RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 SLITRK5O94991 958 aa12.16□□□□□ -0.46
LIG1-221ENST00000613670 EIF2DP41214 584 aaKnown RBP12.16□□□□□ -0.46
LIG1-221ENST00000613670 MAGEA11P43364 429 aa12.16□□□□□ -0.46
LIG1-221ENST00000613670 MAPK8P45983 427 aa12.16□□□□□ -0.46
LIG1-221ENST00000613670 SLC11A1P49279 550 aa12.16□□□□□ -0.46
LIG1-221ENST00000613670 STK19P49842 368 aaPredicted RBP12.16□□□□□ -0.46
LIG1-221ENST00000613670 RORCP51449 518 aa12.16□□□□□ -0.46
LIG1-221ENST00000613670 MANFP55145 182 aaKnown RBP12.16□□□□□ -0.46
LIG1-221ENST00000613670 SRP54P61011 504 aaKnown RBP12.16□□□□□ -0.46
LIG1-221ENST00000613670 CRTC2Q53ET0 693 aaPredicted RBP12.16□□□□□ -0.46
LIG1-221ENST00000613670 LIPKQ5VXJ0 399 aa12.16□□□□□ -0.46
LIG1-221ENST00000613670 LRRC70Q7Z2Q7 622 aa12.16□□□□□ -0.46
LIG1-221ENST00000613670 HOMEZQ8IX15 550 aa12.16□□□□□ -0.46
LIG1-221ENST00000613670 ALOXE3Q9BYJ1 711 aa12.16□□□□□ -0.46
LIG1-221ENST00000613670 SEMA3GQ9NS98 782 aa12.16□□□□□ -0.46
LIG1-221ENST00000613670 TMEFF2Q9UIK5 374 aaPredicted RBP12.16□□□□□ -0.46
LIG1-221ENST00000613670 GSTK1Q9Y2Q3 226 aa12.16□□□□□ -0.46
LIG1-221ENST00000613670 HSPE1-MOB4S4R3N1 261 aa12.16□□□□□ -0.46
LIG1-221ENST00000613670 DOCK1Q14185 1865 aa12.16□□□□□ -0.46
LIG1-221ENST00000613670 PTHP01270 115 aa12.16□□□□□ -0.46
LIG1-221ENST00000613670 FHP07954 510 aa12.16□□□□□ -0.46
LIG1-221ENST00000613670 PSKH1P11801 424 aa12.16□□□□□ -0.46
LIG1-221ENST00000613670 ZNF24P17028 368 aa12.16□□□□□ -0.46
LIG1-221ENST00000613670 RPS13P62277 151 aaKnown RBP12.16□□□□□ -0.46
LIG1-221ENST00000613670 HSPB3Q12988 150 aa12.16□□□□□ -0.46
LIG1-221ENST00000613670 TARDBPQ13148 414 aaKnown RBP eCLIP12.16□□□□□ -0.461e-7■■■■□ 25.2
LIG1-221ENST00000613670 DCST1Q5T197 706 aa12.16□□□□□ -0.46
LIG1-221ENST00000613670 PNCKQ6P2M8 343 aa12.16□□□□□ -0.46
LIG1-221ENST00000613670 THOC6Q86W42 341 aaKnown RBP12.16□□□□□ -0.46
LIG1-221ENST00000613670 RNF130Q86XS8 419 aa12.16□□□□□ -0.46
LIG1-221ENST00000613670 TCEANCQ8N8B7 351 aa12.16□□□□□ -0.46
LIG1-221ENST00000613670 GGHQ92820 318 aa12.16□□□□□ -0.46
LIG1-221ENST00000613670 POLR2J3Q9H1A7 115 aaKnown RBP12.16□□□□□ -0.46
LIG1-221ENST00000613670 MMP28Q9H239 520 aa12.16□□□□□ -0.46
LIG1-221ENST00000613670 FAM83DQ9H4H8 585 aa12.16□□□□□ -0.46
LIG1-221ENST00000613670 DUSP21Q9H596 190 aa12.16□□□□□ -0.46
LIG1-221ENST00000613670 ZNF639Q9UID6 485 aa12.16□□□□□ -0.46
LIG1-221ENST00000613670 PCDHB11Q9Y5F2 797 aa12.16□□□□□ -0.46
LIG1-221ENST00000613670 TTC34A8MYJ7 566 aa12.15□□□□□ -0.46
LIG1-221ENST00000613670 SLC28A2O43868 658 aa12.15□□□□□ -0.46
LIG1-221ENST00000613670 PRSS23O95084 383 aa12.15□□□□□ -0.46
LIG1-221ENST00000613670 PTTG1O95997 202 aa12.15□□□□□ -0.46
LIG1-221ENST00000613670 NR2F1P10589 423 aa12.15□□□□□ -0.46
LIG1-221ENST00000613670 GJA1P17302 382 aa12.15□□□□□ -0.46
LIG1-221ENST00000613670 BDKRB1P46663 353 aa12.15□□□□□ -0.46
LIG1-221ENST00000613670 IL18Q14116 193 aa12.15□□□□□ -0.46
LIG1-221ENST00000613670 SNAPC1Q16533 368 aa12.15□□□□□ -0.46
LIG1-221ENST00000613670 SETMARQ53H47 684 aaPredicted RBP12.15□□□□□ -0.46
LIG1-221ENST00000613670 EEF1AKMT2Q5JPI9 291 aaKnown RBP12.15□□□□□ -0.46
LIG1-221ENST00000613670 GPRC6AQ5T6X5 926 aa12.15□□□□□ -0.46
LIG1-221ENST00000613670 TUBA3EQ6PEY2 450 aa12.15□□□□□ -0.46
LIG1-221ENST00000613670 ENTHD1Q8IYW4 607 aa12.15□□□□□ -0.46
LIG1-221ENST00000613670 APCDD1Q8J025 514 aa12.15□□□□□ -0.46
LIG1-221ENST00000613670 DPF3Q92784 378 aa12.15□□□□□ -0.46
LIG1-221ENST00000613670 MS4A4AQ96JQ5 239 aa12.15□□□□□ -0.46
LIG1-221ENST00000613670 PTPN18Q99952 460 aa12.15□□□□□ -0.46
LIG1-221ENST00000613670 SEC14L3Q9UDX4 400 aa12.15□□□□□ -0.46
LIG1-221ENST00000613670 SNX7Q9UNH6 387 aa12.15□□□□□ -0.46
LIG1-221ENST00000613670 IFT52Q9Y366 437 aa12.15□□□□□ -0.46
LIG1-221ENST00000613670 POLR2AP24928 1970 aaKnown RBP12.15□□□□□ -0.46
LIG1-221ENST00000613670 PDE9AO76083 593 aa12.15□□□□□ -0.46
LIG1-221ENST00000613670 HOXD8P13378 290 aaPredicted RBP12.15□□□□□ -0.46
LIG1-221ENST00000613670 GABRR2P28476 465 aa12.15□□□□□ -0.46
LIG1-221ENST00000613670 SOX3P41225 446 aa12.15□□□□□ -0.46
LIG1-221ENST00000613670 CASP3P42574 277 aa12.15□□□□□ -0.46
LIG1-221ENST00000613670 RPS7P62081 194 aaKnown RBP12.15□□□□□ -0.46
LIG1-221ENST00000613670 RPS26P62854 115 aaKnown RBP12.15□□□□□ -0.46
LIG1-221ENST00000613670 ARF5P84085 180 aa12.15□□□□□ -0.46
LIG1-221ENST00000613670 RNASE12Q5GAN4 147 aaKnown RBP12.15□□□□□ -0.46
LIG1-221ENST00000613670 SERPINA13PQ6UXR4 307 aa12.15□□□□□ -0.46
LIG1-221ENST00000613670 NRARPQ7Z6K4 114 aa12.15□□□□□ -0.46
LIG1-221ENST00000613670 MSRB3Q8IXL7 192 aa12.15□□□□□ -0.46
LIG1-221ENST00000613670 RAB8BQ92930 207 aa12.15□□□□□ -0.46
LIG1-221ENST00000613670 FKBP10Q96AY3 582 aa12.15□□□□□ -0.46
LIG1-221ENST00000613670 BCL7BQ9BQE9 202 aa12.15□□□□□ -0.46
LIG1-221ENST00000613670 IRF2BPLQ9H1B7 796 aa12.15□□□□□ -0.46
LIG1-221ENST00000613670 TRIM45Q9H8W5 580 aaPredicted RBP12.15□□□□□ -0.46
LIG1-221ENST00000613670 TBC1D17Q9HA65 648 aa12.15□□□□□ -0.46
LIG1-221ENST00000613670 ZNF282Q9UDV7 671 aaPredicted RBP12.15□□□□□ -0.46
LIG1-221ENST00000613670 PCNTO95613 3336 aa12.15□□□□□ -0.46
LIG1-221ENST00000613670 MYO7AQ13402 2215 aa12.15□□□□□ -0.47
LIG1-221ENST00000613670 IGLV3-10A0A075B6K4 115 aa12.15□□□□□ -0.47
LIG1-221ENST00000613670 A0A0G2JN53 185 aa12.15□□□□□ -0.47
LIG1-221ENST00000613670 FAM47E-STBD1D6RA91 191 aa12.15□□□□□ -0.47
LIG1-221ENST00000613670 TLR4O00206 839 aa12.15□□□□□ -0.47
LIG1-221ENST00000613670 SGTAO43765 313 aa12.15□□□□□ -0.47
LIG1-221ENST00000613670 EOMESO95936 686 aa12.15□□□□□ -0.47
LIG1-221ENST00000613670 CD72P21854 359 aa12.15□□□□□ -0.47
LIG1-221ENST00000613670 BUD31P41223 144 aaPredicted RBP12.15□□□□□ -0.47
LIG1-221ENST00000613670 RGS6P49758 472 aa12.15□□□□□ -0.47
LIG1-221ENST00000613670 CXCR4P61073 352 aa12.15□□□□□ -0.47
LIG1-221ENST00000613670 SLC14A1Q13336 389 aa12.15□□□□□ -0.47
LIG1-221ENST00000613670 DOC2AQ14183 400 aa12.15□□□□□ -0.47
LIG1-221ENST00000613670 CLLU1OSQ5K130 101 aa12.15□□□□□ -0.47
LIG1-221ENST00000613670 C10orf111Q8N326 155 aa12.15□□□□□ -0.47
LIG1-221ENST00000613670 LMNTD1Q8N9Z9 388 aa12.15□□□□□ -0.47
LIG1-221ENST00000613670 PJA1Q8NG27 643 aa12.15□□□□□ -0.47
LIG1-221ENST00000613670 PLD4Q96BZ4 506 aa12.15□□□□□ -0.47
LIG1-221ENST00000613670 TRIB3Q96RU7 358 aa12.15□□□□□ -0.47
LIG1-221ENST00000613670 ANKHQ9HCJ1 492 aa12.15□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms