RNA–Protein interactions for RNA: ENST00000581708.5

CDK5RAP3-222, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 4

Gene CDK5RAP3, Length 543 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-222	ENST00000581708	SLC22A14	Q9Y267	594 aa		11.91	□□□□□ -0.5
CDK5RAP3-222	ENST00000581708	MRPS2	Q9Y399	296 aa	Known RBP	11.91	□□□□□ -0.5
CDK5RAP3-222	ENST00000581708	USP9Y	O00507	2555 aa	Predicted RBP	11.9	□□□□□ -0.5
CDK5RAP3-222	ENST00000581708	GALR3	O60755	368 aa	Predicted RBP	11.9	□□□□□ -0.5
CDK5RAP3-222	ENST00000581708	URI1	O94763	535 aa	Predicted RBP	11.9	□□□□□ -0.5
CDK5RAP3-222	ENST00000581708	KLHL18	O94889	574 aa		11.9	□□□□□ -0.5
CDK5RAP3-222	ENST00000581708	SERPINA6	P08185	405 aa		11.9	□□□□□ -0.5
CDK5RAP3-222	ENST00000581708	PRR35	P0CG20	571 aa		11.9	□□□□□ -0.5
CDK5RAP3-222	ENST00000581708	CCDC166	P0CW27	439 aa		11.9	□□□□□ -0.5
CDK5RAP3-222	ENST00000581708	C1GALT1C1L	P0DN25	315 aa		11.9	□□□□□ -0.5
CDK5RAP3-222	ENST00000581708	IL1RN	P18510	177 aa		11.9	□□□□□ -0.5
CDK5RAP3-222	ENST00000581708	JAK1	P23458	1154 aa		11.9	□□□□□ -0.5
CDK5RAP3-222	ENST00000581708	PHB	P35232	272 aa		11.9	□□□□□ -0.5
CDK5RAP3-222	ENST00000581708	XCR1	P46094	333 aa		11.9	□□□□□ -0.5
CDK5RAP3-222	ENST00000581708	PGGT1B	P53609	377 aa		11.9	□□□□□ -0.5
CDK5RAP3-222	ENST00000581708	MEF2A	Q02078	507 aa	Predicted RBP	11.9	□□□□□ -0.5
CDK5RAP3-222	ENST00000581708		Q0VFX4	171 aa		11.9	□□□□□ -0.5
CDK5RAP3-222	ENST00000581708	UBAP2L	Q14157	1087 aa	Known RBP	11.9	□□□□□ -0.5
CDK5RAP3-222	ENST00000581708	ZNF460	Q14592	562 aa		11.9	□□□□□ -0.5
CDK5RAP3-222	ENST00000581708	TLR1	Q15399	786 aa		11.9	□□□□□ -0.5
CDK5RAP3-222	ENST00000581708	KBTBD12	Q3ZCT8	623 aa		11.9	□□□□□ -0.5
CDK5RAP3-222	ENST00000581708	GLE1	Q53GS7	698 aa	Known RBP	11.9	□□□□□ -0.5
CDK5RAP3-222	ENST00000581708	CATSPERE	Q5SY80	951 aa		11.9	□□□□□ -0.5
CDK5RAP3-222	ENST00000581708	CAPN12	Q6ZSI9	719 aa		11.9	□□□□□ -0.5
CDK5RAP3-222	ENST00000581708	CCDC25	Q86WR0	208 aa		11.9	□□□□□ -0.5
CDK5RAP3-222	ENST00000581708	PARP9	Q8IXQ6	854 aa		11.9	□□□□□ -0.5
CDK5RAP3-222	ENST00000581708	KRT78	Q8N1N4	520 aa		11.9	□□□□□ -0.5
CDK5RAP3-222	ENST00000581708	MMGT1	Q8N4V1	131 aa		11.9	□□□□□ -0.5
CDK5RAP3-222	ENST00000581708	FAM26E	Q8N5C1	309 aa		11.9	□□□□□ -0.5
CDK5RAP3-222	ENST00000581708	PLPP5	Q8NEB5	264 aa		11.9	□□□□□ -0.5
CDK5RAP3-222	ENST00000581708	IMMP1L	Q96LU5	166 aa		11.9	□□□□□ -0.5
CDK5RAP3-222	ENST00000581708	C16orf45	Q96MC5	204 aa	Predicted RBP	11.9	□□□□□ -0.5
CDK5RAP3-222	ENST00000581708	BARD1	Q99728	777 aa	Known RBP	11.9	□□□□□ -0.5
CDK5RAP3-222	ENST00000581708	MFRP	Q9BY79	579 aa		11.9	□□□□□ -0.5
CDK5RAP3-222	ENST00000581708	SLC6A16	Q9GZN6	736 aa		11.9	□□□□□ -0.5
CDK5RAP3-222	ENST00000581708	VN1R1	Q9GZP7	353 aa		11.9	□□□□□ -0.5
CDK5RAP3-222	ENST00000581708	RNF32	Q9H0A6	362 aa		11.9	□□□□□ -0.5
CDK5RAP3-222	ENST00000581708	MTRF1L	Q9UGC7	380 aa	Known RBP	11.9	□□□□□ -0.5
CDK5RAP3-222	ENST00000581708	TEKT2	Q9UIF3	430 aa		11.9	□□□□□ -0.5
CDK5RAP3-222	ENST00000581708	NAALAD2	Q9Y3Q0	740 aa		11.9	□□□□□ -0.5
CDK5RAP3-222	ENST00000581708	PCDHGA10	Q9Y5H3	936 aa		11.9	□□□□□ -0.5
CDK5RAP3-222	ENST00000581708	SYNDIG1L	A6NDD5	238 aa		11.89	□□□□□ -0.51
CDK5RAP3-222	ENST00000581708	MAGEB17	A8MXT2	336 aa		11.89	□□□□□ -0.51
CDK5RAP3-222	ENST00000581708	SGK494	L7N484	410 aa		11.89	□□□□□ -0.51
CDK5RAP3-222	ENST00000581708	WDR47	O94967	919 aa		11.89	□□□□□ -0.51
CDK5RAP3-222	ENST00000581708	MYBL2	P10244	700 aa		11.89	□□□□□ -0.51
CDK5RAP3-222	ENST00000581708	CD1D	P15813	335 aa		11.89	□□□□□ -0.51
CDK5RAP3-222	ENST00000581708	SOX11	P35716	441 aa		11.89	□□□□□ -0.51
CDK5RAP3-222	ENST00000581708	TSFM	P43897	325 aa	Known RBP	11.89	□□□□□ -0.51
CDK5RAP3-222	ENST00000581708	STXBP1	P61764	594 aa	Known RBP	11.89	□□□□□ -0.51
CDK5RAP3-222	ENST00000581708	MAT1A	Q00266	395 aa	Known RBP	11.89	□□□□□ -0.51
CDK5RAP3-222	ENST00000581708	CDC16	Q13042	620 aa		11.89	□□□□□ -0.51
CDK5RAP3-222	ENST00000581708	PCOLCE	Q15113	449 aa		11.89	□□□□□ -0.51
CDK5RAP3-222	ENST00000581708	EXT1	Q16394	746 aa		11.89	□□□□□ -0.51
CDK5RAP3-222	ENST00000581708	SYT16	Q17RD7	645 aa		11.89	□□□□□ -0.51
CDK5RAP3-222	ENST00000581708	PLAG1	Q6DJT9	500 aa		11.89	□□□□□ -0.51
CDK5RAP3-222	ENST00000581708	RPUSD3	Q6P087	351 aa	Known RBP	11.89	□□□□□ -0.51
CDK5RAP3-222	ENST00000581708	SLCO4C1	Q6ZQN7	724 aa		11.89	□□□□□ -0.51
CDK5RAP3-222	ENST00000581708	PRSS41	Q7RTY9	318 aa		11.89	□□□□□ -0.51
CDK5RAP3-222	ENST00000581708	CPEB2	Q7Z5Q1	589 aa	Known RBP	11.89	□□□□□ -0.51
CDK5RAP3-222	ENST00000581708	TMPRSS11B	Q86T26	416 aa		11.89	□□□□□ -0.51
CDK5RAP3-222	ENST00000581708	TBC1D1	Q86TI0	1168 aa	Predicted RBP	11.89	□□□□□ -0.51
CDK5RAP3-222	ENST00000581708	PDSS2	Q86YH6	399 aa		11.89	□□□□□ -0.51
CDK5RAP3-222	ENST00000581708	PPM1N	Q8N819	430 aa		11.89	□□□□□ -0.51
CDK5RAP3-222	ENST00000581708	PDPR	Q8NCN5	879 aa		11.89	□□□□□ -0.51
CDK5RAP3-222	ENST00000581708	ZNF740	Q8NDX6	193 aa		11.89	□□□□□ -0.51
CDK5RAP3-222	ENST00000581708	STAG3L4	Q8TBR4	150 aa		11.89	□□□□□ -0.51
CDK5RAP3-222	ENST00000581708	FBF1	Q8TES7	1133 aa		11.89	□□□□□ -0.51
CDK5RAP3-222	ENST00000581708	HAS2	Q92819	552 aa		11.89	□□□□□ -0.51
CDK5RAP3-222	ENST00000581708	C8orf44	Q96CB5	159 aa		11.89	□□□□□ -0.51
CDK5RAP3-222	ENST00000581708	WDR34	Q96EX3	536 aa		11.89	□□□□□ -0.51
CDK5RAP3-222	ENST00000581708	LRRC1	Q9BTT6	524 aa		11.89	□□□□□ -0.51
CDK5RAP3-222	ENST00000581708	CAB39L	Q9H9S4	337 aa		11.89	□□□□□ -0.51
CDK5RAP3-222	ENST00000581708	NMRAL1	Q9HBL8	299 aa		11.89	□□□□□ -0.51
CDK5RAP3-222	ENST00000581708	AGPAT4	Q9NRZ5	378 aa		11.89	□□□□□ -0.51
CDK5RAP3-222	ENST00000581708	ZDHHC18	Q9NUE0	388 aa		11.89	□□□□□ -0.51
CDK5RAP3-222	ENST00000581708	DNAJC11	Q9NVH1	559 aa		11.89	□□□□□ -0.51
CDK5RAP3-222	ENST00000581708	SHANK1	Q9Y566	2161 aa		11.88	□□□□□ -0.51
CDK5RAP3-222	ENST00000581708		A0A088AWK7	358 aa		11.88	□□□□□ -0.51
CDK5RAP3-222	ENST00000581708	DYTN	A2CJ06	578 aa		11.88	□□□□□ -0.51
CDK5RAP3-222	ENST00000581708	CLGN	O14967	610 aa		11.88	□□□□□ -0.51
CDK5RAP3-222	ENST00000581708	RDH16	O75452	317 aa		11.88	□□□□□ -0.51
CDK5RAP3-222	ENST00000581708	STK16	O75716	305 aa		11.88	□□□□□ -0.51
CDK5RAP3-222	ENST00000581708	PIAS1	O75925	651 aa		11.88	□□□□□ -0.51
CDK5RAP3-222	ENST00000581708	WFS1	O76024	890 aa		11.88	□□□□□ -0.51
CDK5RAP3-222	ENST00000581708	ZIC2	O95409	532 aa	Predicted RBP	11.88	□□□□□ -0.51
CDK5RAP3-222	ENST00000581708	S100B	P04271	92 aa	Predicted RBP	11.88	□□□□□ -0.51
CDK5RAP3-222	ENST00000581708	SMIM10L1	P0DMW3	83 aa		11.88	□□□□□ -0.51
CDK5RAP3-222	ENST00000581708	ZNF10	P21506	573 aa	Predicted RBP	11.88	□□□□□ -0.51
CDK5RAP3-222	ENST00000581708	PCDH1	Q08174	1060 aa		11.88	□□□□□ -0.51
CDK5RAP3-222	ENST00000581708	LAPTM5	Q13571	262 aa		11.88	□□□□□ -0.51
CDK5RAP3-222	ENST00000581708	ZNF169	Q14929	603 aa	Predicted RBP	11.88	□□□□□ -0.51
CDK5RAP3-222	ENST00000581708	INA	Q16352	499 aa		11.88	□□□□□ -0.51
CDK5RAP3-222	ENST00000581708	MINDY4	Q4G0A6	757 aa		11.88	□□□□□ -0.51
CDK5RAP3-222	ENST00000581708	COLEC12	Q5KU26	742 aa		11.88	□□□□□ -0.51
CDK5RAP3-222	ENST00000581708	TMIGD1	Q6UXZ0	262 aa		11.88	□□□□□ -0.51
CDK5RAP3-222	ENST00000581708	CUZD1	Q86UP6	607 aa		11.88	□□□□□ -0.51
CDK5RAP3-222	ENST00000581708	CNPY4	Q8N129	248 aa		11.88	□□□□□ -0.51
CDK5RAP3-222	ENST00000581708	ANKRD53	Q8N9V6	530 aa		11.88	□□□□□ -0.51
CDK5RAP3-222	ENST00000581708	RHEBL1	Q8TAI7	183 aa		11.88	□□□□□ -0.51

Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms