RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 KIAA0040Q15053 153 aa14□□□□□ -0.17
VRK3-212ENST00000596814 GSTA3Q16772 222 aa14□□□□□ -0.17
VRK3-212ENST00000596814 SNAP47Q5SQN1 464 aa14□□□□□ -0.17
VRK3-212ENST00000596814 DEPDC1Q5TB30 811 aa14□□□□□ -0.17
VRK3-212ENST00000596814 ACSM2BQ68CK6 577 aa14□□□□□ -0.17
VRK3-212ENST00000596814 TMEM71Q6P5X7 295 aa14□□□□□ -0.17
VRK3-212ENST00000596814 FOXR1Q6PIV2 292 aa14□□□□□ -0.17
VRK3-212ENST00000596814 C6orf89Q6UWU4 347 aa14□□□□□ -0.17
VRK3-212ENST00000596814 PRSS42Q7Z5A4 293 aa14□□□□□ -0.17
VRK3-212ENST00000596814 CPSF7Q8N684 471 aaKnown RBP14□□□□□ -0.17
VRK3-212ENST00000596814 DPYSL5Q9BPU6 564 aa14□□□□□ -0.17
VRK3-212ENST00000596814 FAM60AQ9NP50 221 aa14□□□□□ -0.17
VRK3-212ENST00000596814 AIG1Q9NVV5 245 aa14□□□□□ -0.17
VRK3-212ENST00000596814 ATXN7L1Q9ULK2 861 aaPredicted RBP14□□□□□ -0.17
VRK3-212ENST00000596814 EIF3LQ9Y262 564 aaKnown RBP14□□□□□ -0.17
VRK3-212ENST00000596814 RUVBL1Q9Y265 456 aaKnown RBP14□□□□□ -0.17
VRK3-212ENST00000596814 C4orf47A7E2U8 309 aa13.99□□□□□ -0.17
VRK3-212ENST00000596814 SAP18O00422 153 aaKnown RBP13.99□□□□□ -0.17
VRK3-212ENST00000596814 DLL1O00548 723 aa13.99□□□□□ -0.17
VRK3-212ENST00000596814 MAP3K7O43318 606 aa13.99□□□□□ -0.17
VRK3-212ENST00000596814 FOXD2O60548 495 aaPredicted RBP13.99□□□□□ -0.17
VRK3-212ENST00000596814 ACPPP15309 386 aa13.99□□□□□ -0.17
VRK3-212ENST00000596814 TGM1P22735 817 aa13.99□□□□□ -0.17
VRK3-212ENST00000596814 RAP1GDS1P52306 607 aa13.99□□□□□ -0.17
VRK3-212ENST00000596814 RGS1Q08116 209 aa13.99□□□□□ -0.17
VRK3-212ENST00000596814 ZC3H12BQ5HYM0 836 aaKnown RBP13.99□□□□□ -0.17
VRK3-212ENST00000596814 IL23RQ5VWK5 629 aa13.99□□□□□ -0.17
VRK3-212ENST00000596814 FAM91A1Q658Y4 838 aa13.99□□□□□ -0.17
VRK3-212ENST00000596814 FRMPD2BQ6IN97 320 aa13.99□□□□□ -0.17
VRK3-212ENST00000596814 PARP9Q8IXQ6 854 aa13.99□□□□□ -0.17
VRK3-212ENST00000596814 C1orf52Q8N6N3 182 aaKnown RBP13.99□□□□□ -0.17
VRK3-212ENST00000596814 NT5CQ8TCD5 201 aa13.99□□□□□ -0.17
VRK3-212ENST00000596814 CHTF18Q8WVB6 975 aa13.99□□□□□ -0.17
VRK3-212ENST00000596814 SLC13A3Q8WWT9 602 aa13.99□□□□□ -0.17
VRK3-212ENST00000596814 FCRL1Q96LA6 429 aa13.99□□□□□ -0.17
VRK3-212ENST00000596814 F2RL3Q96RI0 385 aa13.99□□□□□ -0.17
VRK3-212ENST00000596814 CCDC106Q9BWC9 280 aa13.99□□□□□ -0.17
VRK3-212ENST00000596814 REXO4Q9GZR2 422 aaKnown RBP13.99□□□□□ -0.17
VRK3-212ENST00000596814 CHRNA10Q9GZZ6 450 aa13.99□□□□□ -0.17
VRK3-212ENST00000596814 PDE7BQ9NP56 450 aa13.99□□□□□ -0.17
VRK3-212ENST00000596814 ASIC5Q9NY37 505 aa13.99□□□□□ -0.17
VRK3-212ENST00000596814 SEMA5BQ9P283 1151 aa13.99□□□□□ -0.17
VRK3-212ENST00000596814 CAPN7Q9Y6W3 813 aa13.99□□□□□ -0.17
VRK3-212ENST00000596814 LRIT2A6NDA9 550 aa13.98□□□□□ -0.17
VRK3-212ENST00000596814 H0YGG7 62 aa13.98□□□□□ -0.17
VRK3-212ENST00000596814 MYO1DO94832 1006 aa13.98□□□□□ -0.17
VRK3-212ENST00000596814 GP1BAP07359 652 aa13.98□□□□□ -0.17
VRK3-212ENST00000596814 HNRNPH1P31943 449 aaKnown RBP13.98□□□□□ -0.17
VRK3-212ENST00000596814 ARF3P61204 181 aaPredicted RBP13.98□□□□□ -0.17
VRK3-212ENST00000596814 STXBP1P61764 594 aaKnown RBP13.98□□□□□ -0.17
VRK3-212ENST00000596814 HYAL2Q12891 473 aa13.98□□□□□ -0.17
VRK3-212ENST00000596814 PWP1Q13610 501 aa13.98□□□□□ -0.17
VRK3-212ENST00000596814 RPS6KA2Q15349 733 aa13.98□□□□□ -0.17
VRK3-212ENST00000596814 CLPPQ16740 277 aaPredicted RBP13.98□□□□□ -0.17
VRK3-212ENST00000596814 DEFB110Q30KQ9 67 aa13.98□□□□□ -0.17
VRK3-212ENST00000596814 ADPRMQ3LIE5 342 aa13.98□□□□□ -0.17
VRK3-212ENST00000596814 TMEM35AQ53FP2 167 aa13.98□□□□□ -0.17
VRK3-212ENST00000596814 METTL4Q8N3J2 472 aa13.98□□□□□ -0.17
VRK3-212ENST00000596814 DNAJC22Q8N4W6 341 aa13.98□□□□□ -0.17
VRK3-212ENST00000596814 ZNF655Q8N720 491 aaPredicted RBP13.98□□□□□ -0.17
VRK3-212ENST00000596814 CAMKVQ8NCB2 501 aa13.98□□□□□ -0.17
VRK3-212ENST00000596814 OR4D9Q8NGE8 314 aa13.98□□□□□ -0.17
VRK3-212ENST00000596814 C11orf24Q96F05 449 aaPredicted RBP13.98□□□□□ -0.17
VRK3-212ENST00000596814 MACROD1Q9BQ69 325 aa13.98□□□□□ -0.17
VRK3-212ENST00000596814 EBPLQ9BY08 206 aa13.98□□□□□ -0.17
VRK3-212ENST00000596814 BRINP2Q9C0B6 783 aa13.98□□□□□ -0.17
VRK3-212ENST00000596814 SLC6A16Q9GZN6 736 aa13.98□□□□□ -0.17
VRK3-212ENST00000596814 AHSPQ9NZD4 102 aa13.98□□□□□ -0.17
VRK3-212ENST00000596814 GPR45Q9Y5Y3 372 aa13.98□□□□□ -0.17
VRK3-212ENST00000596814 ADAMTS20P59510 1910 aa13.98□□□□□ -0.17
VRK3-212ENST00000596814 LOC105369274A0A096LPK9 316 aa13.98□□□□□ -0.17
VRK3-212ENST00000596814 LOC102723532A0A0G2JNH3 316 aa13.98□□□□□ -0.17
VRK3-212ENST00000596814 PLPP1O14494 284 aa13.98□□□□□ -0.17
VRK3-212ENST00000596814 SLC22A2O15244 555 aa13.98□□□□□ -0.17
VRK3-212ENST00000596814 P2RX6O15547 441 aa13.98□□□□□ -0.17
VRK3-212ENST00000596814 G6PDP11413 515 aa13.98□□□□□ -0.17
VRK3-212ENST00000596814 ADSLP30566 484 aaPredicted RBP13.98□□□□□ -0.17
VRK3-212ENST00000596814 TIA1P31483 386 aaKnown RBP eCLIP13.98□□□□□ -0.17
VRK3-212ENST00000596814 MRPL19P49406 292 aaKnown RBP13.98□□□□□ -0.17
VRK3-212ENST00000596814 ARL4DP49703 201 aa13.98□□□□□ -0.17
VRK3-212ENST00000596814 SEPHS1P49903 392 aa13.98□□□□□ -0.17
VRK3-212ENST00000596814 VSX2P58304 361 aaPredicted RBP13.98□□□□□ -0.17
VRK3-212ENST00000596814 KLF10Q13118 480 aa13.98□□□□□ -0.17
VRK3-212ENST00000596814 ZSCAN26Q16670 478 aa13.98□□□□□ -0.17
VRK3-212ENST00000596814 PDCD4Q53EL6 469 aaKnown RBP13.98□□□□□ -0.17
VRK3-212ENST00000596814 TOR1AIP1Q5JTV8 583 aa13.98□□□□□ -0.17
VRK3-212ENST00000596814 NOXRED1Q6NXP6 359 aa13.98□□□□□ -0.17
VRK3-212ENST00000596814 CYP20A1Q6UW02 462 aa13.98□□□□□ -0.17
VRK3-212ENST00000596814 TMPRSS9Q7Z410 1059 aa13.98□□□□□ -0.17
VRK3-212ENST00000596814 COMMD6Q7Z4G1 85 aa13.98□□□□□ -0.17
VRK3-212ENST00000596814 KMT5CQ86Y97 462 aa13.98□□□□□ -0.17
VRK3-212ENST00000596814 OR4N4Q8N0Y3 316 aa13.98□□□□□ -0.17
VRK3-212ENST00000596814 MIER2Q8N344 545 aa13.98□□□□□ -0.17
VRK3-212ENST00000596814 LIX1Q8N485 282 aa13.98□□□□□ -0.17
VRK3-212ENST00000596814 RGMAQ96B86 450 aa13.98□□□□□ -0.17
VRK3-212ENST00000596814 TM4SF19Q96DZ7 209 aa13.98□□□□□ -0.17
VRK3-212ENST00000596814 GFM1Q96RP9 751 aaKnown RBP13.98□□□□□ -0.17
VRK3-212ENST00000596814 AICDAQ9GZX7 198 aa13.98□□□□□ -0.17
VRK3-212ENST00000596814 ZNF768Q9H5H4 540 aaKnown RBP13.98□□□□□ -0.17
VRK3-212ENST00000596814 SDR39U1Q9NRG7 319 aaPredicted RBP13.98□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms