RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 POLR1DQ9Y2S0 133 aa9.48□□□□□ -0.89
LIG3-216ENST00000593099 DOCK5Q9H7D0 1870 aa9.48□□□□□ -0.89
LIG3-216ENST00000593099 SCN1AP35498 2009 aa9.48□□□□□ -0.89
LIG3-216ENST00000593099 A0A0J9YY10 115 aa9.48□□□□□ -0.89
LIG3-216ENST00000593099 KLF11O14901 512 aa9.48□□□□□ -0.89
LIG3-216ENST00000593099 UNC5CO95185 931 aa9.48□□□□□ -0.89
LIG3-216ENST00000593099 VNN2O95498 520 aa9.48□□□□□ -0.89
LIG3-216ENST00000593099 ALOX5P09917 674 aa9.48□□□□□ -0.89
LIG3-216ENST00000593099 CCR7P32248 378 aa9.48□□□□□ -0.89
LIG3-216ENST00000593099 ROR2Q01974 943 aaKnown RBP9.48□□□□□ -0.89
LIG3-216ENST00000593099 SIGLEC14Q08ET2 396 aa9.48□□□□□ -0.89
LIG3-216ENST00000593099 HERC3Q15034 1050 aa9.48□□□□□ -0.89
LIG3-216ENST00000593099 ASTLQ6HA08 431 aaPredicted RBP9.48□□□□□ -0.89
LIG3-216ENST00000593099 BHLHA9Q7RTU4 235 aa9.48□□□□□ -0.89
LIG3-216ENST00000593099 TMEM27Q9HBJ8 222 aa9.48□□□□□ -0.89
LIG3-216ENST00000593099 SARDHQ9UL12 918 aa9.48□□□□□ -0.89
LIG3-216ENST00000593099 PLCL2Q9UPR0 1127 aa9.48□□□□□ -0.89
LIG3-216ENST00000593099 DLGAP4Q9Y2H0 992 aa9.48□□□□□ -0.89
LIG3-216ENST00000593099 SAC3D1A6NKF1 404 aa9.48□□□□□ -0.89
LIG3-216ENST00000593099 A8MUI8 341 aa9.48□□□□□ -0.89
LIG3-216ENST00000593099 AOAHP28039 575 aa9.48□□□□□ -0.89
LIG3-216ENST00000593099 MCCD1P59942 119 aaPredicted RBP9.48□□□□□ -0.89
LIG3-216ENST00000593099 CBX3Q13185 183 aa9.48□□□□□ -0.89
LIG3-216ENST00000593099 PTPRRQ15256 657 aa9.48□□□□□ -0.89
LIG3-216ENST00000593099 STX19Q8N4C7 294 aa9.48□□□□□ -0.89
LIG3-216ENST00000593099 UTP15Q8TED0 518 aaKnown RBP9.48□□□□□ -0.89
LIG3-216ENST00000593099 FUBP1Q96AE4 644 aaKnown RBP9.48□□□□□ -0.89
LIG3-216ENST00000593099 MRPL48Q96GC5 212 aaKnown RBP9.48□□□□□ -0.89
LIG3-216ENST00000593099 TMEM74Q96NL1 305 aa9.48□□□□□ -0.89
LIG3-216ENST00000593099 VPS35Q96QK1 796 aa9.48□□□□□ -0.89
LIG3-216ENST00000593099 SH3GLB1Q9Y371 365 aa9.48□□□□□ -0.89
LIG3-216ENST00000593099 PRSS21Q9Y6M0 314 aa9.48□□□□□ -0.89
LIG3-216ENST00000593099 TMEM233B4DJY2 109 aa9.47□□□□□ -0.89
LIG3-216ENST00000593099 MSR1P21757 451 aa9.47□□□□□ -0.89
LIG3-216ENST00000593099 AQP1P29972 269 aa9.47□□□□□ -0.89
LIG3-216ENST00000593099 PGGT1BP53609 377 aa9.47□□□□□ -0.89
LIG3-216ENST00000593099 RGS8P57771 180 aaPredicted RBP9.47□□□□□ -0.89
LIG3-216ENST00000593099 OR4D1Q15615 310 aa9.47□□□□□ -0.89
LIG3-216ENST00000593099 RPE65Q16518 533 aa9.47□□□□□ -0.89
LIG3-216ENST00000593099 OTUD3Q5T2D3 398 aaPredicted RBP9.47□□□□□ -0.89
LIG3-216ENST00000593099 TSSK4Q6SA08 328 aa9.47□□□□□ -0.89
LIG3-216ENST00000593099 ADGRG6Q86SQ4 1221 aa9.47□□□□□ -0.89
LIG3-216ENST00000593099 ISCA2Q86U28 154 aa9.47□□□□□ -0.89
LIG3-216ENST00000593099 TICAM1Q8IUC6 712 aa9.47□□□□□ -0.89
LIG3-216ENST00000593099 ZDHHC13Q8IUH4 622 aa9.47□□□□□ -0.89
LIG3-216ENST00000593099 RIT1Q92963 219 aa9.47□□□□□ -0.89
LIG3-216ENST00000593099 JSRP1Q96MG2 331 aaPredicted RBP9.47□□□□□ -0.89
LIG3-216ENST00000593099 PELI2Q9HAT8 420 aa9.47□□□□□ -0.89
LIG3-216ENST00000593099 MKS1Q9NXB0 559 aa9.47□□□□□ -0.89
LIG3-216ENST00000593099 PACSIN3Q9UKS6 424 aa9.47□□□□□ -0.89
LIG3-216ENST00000593099 E7EQ34 232 aa9.47□□□□□ -0.89
LIG3-216ENST00000593099 H7C0S8 307 aa9.47□□□□□ -0.89
LIG3-216ENST00000593099 HOXB6P17509 224 aaKnown RBP9.47□□□□□ -0.89
LIG3-216ENST00000593099 ZNF763Q0D2J5 394 aa9.47□□□□□ -0.89
LIG3-216ENST00000593099 CASP12Q6UXS9 341 aa9.47□□□□□ -0.89
LIG3-216ENST00000593099 TMEM184AQ6ZMB5 413 aa9.47□□□□□ -0.89
LIG3-216ENST00000593099 RPS27LQ71UM5 84 aaKnown RBP9.47□□□□□ -0.89
LIG3-216ENST00000593099 CLNKQ7Z7G1 428 aa9.47□□□□□ -0.89
LIG3-216ENST00000593099 GALNT7Q86SF2 657 aa9.47□□□□□ -0.89
LIG3-216ENST00000593099 NRROSQ86YC3 692 aa9.47□□□□□ -0.89
LIG3-216ENST00000593099 OR4K14Q8NGD5 310 aa9.47□□□□□ -0.89
LIG3-216ENST00000593099 PHF10Q8WUB8 498 aaKnown RBP9.47□□□□□ -0.89
LIG3-216ENST00000593099 PMEPA1Q969W9 287 aa9.47□□□□□ -0.89
LIG3-216ENST00000593099 PCED1AQ9H1Q7 454 aa9.47□□□□□ -0.89
LIG3-216ENST00000593099 RERGLQ9H628 205 aa9.47□□□□□ -0.89
LIG3-216ENST00000593099 ZIM2Q9NZV7 527 aa9.47□□□□□ -0.89
LIG3-216ENST00000593099 PDP2Q9P2J9 529 aa9.47□□□□□ -0.89
LIG3-216ENST00000593099 CDV3Q9UKY7 258 aaKnown RBP9.47□□□□□ -0.89
LIG3-216ENST00000593099 TMEM221A6NGB7 291 aa9.47□□□□□ -0.89
LIG3-216ENST00000593099 ARHGEF33A8MVX0 844 aa9.47□□□□□ -0.89
LIG3-216ENST00000593099 M0R296 226 aa9.47□□□□□ -0.89
LIG3-216ENST00000593099 AGR2O95994 175 aa9.47□□□□□ -0.89
LIG3-216ENST00000593099 ALOX12P18054 663 aa9.47□□□□□ -0.89
LIG3-216ENST00000593099 GABRG2P18507 467 aa9.47□□□□□ -0.89
LIG3-216ENST00000593099 LHCGRP22888 699 aa9.47□□□□□ -0.89
LIG3-216ENST00000593099 DEFA1P59665 94 aa9.47□□□□□ -0.89
LIG3-216ENST00000593099 DEFA3P59666 94 aa9.47□□□□□ -0.89
LIG3-216ENST00000593099 HYAL2Q12891 473 aa9.47□□□□□ -0.89
LIG3-216ENST00000593099 UNC50Q53HI1 259 aa9.47□□□□□ -0.89
LIG3-216ENST00000593099 WASHC2DQ5SRD0 308 aa9.47□□□□□ -0.89
LIG3-216ENST00000593099 DENND5AQ6IQ26 1287 aa9.47□□□□□ -0.89
LIG3-216ENST00000593099 DEF8Q6ZN54 512 aa9.47□□□□□ -0.89
LIG3-216ENST00000593099 ZNF534Q76KX8 674 aa9.47□□□□□ -0.89
LIG3-216ENST00000593099 PROSER1Q86XN7 944 aa9.47□□□□□ -0.89
LIG3-216ENST00000593099 BHLHE22Q8NFJ8 381 aaPredicted RBP9.47□□□□□ -0.89
LIG3-216ENST00000593099 BIRC7Q96CA5 298 aa9.47□□□□□ -0.89
LIG3-216ENST00000593099 PRRX2Q99811 253 aa9.47□□□□□ -0.89
LIG3-216ENST00000593099 THUMPD1Q9NXG2 353 aaKnown RBP9.47□□□□□ -0.89
LIG3-216ENST00000593099 EPOPA6NHQ4 379 aa9.47□□□□□ -0.89
LIG3-216ENST00000593099 GBAP04062 536 aa9.47□□□□□ -0.89
LIG3-216ENST00000593099 CNR2P34972 360 aa9.47□□□□□ -0.89
LIG3-216ENST00000593099 CLCN2P51788 898 aa9.47□□□□□ -0.89
LIG3-216ENST00000593099 EMX2Q04743 252 aa9.47□□□□□ -0.89
LIG3-216ENST00000593099 SLC9B1Q4ZJI4 515 aa9.47□□□□□ -0.89
LIG3-216ENST00000593099 CNTN4Q8IWV2 1026 aa9.47□□□□□ -0.89
LIG3-216ENST00000593099 MCEMP1Q8IX19 187 aa9.47□□□□□ -0.89
LIG3-216ENST00000593099 FAM20CQ8IXL6 584 aa9.47□□□□□ -0.89
LIG3-216ENST00000593099 SCAIQ8N9R8 606 aa9.47□□□□□ -0.89
LIG3-216ENST00000593099 ADAMTS18Q8TE60 1221 aa9.47□□□□□ -0.89
LIG3-216ENST00000593099 RASSF5Q8WWW0 418 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms