RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 TAPBPO15533 448 aa14.04□□□□□ -0.16
SS18-212ENST00000579061 ALOX12BO75342 701 aa14.04□□□□□ -0.16
SS18-212ENST00000579061 STK16O75716 305 aa14.04□□□□□ -0.16
SS18-212ENST00000579061 KLHL18O94889 574 aa14.04□□□□□ -0.16
SS18-212ENST00000579061 SERPINA6P08185 405 aa14.04□□□□□ -0.16
SS18-212ENST00000579061 C1GALT1C1LP0DN25 315 aa14.04□□□□□ -0.16
SS18-212ENST00000579061 COX6A1P12074 109 aa14.04□□□□□ -0.16
SS18-212ENST00000579061 NCF1P14598 390 aaPredicted RBP14.04□□□□□ -0.16
SS18-212ENST00000579061 ALOX12P18054 663 aa14.04□□□□□ -0.16
SS18-212ENST00000579061 VARSP26640 1264 aaKnown RBP14.04□□□□□ -0.16
SS18-212ENST00000579061 GDF5P43026 501 aa14.04□□□□□ -0.16
SS18-212ENST00000579061 XCR1P46094 333 aa14.04□□□□□ -0.16
SS18-212ENST00000579061 EFTUD2Q15029 972 aaKnown RBP eCLIP14.04□□□□□ -0.165e-13■■■■■ 88.9
SS18-212ENST00000579061 C18orf21Q32NC0 220 aaPredicted RBP14.04□□□□□ -0.16
SS18-212ENST00000579061 JMJD6Q6NYC1 403 aaPredicted RBP14.04□□□□□ -0.16
SS18-212ENST00000579061 IGFL2Q6UWQ7 119 aa14.04□□□□□ -0.16
SS18-212ENST00000579061 SLCO4C1Q6ZQN7 724 aa14.04□□□□□ -0.16
SS18-212ENST00000579061 ABHD13Q7L211 337 aa14.04□□□□□ -0.16
SS18-212ENST00000579061 CMC1Q7Z7K0 106 aa14.04□□□□□ -0.16
SS18-212ENST00000579061 ISCA2Q86U28 154 aa14.04□□□□□ -0.16
SS18-212ENST00000579061 PDSS2Q86YH6 399 aa14.04□□□□□ -0.16
SS18-212ENST00000579061 PARP9Q8IXQ6 854 aa14.04□□□□□ -0.16
SS18-212ENST00000579061 ANKRD53Q8N9V6 530 aa14.04□□□□□ -0.16
SS18-212ENST00000579061 TTLQ8NG68 377 aa14.04□□□□□ -0.16
SS18-212ENST00000579061 MIB2Q96AX9 1013 aa14.04□□□□□ -0.16
SS18-212ENST00000579061 MOCOSQ96EN8 888 aa14.04□□□□□ -0.16
SS18-212ENST00000579061 OR1F2PQ96R84 312 aa14.04□□□□□ -0.16
SS18-212ENST00000579061 TMEM79Q9BSE2 394 aa14.04□□□□□ -0.16
SS18-212ENST00000579061 SLC6A16Q9GZN6 736 aa14.04□□□□□ -0.16
SS18-212ENST00000579061 EHD1Q9H4M9 534 aa14.04□□□□□ -0.16
SS18-212ENST00000579061 DNAJC11Q9NVH1 559 aa14.04□□□□□ -0.16
SS18-212ENST00000579061 RIC8BQ9NVN3 520 aa14.04□□□□□ -0.16
SS18-212ENST00000579061 CD274Q9NZQ7 290 aa14.04□□□□□ -0.16
SS18-212ENST00000579061 MKL2Q9ULH7 1088 aa14.04□□□□□ -0.16
SS18-212ENST00000579061 RNF112Q9ULX5 631 aa14.04□□□□□ -0.16
SS18-212ENST00000579061 ACOT9Q9Y305 439 aa14.04□□□□□ -0.16
SS18-212ENST00000579061 RP1L1Q8IWN7 2480 aaPredicted RBP14.04□□□□□ -0.16
SS18-212ENST00000579061 A0A087X1B8 175 aa14.03□□□□□ -0.16
SS18-212ENST00000579061 IGHV1-45A0A0A0MS14 117 aa14.03□□□□□ -0.16
SS18-212ENST00000579061 NSG1A0A0A6YYJ2 146 aa14.03□□□□□ -0.16
SS18-212ENST00000579061 TTLL8A6PVC2 850 aa14.03□□□□□ -0.16
SS18-212ENST00000579061 PYCARD-AS1I3L0S3 204 aa14.03□□□□□ -0.16
SS18-212ENST00000579061 SGK494L7N484 410 aa14.03□□□□□ -0.16
SS18-212ENST00000579061 CLGNO14967 610 aa14.03□□□□□ -0.16
SS18-212ENST00000579061 GALR3O60755 368 aaPredicted RBP14.03□□□□□ -0.16
SS18-212ENST00000579061 KERAO60938 352 aa14.03□□□□□ -0.16
SS18-212ENST00000579061 S100BP04271 92 aaPredicted RBP14.03□□□□□ -0.16
SS18-212ENST00000579061 SERPIND1P05546 499 aa14.03□□□□□ -0.16
SS18-212ENST00000579061 TFEBP19484 476 aa14.03□□□□□ -0.16
SS18-212ENST00000579061 ECHS1P30084 290 aa14.03□□□□□ -0.16
SS18-212ENST00000579061 CD97P48960 835 aa14.03□□□□□ -0.16
SS18-212ENST00000579061 AP2B1P63010 937 aa14.03□□□□□ -0.16
SS18-212ENST00000579061 DLG1Q12959 904 aa14.03□□□□□ -0.16
SS18-212ENST00000579061 RBBP5Q15291 538 aaKnown RBP14.03□□□□□ -0.16
SS18-212ENST00000579061 AGAP7PQ5VUJ5 663 aa14.03□□□□□ -0.16
SS18-212ENST00000579061 SLC6A19Q695T7 634 aa14.03□□□□□ -0.16
SS18-212ENST00000579061 RIPOR1Q6ZS17 1223 aa14.03□□□□□ -0.16
SS18-212ENST00000579061 KRT78Q8N1N4 520 aa14.03□□□□□ -0.16
SS18-212ENST00000579061 ZADH2Q8N4Q0 377 aa14.03□□□□□ -0.16
SS18-212ENST00000579061 UTP15Q8TED0 518 aaKnown RBP14.03□□□□□ -0.16
SS18-212ENST00000579061 METTL21AQ8WXB1 218 aa14.03□□□□□ -0.16
SS18-212ENST00000579061 IFT81Q8WYA0 676 aa14.03□□□□□ -0.16
SS18-212ENST00000579061 C8orf44Q96CB5 159 aa14.03□□□□□ -0.16
SS18-212ENST00000579061 THOC3Q96J01 351 aaKnown RBP14.03□□□□□ -0.16
SS18-212ENST00000579061 AGAP4Q96P64 663 aa14.03□□□□□ -0.16
SS18-212ENST00000579061 ATOH8Q96SQ7 321 aa14.03□□□□□ -0.16
SS18-212ENST00000579061 VN1R1Q9GZP7 353 aa14.03□□□□□ -0.16
SS18-212ENST00000579061 ZNF700Q9H0M5 742 aa14.03□□□□□ -0.16
SS18-212ENST00000579061 CDC42EP4Q9H3Q1 356 aaKnown RBP14.03□□□□□ -0.16
SS18-212ENST00000579061 IGSF5Q9NSI5 407 aa14.03□□□□□ -0.16
SS18-212ENST00000579061 NUDT4Q9NZJ9 180 aa14.03□□□□□ -0.16
SS18-212ENST00000579061 NAALAD2Q9Y3Q0 740 aa14.03□□□□□ -0.16
SS18-212ENST00000579061 PRRC2CQ9Y520 2896 aaKnown RBP14.02□□□□□ -0.16
SS18-212ENST00000579061 SHANK1Q9Y566 2161 aa14.02□□□□□ -0.16
SS18-212ENST00000579061 HMX2A2RU54 273 aa14.02□□□□□ -0.17
SS18-212ENST00000579061 RDH16O75452 317 aa14.02□□□□□ -0.17
SS18-212ENST00000579061 C2P06681 752 aa14.02□□□□□ -0.17
SS18-212ENST00000579061 C8orf89P0DMQ9 161 aa14.02□□□□□ -0.17
SS18-212ENST00000579061 SMIM10L1P0DMW3 83 aa14.02□□□□□ -0.17
SS18-212ENST00000579061 ICAM2P13598 275 aa14.02□□□□□ -0.17
SS18-212ENST00000579061 KCNC1P48547 511 aa14.02□□□□□ -0.17
SS18-212ENST00000579061 HSPA7P48741 367 aa14.02□□□□□ -0.17
SS18-212ENST00000579061 AGTR2P50052 363 aa14.02□□□□□ -0.17
SS18-212ENST00000579061 MLLT10P55197 1068 aa14.02□□□□□ -0.17
SS18-212ENST00000579061 EEF1A2Q05639 463 aaKnown RBP14.02□□□□□ -0.17
SS18-212ENST00000579061 Q0VFX4 171 aa14.02□□□□□ -0.17
SS18-212ENST00000579061 HYAL2Q12891 473 aa14.02□□□□□ -0.17
SS18-212ENST00000579061 FAM83EQ2M2I3 478 aa14.02□□□□□ -0.17
SS18-212ENST00000579061 COLEC12Q5KU26 742 aa14.02□□□□□ -0.17
SS18-212ENST00000579061 MROH9Q5TGP6 573 aa14.02□□□□□ -0.17
SS18-212ENST00000579061 FAAH2Q6GMR7 532 aa14.02□□□□□ -0.17
SS18-212ENST00000579061 TMIGD1Q6UXZ0 262 aa14.02□□□□□ -0.17
SS18-212ENST00000579061 Q6ZS92 163 aa14.02□□□□□ -0.17
SS18-212ENST00000579061 LRRC70Q7Z2Q7 622 aa14.02□□□□□ -0.17
SS18-212ENST00000579061 KBTBD2Q8IY47 623 aa14.02□□□□□ -0.17
SS18-212ENST00000579061 Q8NA96 180 aa14.02□□□□□ -0.17
SS18-212ENST00000579061 PLPP5Q8NEB5 264 aa14.02□□□□□ -0.17
SS18-212ENST00000579061 RHEBL1Q8TAI7 183 aa14.02□□□□□ -0.17
SS18-212ENST00000579061 CREB3L4Q8TEY5 395 aa14.02□□□□□ -0.17
SS18-212ENST00000579061 NXNL1Q96CM4 212 aa14.02□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms