RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 CD1CP29017 333 aa13.07□□□□□ -0.32
CCDC40-209ENST00000573474 PTPN4P29074 926 aa13.07□□□□□ -0.32
CCDC40-209ENST00000573474 TIA1P31483 386 aaKnown RBP eCLIP13.07□□□□□ -0.32
CCDC40-209ENST00000573474 POLR2JP52435 117 aaKnown RBP13.07□□□□□ -0.32
CCDC40-209ENST00000573474 ARFIP1P53367 373 aa13.07□□□□□ -0.32
CCDC40-209ENST00000573474 CLDN8P56748 225 aa13.07□□□□□ -0.32
CCDC40-209ENST00000573474 RAE1P78406 368 aaKnown RBP13.07□□□□□ -0.32
CCDC40-209ENST00000573474 RGS1Q08116 209 aa13.07□□□□□ -0.32
CCDC40-209ENST00000573474 DMTNQ08495 405 aa13.07□□□□□ -0.32
CCDC40-209ENST00000573474 PWP1Q13610 501 aa13.07□□□□□ -0.32
CCDC40-209ENST00000573474 ADPRMQ3LIE5 342 aa13.07□□□□□ -0.32
CCDC40-209ENST00000573474 TCEAL6Q6IPX3 200 aa13.07□□□□□ -0.32
CCDC40-209ENST00000573474 BLOC1S3Q6QNY0 202 aa13.07□□□□□ -0.32
CCDC40-209ENST00000573474 FAM92BQ6ZTR7 304 aa13.07□□□□□ -0.32
CCDC40-209ENST00000573474 RNF44Q7L0R7 432 aa13.07□□□□□ -0.32
CCDC40-209ENST00000573474 PAGE2Q7Z2X7 111 aa13.07□□□□□ -0.32
CCDC40-209ENST00000573474 ASPGQ86U10 573 aa13.07□□□□□ -0.32
CCDC40-209ENST00000573474 PLXDC1Q8IUK5 500 aa13.07□□□□□ -0.32
CCDC40-209ENST00000573474 CARFQ8N187 725 aa13.07□□□□□ -0.32
CCDC40-209ENST00000573474 C19orf47Q8N9M1 422 aaKnown RBP13.07□□□□□ -0.32
CCDC40-209ENST00000573474 GLB1L3Q8NCI6 653 aaPredicted RBP13.07□□□□□ -0.32
CCDC40-209ENST00000573474 SRFBP1Q8NEF9 429 aaKnown RBP13.07□□□□□ -0.32
CCDC40-209ENST00000573474 WDR48Q8TAF3 677 aa13.07□□□□□ -0.32
CCDC40-209ENST00000573474 NT5CQ8TCD5 201 aa13.07□□□□□ -0.32
CCDC40-209ENST00000573474 TCEAL3Q969E4 200 aa13.07□□□□□ -0.32
CCDC40-209ENST00000573474 SLC7A6OSQ96CW6 309 aaPredicted RBP13.07□□□□□ -0.32
CCDC40-209ENST00000573474 TM4SF19Q96DZ7 209 aa13.07□□□□□ -0.32
CCDC40-209ENST00000573474 TCTN2Q96GX1 697 aa13.07□□□□□ -0.32
CCDC40-209ENST00000573474 TEX37Q96LM6 180 aa13.07□□□□□ -0.32
CCDC40-209ENST00000573474 TGM7Q96PF1 710 aa13.07□□□□□ -0.32
CCDC40-209ENST00000573474 OR2A5Q96R48 311 aa13.07□□□□□ -0.32
CCDC40-209ENST00000573474 MAP3K3Q99759 626 aa13.07□□□□□ -0.32
CCDC40-209ENST00000573474 EBPLQ9BY08 206 aa13.07□□□□□ -0.32
CCDC40-209ENST00000573474 REXO4Q9GZR2 422 aaKnown RBP13.07□□□□□ -0.32
CCDC40-209ENST00000573474 ACTL8Q9H568 366 aa13.07□□□□□ -0.32
CCDC40-209ENST00000573474 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.07□□□□□ -0.32
CCDC40-209ENST00000573474 ADAM29Q9UKF5 820 aa13.07□□□□□ -0.32
CCDC40-209ENST00000573474 U3KQA8 63 aa13.07□□□□□ -0.32
CCDC40-209ENST00000573474 DYTNA2CJ06 578 aa13.06□□□□□ -0.32
CCDC40-209ENST00000573474 CPED1A4D0V7 1026 aa13.06□□□□□ -0.32
CCDC40-209ENST00000573474 EME2A4GXA9 379 aaPredicted RBP13.06□□□□□ -0.32
CCDC40-209ENST00000573474 NR5A2O00482 541 aa13.06□□□□□ -0.32
CCDC40-209ENST00000573474 PLPP1O14494 284 aa13.06□□□□□ -0.32
CCDC40-209ENST00000573474 PRMT3O60678 531 aa13.06□□□□□ -0.32
CCDC40-209ENST00000573474 KLK1P06870 262 aa13.06□□□□□ -0.32
CCDC40-209ENST00000573474 ZNF806P0C7X5 589 aa13.06□□□□□ -0.32
CCDC40-209ENST00000573474 TACR1P25103 407 aa13.06□□□□□ -0.32
CCDC40-209ENST00000573474 IL12AP29459 219 aa13.06□□□□□ -0.32
CCDC40-209ENST00000573474 HNRNPH1P31943 449 aaKnown RBP13.06□□□□□ -0.32
CCDC40-209ENST00000573474 ASMTP46597 345 aa13.06□□□□□ -0.32
CCDC40-209ENST00000573474 CPA2P48052 419 aa13.06□□□□□ -0.32
CCDC40-209ENST00000573474 DUSP3P51452 185 aaPredicted RBP13.06□□□□□ -0.32
CCDC40-209ENST00000573474 CLNS1AP54105 237 aaKnown RBP13.06□□□□□ -0.32
CCDC40-209ENST00000573474 GFERP55789 205 aa13.06□□□□□ -0.32
CCDC40-209ENST00000573474 KCNK10P57789 538 aa13.06□□□□□ -0.32
CCDC40-209ENST00000573474 STXBP1P61764 594 aaKnown RBP13.06□□□□□ -0.32
CCDC40-209ENST00000573474 TGM3Q08188 693 aa13.06□□□□□ -0.32
CCDC40-209ENST00000573474 HYAL2Q12891 473 aa13.06□□□□□ -0.32
CCDC40-209ENST00000573474 SQSTM1Q13501 440 aa13.06□□□□□ -0.32
CCDC40-209ENST00000573474 PTGR1Q14914 329 aa13.06□□□□□ -0.32
CCDC40-209ENST00000573474 INAVAQ3KP66 663 aa13.06□□□□□ -0.32
CCDC40-209ENST00000573474 AMZ1Q400G9 498 aa13.06□□□□□ -0.32
CCDC40-209ENST00000573474 ZC3H12BQ5HYM0 836 aaKnown RBP13.06□□□□□ -0.32
CCDC40-209ENST00000573474 TOR1AIP1Q5JTV8 583 aa13.06□□□□□ -0.32
CCDC40-209ENST00000573474 GUSBP11Q6P575 273 aa13.06□□□□□ -0.32
CCDC40-209ENST00000573474 WDR74Q6RFH5 385 aaPredicted RBP13.06□□□□□ -0.32
CCDC40-209ENST00000573474 RINLQ6ZS11 566 aa13.06□□□□□ -0.32
CCDC40-209ENST00000573474 VN1R4Q7Z5H5 301 aa13.06□□□□□ -0.32
CCDC40-209ENST00000573474 SPRED1Q7Z699 444 aa13.06□□□□□ -0.32
CCDC40-209ENST00000573474 UBE3DQ7Z6J8 389 aa13.06□□□□□ -0.32
CCDC40-209ENST00000573474 SUMF1Q8NBK3 374 aa13.06□□□□□ -0.32
CCDC40-209ENST00000573474 CAMKVQ8NCB2 501 aa13.06□□□□□ -0.32
CCDC40-209ENST00000573474 NAT6Q93015 286 aa13.06□□□□□ -0.32
CCDC40-209ENST00000573474 RERGQ96A58 199 aaPredicted RBP13.06□□□□□ -0.32
CCDC40-209ENST00000573474 KLHL29Q96CT2 875 aa13.06□□□□□ -0.32
CCDC40-209ENST00000573474 TMEM74Q96NL1 305 aa13.06□□□□□ -0.32
CCDC40-209ENST00000573474 FCRL4Q96PJ5 515 aa13.06□□□□□ -0.32
CCDC40-209ENST00000573474 TSSK3Q96PN8 268 aa13.06□□□□□ -0.32
CCDC40-209ENST00000573474 BTBD10Q9BSF8 475 aa13.06□□□□□ -0.32
CCDC40-209ENST00000573474 SLC6A16Q9GZN6 736 aa13.06□□□□□ -0.32
CCDC40-209ENST00000573474 CHRNA10Q9GZZ6 450 aa13.06□□□□□ -0.32
CCDC40-209ENST00000573474 EFCAB1Q9HAE3 211 aa13.06□□□□□ -0.32
CCDC40-209ENST00000573474 DNAAF2Q9NVR5 837 aaKnown RBP13.06□□□□□ -0.32
CCDC40-209ENST00000573474 MCM8Q9UJA3 840 aa13.06□□□□□ -0.32
CCDC40-209ENST00000573474 MAPRE3Q9UPY8 281 aa13.06□□□□□ -0.32
CCDC40-209ENST00000573474 WBP11Q9Y2W2 641 aaKnown RBP13.06□□□□□ -0.32
CCDC40-209ENST00000573474 CABIN1Q9Y6J0 2220 aa13.06□□□□□ -0.32
CCDC40-209ENST00000573474 HEATR5BQ9P2D3 2071 aa13.06□□□□□ -0.32
CCDC40-209ENST00000573474 GNG14A0A1W2PPG7 69 aa13.05□□□□□ -0.32
CCDC40-209ENST00000573474 BBIP1A8MTZ0 92 aa13.05□□□□□ -0.32
CCDC40-209ENST00000573474 H0YGG7 62 aa13.05□□□□□ -0.32
CCDC40-209ENST00000573474 MAP3K7O43318 606 aa13.05□□□□□ -0.32
CCDC40-209ENST00000573474 KIF1CO43896 1103 aaKnown RBP13.05□□□□□ -0.32
CCDC40-209ENST00000573474 PRAMEF10O60809 474 aa13.05□□□□□ -0.32
CCDC40-209ENST00000573474 C9P02748 559 aa13.05□□□□□ -0.32
CCDC40-209ENST00000573474 SLC35G6P0C7Q6 338 aa13.05□□□□□ -0.32
CCDC40-209ENST00000573474 CKMT1AP12532 417 aa13.05□□□□□ -0.32
CCDC40-209ENST00000573474 PRPS1L1P21108 318 aa13.05□□□□□ -0.32
CCDC40-209ENST00000573474 BSGP35613 385 aa13.05□□□□□ -0.32
CCDC40-209ENST00000573474 ZFP36L2P47974 494 aaKnown RBP13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms