-204ENST00000619445 ATG10Q9H0Y0 220 aa11.24□□□□□ -0.61
UPF3B-204ENST00000619445 CHST11Q9NPF2 352 aa11.24□□□□□ -0.61
UPF3B-204ENST00000619445 PPANQ9NQ55 473 aaKnown RBP11.24□□□□□ -0.61
UPF3B-204ENST00000619445 HCN3Q9P1Z3 774 aa11.24□□□□□ -0.61
UPF3B-204ENST00000619445 ADAMTS6Q9UKP5 1117 aa11.24□□□□□ -0.61
UPF3B-204ENST00000619445 SNX12Q9UMY4 172 aa11.24□□□□□ -0.61
UPF3B-204ENST00000619445 VWA7Q9Y334 891 aa11.24□□□□□ -0.61
UPF3B-204ENST00000619445 NAALAD2Q9Y3Q0 740 aa11.24□□□□□ -0.61
UPF3B-204ENST00000619445 FEZF1A0PJY2 475 aa11.23□□□□□ -0.61
UPF3B-204ENST00000619445 SGK494L7N484 410 aa11.23□□□□□ -0.61
UPF3B-204ENST00000619445 NDUFS4O43181 175 aa11.23□□□□□ -0.61
UPF3B-204ENST00000619445 OR1F1O43749 312 aa11.23□□□□□ -0.61
UPF3B-204ENST00000619445 RDH16O75452 317 aa11.23□□□□□ -0.61
UPF3B-204ENST00000619445 UNC5CO95185 931 aa11.23□□□□□ -0.61
UPF3B-204ENST00000619445 AHSGP02765 367 aa11.23□□□□□ -0.61
UPF3B-204ENST00000619445 ALOX12P18054 663 aa11.23□□□□□ -0.61
UPF3B-204ENST00000619445 COL8A1P27658 744 aa11.23□□□□□ -0.61
UPF3B-204ENST00000619445 HPDP32754 393 aaPredicted RBP11.23□□□□□ -0.61
UPF3B-204ENST00000619445 CSHL1Q14406 222 aa11.23□□□□□ -0.61
UPF3B-204ENST00000619445 PAPD4Q6PIY7 484 aaKnown RBP11.23□□□□□ -0.61
UPF3B-204ENST00000619445 LANCL3Q6ZV70 420 aa11.23□□□□□ -0.61
UPF3B-204ENST00000619445 AGGF1Q8N302 714 aaeCLIP11.23□□□□□ -0.61
UPF3B-204ENST00000619445 ZNF808Q8N4W9 903 aaPredicted RBP11.23□□□□□ -0.61
UPF3B-204ENST00000619445 KCT2Q8NC54 265 aa11.23□□□□□ -0.61
UPF3B-204ENST00000619445 ARMC2Q8NEN0 867 aa11.23□□□□□ -0.61
UPF3B-204ENST00000619445 ZCCHC10Q8TBK6 192 aa11.23□□□□□ -0.61
UPF3B-204ENST00000619445 THAP3Q8WTV1 239 aaPredicted RBP11.23□□□□□ -0.61
UPF3B-204ENST00000619445 ALKBH8Q96BT7 664 aaKnown RBP11.23□□□□□ -0.61
UPF3B-204ENST00000619445 TBC1D20Q96BZ9 403 aa11.23□□□□□ -0.61
UPF3B-204ENST00000619445 MOCOSQ96EN8 888 aa11.23□□□□□ -0.61
UPF3B-204ENST00000619445 ZFP69BQ9UJL9 534 aa11.23□□□□□ -0.61
UPF3B-204ENST00000619445 CROCCQ5TZA2 2017 aa11.23□□□□□ -0.61
UPF3B-204ENST00000619445 PKDREJQ9NTG1 2253 aa11.23□□□□□ -0.61
UPF3B-204ENST00000619445 TRGV8A0A0C4DH27 118 aa11.22□□□□□ -0.61
UPF3B-204ENST00000619445 PSMD12O00232 456 aaPredicted RBP11.22□□□□□ -0.61
UPF3B-204ENST00000619445 GALR3O60755 368 aaPredicted RBP11.22□□□□□ -0.61
UPF3B-204ENST00000619445 TSPAN12O95859 305 aa11.22□□□□□ -0.61
UPF3B-204ENST00000619445 FHP07954 510 aa11.22□□□□□ -0.61
UPF3B-204ENST00000619445 CELA2AP08217 269 aa11.22□□□□□ -0.61
UPF3B-204ENST00000619445 AGAP20933 346 aa11.22□□□□□ -0.61
UPF3B-204ENST00000619445 GSTM2P28161 218 aa11.22□□□□□ -0.61
UPF3B-204ENST00000619445 EEF1DP29692 281 aaKnown RBP11.22□□□□□ -0.61
UPF3B-204ENST00000619445 CA7P43166 264 aa11.22□□□□□ -0.61
UPF3B-204ENST00000619445 HNMTP50135 292 aa11.22□□□□□ -0.61
UPF3B-204ENST00000619445 CDKN2DP55273 166 aa11.22□□□□□ -0.61
UPF3B-204ENST00000619445 KCNK10P57789 538 aa11.22□□□□□ -0.61
UPF3B-204ENST00000619445 OR4D2P58180 307 aa11.22□□□□□ -0.61
UPF3B-204ENST00000619445 TIAL1Q01085 375 aaKnown RBP eCLIP11.22□□□□□ -0.61
UPF3B-204ENST00000619445 RHAGQ02094 409 aa11.22□□□□□ -0.61
UPF3B-204ENST00000619445 USP10Q14694 798 aaKnown RBP11.22□□□□□ -0.61
UPF3B-204ENST00000619445 PHKG1Q16816 387 aa11.22□□□□□ -0.61
UPF3B-204ENST00000619445 BBS9Q3SYG4 887 aa11.22□□□□□ -0.61
UPF3B-204ENST00000619445 SFT2D3Q587I9 215 aa11.22□□□□□ -0.61
UPF3B-204ENST00000619445 C1QL3Q5VWW1 255 aa11.22□□□□□ -0.61
UPF3B-204ENST00000619445 XKRXQ6PP77 449 aa11.22□□□□□ -0.61
UPF3B-204ENST00000619445 PRSS41Q7RTY9 318 aa11.22□□□□□ -0.61
UPF3B-204ENST00000619445 EID3Q8N140 333 aa11.22□□□□□ -0.61
UPF3B-204ENST00000619445 NKAPQ8N5F7 415 aaKnown RBP11.22□□□□□ -0.61
UPF3B-204ENST00000619445 TTLQ8NG68 377 aa11.22□□□□□ -0.61
UPF3B-204ENST00000619445 NT5CQ8TCD5 201 aa11.22□□□□□ -0.61
UPF3B-204ENST00000619445 SLC5A11Q8WWX8 675 aa11.22□□□□□ -0.61
UPF3B-204ENST00000619445 MARVELD3Q96A59 401 aa11.22□□□□□ -0.61
UPF3B-204ENST00000619445 VPS39Q96JC1 886 aa11.22□□□□□ -0.61
UPF3B-204ENST00000619445 SEC16BQ96JE7 1060 aa11.22□□□□□ -0.61
UPF3B-204ENST00000619445 AIF1LQ9BQI0 150 aa11.22□□□□□ -0.61
UPF3B-204ENST00000619445 PELI2Q9HAT8 420 aa11.22□□□□□ -0.61
UPF3B-204ENST00000619445 NSMCE4AQ9NXX6 385 aa11.22□□□□□ -0.61
UPF3B-204ENST00000619445 DYRK1BQ9Y463 629 aa11.22□□□□□ -0.61
UPF3B-204ENST00000619445 KCNE2Q9Y6J6 123 aa11.22□□□□□ -0.61
UPF3B-204ENST00000619445 GTF3C1Q12789 2109 aa11.22□□□□□ -0.61
UPF3B-204ENST00000619445 APCP25054 2843 aa11.22□□□□□ -0.61
UPF3B-204ENST00000619445 A0A088AWK7 358 aa11.21□□□□□ -0.61
UPF3B-204ENST00000619445 PRSS44E7EML9 344 aa11.21□□□□□ -0.61
UPF3B-204ENST00000619445 CCL21O00585 134 aa11.21□□□□□ -0.61
UPF3B-204ENST00000619445 LCMT2O60294 686 aaKnown RBP11.21□□□□□ -0.61
UPF3B-204ENST00000619445 RNH1P13489 461 aaKnown RBP11.21□□□□□ -0.61
UPF3B-204ENST00000619445 ZNF10P21506 573 aaPredicted RBP11.21□□□□□ -0.61
UPF3B-204ENST00000619445 GABRB3P28472 473 aa11.21□□□□□ -0.61
UPF3B-204ENST00000619445 PTGER4P35408 488 aa11.21□□□□□ -0.61
UPF3B-204ENST00000619445 SCTRP47872 440 aa11.21□□□□□ -0.61
UPF3B-204ENST00000619445 SMSP52788 366 aa11.21□□□□□ -0.61
UPF3B-204ENST00000619445 ARL4CP56559 192 aa11.21□□□□□ -0.61
UPF3B-204ENST00000619445 CDKL1Q00532 357 aa11.21□□□□□ -0.61
UPF3B-204ENST00000619445 TUBA3CQ13748 450 aa11.21□□□□□ -0.61
UPF3B-204ENST00000619445 RBM20Q5T481 1227 aaKnown RBP11.21□□□□□ -0.61
UPF3B-204ENST00000619445 TEDDM1Q5T9Z0 273 aa11.21□□□□□ -0.61
UPF3B-204ENST00000619445 HECTD2Q5U5R9 776 aa11.21□□□□□ -0.61
UPF3B-204ENST00000619445 SP5Q6BEB4 398 aaPredicted RBP11.21□□□□□ -0.61
UPF3B-204ENST00000619445 TUBA3EQ6PEY2 450 aa11.21□□□□□ -0.61
UPF3B-204ENST00000619445 MBOAT1Q6ZNC8 495 aa11.21□□□□□ -0.61
UPF3B-204ENST00000619445 QSOX2Q6ZRP7 698 aa11.21□□□□□ -0.61
UPF3B-204ENST00000619445 PDSS2Q86YH6 399 aa11.21□□□□□ -0.61
UPF3B-204ENST00000619445 BEST3Q8N1M1 668 aa11.21□□□□□ -0.61
UPF3B-204ENST00000619445 SLC35F6Q8N357 371 aa11.21□□□□□ -0.61
UPF3B-204ENST00000619445 ZNF740Q8NDX6 193 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms