RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 KRT38O76015 456 aa14.3□□□□□ -0.12
TRIM28-205ENST00000595028 IPO13O94829 963 aaKnown RBP14.3□□□□□ -0.12
TRIM28-205ENST00000595028 SORBS2O94875 1100 aaKnown RBP14.3□□□□□ -0.12
TRIM28-205ENST00000595028 HPP00738 406 aa14.3□□□□□ -0.12
TRIM28-205ENST00000595028 COX6A1P12074 109 aa14.3□□□□□ -0.12
TRIM28-205ENST00000595028 ECHS1P30084 290 aa14.3□□□□□ -0.12
TRIM28-205ENST00000595028 PHBP35232 272 aa14.3□□□□□ -0.12
TRIM28-205ENST00000595028 AHRP35869 848 aa14.3□□□□□ -0.12
TRIM28-205ENST00000595028 GMPRP36959 345 aa14.3□□□□□ -0.12
TRIM28-205ENST00000595028 EMP2P54851 167 aa14.3□□□□□ -0.12
TRIM28-205ENST00000595028 RGS1Q08116 209 aa14.3□□□□□ -0.12
TRIM28-205ENST00000595028 PWP1Q13610 501 aa14.3□□□□□ -0.12
TRIM28-205ENST00000595028 GLE1Q53GS7 698 aaKnown RBP14.3□□□□□ -0.12
TRIM28-205ENST00000595028 CDKL4Q5MAI5 379 aa14.3□□□□□ -0.12
TRIM28-205ENST00000595028 ATG9BQ674R7 924 aa14.3□□□□□ -0.12
TRIM28-205ENST00000595028 RAPH1Q70E73 1250 aa14.3□□□□□ -0.12
TRIM28-205ENST00000595028 PDSS2Q86YH6 399 aa14.3□□□□□ -0.12
TRIM28-205ENST00000595028 AFAP1L2Q8N4X5 818 aa14.3□□□□□ -0.12
TRIM28-205ENST00000595028 RBMXL3Q8N7X1 1067 aaKnown RBP14.3□□□□□ -0.12
TRIM28-205ENST00000595028 PDPRQ8NCN5 879 aa14.3□□□□□ -0.12
TRIM28-205ENST00000595028 NT5CQ8TCD5 201 aa14.3□□□□□ -0.12
TRIM28-205ENST00000595028 KIAA1191Q96A73 305 aa14.3□□□□□ -0.12
TRIM28-205ENST00000595028 C8orf44Q96CB5 159 aa14.3□□□□□ -0.12
TRIM28-205ENST00000595028 TRIM44Q96DX7 344 aaPredicted RBP14.3□□□□□ -0.12
TRIM28-205ENST00000595028 MOCOSQ96EN8 888 aa14.3□□□□□ -0.12
TRIM28-205ENST00000595028 CYTH2Q99418 400 aa14.3□□□□□ -0.12
TRIM28-205ENST00000595028 FMO2Q99518 471 aa14.3□□□□□ -0.12
TRIM28-205ENST00000595028 CDC42EP4Q9H3Q1 356 aaKnown RBP14.3□□□□□ -0.12
TRIM28-205ENST00000595028 ZNF552Q9H707 407 aaPredicted RBP14.3□□□□□ -0.12
TRIM28-205ENST00000595028 HCN3Q9P1Z3 774 aa14.3□□□□□ -0.12
TRIM28-205ENST00000595028 ZFP69BQ9UJL9 534 aa14.3□□□□□ -0.12
TRIM28-205ENST00000595028 PLAAQ9Y263 795 aa14.3□□□□□ -0.12
TRIM28-205ENST00000595028 SHANK1Q9Y566 2161 aa14.29□□□□□ -0.12
TRIM28-205ENST00000595028 C2CD3Q4AC94 2353 aa14.29□□□□□ -0.12
TRIM28-205ENST00000595028 PCDH17O14917 1159 aa14.29□□□□□ -0.12
TRIM28-205ENST00000595028 TAPBPO15533 448 aa14.29□□□□□ -0.12
TRIM28-205ENST00000595028 KLHL18O94889 574 aa14.29□□□□□ -0.12
TRIM28-205ENST00000595028 BMP10O95393 424 aa14.29□□□□□ -0.12
TRIM28-205ENST00000595028 HEXBP07686 556 aa14.29□□□□□ -0.12
TRIM28-205ENST00000595028 CYC1P08574 325 aa14.29□□□□□ -0.12
TRIM28-205ENST00000595028 GNAZP19086 355 aa14.29□□□□□ -0.12
TRIM28-205ENST00000595028 VARSP26640 1264 aaKnown RBP14.29□□□□□ -0.12
TRIM28-205ENST00000595028 CRABP2P29373 138 aa14.29□□□□□ -0.12
TRIM28-205ENST00000595028 GGT5P36269 586 aa14.29□□□□□ -0.12
TRIM28-205ENST00000595028 GDF5P43026 501 aa14.29□□□□□ -0.12
TRIM28-205ENST00000595028 XCR1P46094 333 aa14.29□□□□□ -0.12
TRIM28-205ENST00000595028 EFNA3P52797 238 aa14.29□□□□□ -0.12
TRIM28-205ENST00000595028 EEF1A2Q05639 463 aaKnown RBP14.29□□□□□ -0.12
TRIM28-205ENST00000595028 DLG1Q12959 904 aa14.29□□□□□ -0.12
TRIM28-205ENST00000595028 CDC16Q13042 620 aa14.29□□□□□ -0.12
TRIM28-205ENST00000595028 BMPR2Q13873 1038 aa14.29□□□□□ -0.12
TRIM28-205ENST00000595028 HERC3Q15034 1050 aa14.29□□□□□ -0.12
TRIM28-205ENST00000595028 IRAK1BP1Q5VVH5 260 aa14.29□□□□□ -0.12
TRIM28-205ENST00000595028 IGFL3Q6UXB1 125 aa14.29□□□□□ -0.12
TRIM28-205ENST00000595028 TBC1D1Q86TI0 1168 aaPredicted RBP14.29□□□□□ -0.12
TRIM28-205ENST00000595028 ANKRD53Q8N9V6 530 aa14.29□□□□□ -0.12
TRIM28-205ENST00000595028 EXT2Q93063 718 aa14.29□□□□□ -0.12
TRIM28-205ENST00000595028 FUT8Q9BYC5 575 aa14.29□□□□□ -0.12
TRIM28-205ENST00000595028 TSPYL1Q9H0U9 437 aa14.29□□□□□ -0.12
TRIM28-205ENST00000595028 ALG9Q9H6U8 611 aa14.29□□□□□ -0.12
TRIM28-205ENST00000595028 CNOT10Q9H9A5 744 aaKnown RBP14.29□□□□□ -0.12
TRIM28-205ENST00000595028 NUDT4Q9NZJ9 180 aa14.29□□□□□ -0.12
TRIM28-205ENST00000595028 RNF112Q9ULX5 631 aa14.29□□□□□ -0.12
TRIM28-205ENST00000595028 NAALAD2Q9Y3Q0 740 aa14.29□□□□□ -0.12
TRIM28-205ENST00000595028 HMX2A2RU54 273 aa14.28□□□□□ -0.12
TRIM28-205ENST00000595028 ZNF860A6NHJ4 632 aa14.28□□□□□ -0.12
TRIM28-205ENST00000595028 JRKO75564 520 aa14.28□□□□□ -0.12
TRIM28-205ENST00000595028 ACSL3O95573 720 aa14.28□□□□□ -0.12
TRIM28-205ENST00000595028 SERPIND1P05546 499 aa14.28□□□□□ -0.12
TRIM28-205ENST00000595028 LTA4HP09960 611 aaKnown RBP14.28□□□□□ -0.12
TRIM28-205ENST00000595028 ALOX12P18054 663 aa14.28□□□□□ -0.12
TRIM28-205ENST00000595028 TFEBP19484 476 aa14.28□□□□□ -0.12
TRIM28-205ENST00000595028 CXCR2P25025 360 aa14.28□□□□□ -0.12
TRIM28-205ENST00000595028 CD97P48960 835 aa14.28□□□□□ -0.12
TRIM28-205ENST00000595028 MLLT10P55197 1068 aa14.28□□□□□ -0.12
TRIM28-205ENST00000595028 SKP1P63208 163 aa14.28□□□□□ -0.12
TRIM28-205ENST00000595028 Q0VFX4 171 aa14.28□□□□□ -0.12
TRIM28-205ENST00000595028 SLBPQ14493 270 aaKnown RBP eCLIP14.28□□□□□ -0.12
TRIM28-205ENST00000595028 SLC6A19Q695T7 634 aa14.28□□□□□ -0.12
TRIM28-205ENST00000595028 FAAH2Q6GMR7 532 aa14.28□□□□□ -0.12
TRIM28-205ENST00000595028 SULT1C3Q6IMI6 304 aa14.28□□□□□ -0.12
TRIM28-205ENST00000595028 JMJD6Q6NYC1 403 aaPredicted RBP14.28□□□□□ -0.12
TRIM28-205ENST00000595028 TMEM205Q6UW68 189 aa14.28□□□□□ -0.12
TRIM28-205ENST00000595028 SLCO4C1Q6ZQN7 724 aa14.28□□□□□ -0.12
TRIM28-205ENST00000595028 CCDC91Q7Z6B0 441 aa14.28□□□□□ -0.12
TRIM28-205ENST00000595028 PARP9Q8IXQ6 854 aa14.28□□□□□ -0.12
TRIM28-205ENST00000595028 SHISA5Q8N114 240 aa14.28□□□□□ -0.12
TRIM28-205ENST00000595028 CEP112Q8N8E3 955 aa14.28□□□□□ -0.12
TRIM28-205ENST00000595028 Q8NA96 180 aa14.28□□□□□ -0.12
TRIM28-205ENST00000595028 OR51Q1Q8NH59 317 aa14.28□□□□□ -0.12
TRIM28-205ENST00000595028 IFT81Q8WYA0 676 aa14.28□□□□□ -0.12
TRIM28-205ENST00000595028 TM9SF4Q92544 642 aa14.28□□□□□ -0.12
TRIM28-205ENST00000595028 PNPLA2Q96AD5 504 aa14.28□□□□□ -0.12
TRIM28-205ENST00000595028 MIB2Q96AX9 1013 aa14.28□□□□□ -0.12
TRIM28-205ENST00000595028 MRRFQ96E11 262 aaKnown RBP14.28□□□□□ -0.12
TRIM28-205ENST00000595028 MFRPQ9BY79 579 aa14.28□□□□□ -0.12
TRIM28-205ENST00000595028 VN1R1Q9GZP7 353 aa14.28□□□□□ -0.12
TRIM28-205ENST00000595028 LHPPQ9H008 270 aa14.28□□□□□ -0.12
TRIM28-205ENST00000595028 NMRAL1Q9HBL8 299 aa14.28□□□□□ -0.12
TRIM28-205ENST00000595028 ZNF160Q9HCG1 818 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms