RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 MIEF2Q96C03 454 aa14.27□□□□□ -0.13
UPF1-202ENST00000594243 MKKSQ9NPJ1 570 aaPredicted RBP14.27□□□□□ -0.13
UPF1-202ENST00000594243 XPR1Q9UBH6 696 aa14.27□□□□□ -0.13
UPF1-202ENST00000594243 TRPC4Q9UBN4 977 aa14.27□□□□□ -0.13
UPF1-202ENST00000594243 ASB1Q9Y576 335 aa14.27□□□□□ -0.13
UPF1-202ENST00000594243 IGLV3-12A0A075B6K2 115 aa14.26□□□□□ -0.13
UPF1-202ENST00000594243 EIF4E1BA6NMX2 242 aaKnown RBP14.26□□□□□ -0.13
UPF1-202ENST00000594243 STX16-NPEPL1H3BU86 382 aa14.26□□□□□ -0.13
UPF1-202ENST00000594243 PEX12O00623 359 aa14.26□□□□□ -0.13
UPF1-202ENST00000594243 STX16O14662 325 aa14.26□□□□□ -0.13
UPF1-202ENST00000594243 WFS1O76024 890 aa14.26□□□□□ -0.13
UPF1-202ENST00000594243 NUDT17P0C025 328 aa14.26□□□□□ -0.13
UPF1-202ENST00000594243 ZGLP1P0C6A0 271 aa14.26□□□□□ -0.13
UPF1-202ENST00000594243 PYGBP11216 843 aa14.26□□□□□ -0.13
UPF1-202ENST00000594243 KRT15P19012 456 aa14.26□□□□□ -0.13
UPF1-202ENST00000594243 EPORP19235 508 aa14.26□□□□□ -0.13
UPF1-202ENST00000594243 TAC1P20366 129 aa14.26□□□□□ -0.13
UPF1-202ENST00000594243 OTX2P32243 289 aa14.26□□□□□ -0.13
UPF1-202ENST00000594243 SLCO1A2P46721 670 aa14.26□□□□□ -0.13
UPF1-202ENST00000594243 IFFO1Q0D2I5 559 aa14.26□□□□□ -0.13
UPF1-202ENST00000594243 E2F2Q14209 437 aa14.26□□□□□ -0.13
UPF1-202ENST00000594243 PCSK4Q6UW60 755 aa14.26□□□□□ -0.13
UPF1-202ENST00000594243 MED25Q71SY5 747 aa14.26□□□□□ -0.13
UPF1-202ENST00000594243 APLFQ8IW19 511 aaPredicted RBP14.26□□□□□ -0.13
UPF1-202ENST00000594243 OR9A4Q8NGU2 314 aa14.26□□□□□ -0.13
UPF1-202ENST00000594243 ZCCHC10Q8TBK6 192 aa14.26□□□□□ -0.13
UPF1-202ENST00000594243 STT3BQ8TCJ2 826 aa14.26□□□□□ -0.13
UPF1-202ENST00000594243 MZB1Q8WU39 189 aa14.26□□□□□ -0.13
UPF1-202ENST00000594243 SLC39A7Q92504 469 aa14.26□□□□□ -0.13
UPF1-202ENST00000594243 PHF21BQ96EK2 531 aa14.26□□□□□ -0.13
UPF1-202ENST00000594243 MOCOSQ96EN8 888 aa14.26□□□□□ -0.13
UPF1-202ENST00000594243 VPS50Q96JG6 964 aa14.26□□□□□ -0.13
UPF1-202ENST00000594243 SPSB2Q99619 263 aa14.26□□□□□ -0.13
UPF1-202ENST00000594243 TGIF2Q9GZN2 237 aa14.26□□□□□ -0.13
UPF1-202ENST00000594243 SLC6A16Q9GZN6 736 aa14.26□□□□□ -0.13
UPF1-202ENST00000594243 ADNPQ9H2P0 1102 aa14.26□□□□□ -0.13
UPF1-202ENST00000594243 SOX17Q9H6I2 414 aaPredicted RBP14.26□□□□□ -0.13
UPF1-202ENST00000594243 SEMA3GQ9NS98 782 aa14.26□□□□□ -0.13
UPF1-202ENST00000594243 CTSFQ9UBX1 484 aa14.26□□□□□ -0.13
UPF1-202ENST00000594243 RAB21Q9UL25 225 aa14.26□□□□□ -0.13
UPF1-202ENST00000594243 MRPS2Q9Y399 296 aaKnown RBP14.26□□□□□ -0.13
UPF1-202ENST00000594243 A0A1W2PPM1 405 aa14.25□□□□□ -0.13
UPF1-202ENST00000594243 SMIM23A6NLE4 172 aa14.25□□□□□ -0.13
UPF1-202ENST00000594243 GOLGA8RI6L899 631 aa14.25□□□□□ -0.13
UPF1-202ENST00000594243 PRAMEF4O60810 478 aa14.25□□□□□ -0.13
UPF1-202ENST00000594243 CLEC3AO75596 197 aa14.25□□□□□ -0.13
UPF1-202ENST00000594243 UMODP07911 640 aa14.25□□□□□ -0.13
UPF1-202ENST00000594243 ALOX12P18054 663 aa14.25□□□□□ -0.13
UPF1-202ENST00000594243 IL1RNP18510 177 aa14.25□□□□□ -0.13
UPF1-202ENST00000594243 MMP11P24347 488 aa14.25□□□□□ -0.13
UPF1-202ENST00000594243 RRADP55042 308 aa14.25□□□□□ -0.13
UPF1-202ENST00000594243 POLE2P56282 527 aa14.25□□□□□ -0.13
UPF1-202ENST00000594243 STXBP1P61764 594 aaKnown RBP14.25□□□□□ -0.13
UPF1-202ENST00000594243 KLC1Q07866 573 aa14.25□□□□□ -0.13
UPF1-202ENST00000594243 GTF2H2Q13888 395 aa14.25□□□□□ -0.13
UPF1-202ENST00000594243 SOWAHCQ53LP3 525 aaPredicted RBP14.25□□□□□ -0.13
UPF1-202ENST00000594243 VWA2Q5GFL6 755 aa14.25□□□□□ -0.13
UPF1-202ENST00000594243 PRAMEF9Q5VWM5 478 aa14.25□□□□□ -0.13
UPF1-202ENST00000594243 LIPJQ5W064 366 aa14.25□□□□□ -0.13
UPF1-202ENST00000594243 GTF2H2CQ6P1K8 395 aa14.25□□□□□ -0.13
UPF1-202ENST00000594243 RIBC1Q8N443 379 aaPredicted RBP14.25□□□□□ -0.13
UPF1-202ENST00000594243 TMEM151AQ8N4L1 468 aa14.25□□□□□ -0.13
UPF1-202ENST00000594243 PTGR2Q8N8N7 351 aaPredicted RBP14.25□□□□□ -0.13
UPF1-202ENST00000594243 AMER3Q8N944 861 aa14.25□□□□□ -0.13
UPF1-202ENST00000594243 TMEM102Q8N9M5 508 aaPredicted RBP14.25□□□□□ -0.13
UPF1-202ENST00000594243 EPS8L3Q8TE67 593 aaKnown RBP14.25□□□□□ -0.13
UPF1-202ENST00000594243 CREB3L4Q8TEY5 395 aa14.25□□□□□ -0.13
UPF1-202ENST00000594243 CCT6BQ92526 530 aa14.25□□□□□ -0.13
UPF1-202ENST00000594243 FER1L6-AS2Q96M78 137 aa14.25□□□□□ -0.13
UPF1-202ENST00000594243 ROPN1BQ9BZX4 212 aaPredicted RBP14.25□□□□□ -0.13
UPF1-202ENST00000594243 IPPKQ9H8X2 491 aa14.25□□□□□ -0.13
UPF1-202ENST00000594243 ROPN1Q9HAT0 212 aaPredicted RBP14.25□□□□□ -0.13
UPF1-202ENST00000594243 CLK4Q9HAZ1 481 aaKnown RBP14.25□□□□□ -0.13
UPF1-202ENST00000594243 C14orf105Q9NVL8 296 aa14.25□□□□□ -0.13
UPF1-202ENST00000594243 TMEM216Q9P0N5 145 aa14.25□□□□□ -0.13
UPF1-202ENST00000594243 TUBD1Q9UJT1 453 aa14.25□□□□□ -0.13
UPF1-202ENST00000594243 ZNF490Q9ULM2 529 aaPredicted RBP14.25□□□□□ -0.13
UPF1-202ENST00000594243 NAALAD2Q9Y3Q0 740 aa14.25□□□□□ -0.13
UPF1-202ENST00000594243 ANKRD12Q6UB98 2062 aa14.24□□□□□ -0.13
UPF1-202ENST00000594243 HEATR5BQ9P2D3 2071 aa14.24□□□□□ -0.13
UPF1-202ENST00000594243 TLDC2A0PJX2 215 aa14.24□□□□□ -0.13
UPF1-202ENST00000594243 ARGFXA6NJG6 315 aa14.24□□□□□ -0.13
UPF1-202ENST00000594243 SGK494L7N484 410 aa14.24□□□□□ -0.13
UPF1-202ENST00000594243 E2F3O00716 465 aa14.24□□□□□ -0.13
UPF1-202ENST00000594243 UGDHO60701 494 aa14.24□□□□□ -0.13
UPF1-202ENST00000594243 KLHL18O94889 574 aa14.24□□□□□ -0.13
UPF1-202ENST00000594243 SIX3O95343 332 aaPredicted RBP14.24□□□□□ -0.13
UPF1-202ENST00000594243 FAM87AP0C7U9 286 aa14.24□□□□□ -0.13
UPF1-202ENST00000594243 ZNF888P0CJ79 500 aaPredicted RBP14.24□□□□□ -0.13
UPF1-202ENST00000594243 IL10P22301 178 aa14.24□□□□□ -0.13
UPF1-202ENST00000594243 EEF1DP29692 281 aaKnown RBP14.24□□□□□ -0.13
UPF1-202ENST00000594243 HNF4AP41235 474 aa14.24□□□□□ -0.13
UPF1-202ENST00000594243 CCT5P48643 541 aa14.24□□□□□ -0.13
UPF1-202ENST00000594243 HYAL2Q12891 473 aa14.24□□□□□ -0.13
UPF1-202ENST00000594243 LY6DQ14210 128 aa14.24□□□□□ -0.13
UPF1-202ENST00000594243 MED27Q6P2C8 311 aa14.24□□□□□ -0.13
UPF1-202ENST00000594243 SHISA6Q6ZSJ9 500 aa14.24□□□□□ -0.13
UPF1-202ENST00000594243 PRSS41Q7RTY9 318 aa14.24□□□□□ -0.13
UPF1-202ENST00000594243 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP14.24□□□□□ -0.131e-6■■■■■ 36.3
UPF1-202ENST00000594243 CYP4X1Q8N118 509 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms