RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 H3BMH7 237 aa16.42■□□□□ 0.22
CLN3-217ENST00000565354 STX16-NPEPL1H3BU86 382 aa16.42■□□□□ 0.22
CLN3-217ENST00000565354 STX16O14662 325 aa16.42■□□□□ 0.22
CLN3-217ENST00000565354 DSCR3O14972 297 aa16.42■□□□□ 0.22
CLN3-217ENST00000565354 KATNA1O75449 491 aa16.42■□□□□ 0.22
CLN3-217ENST00000565354 STATHP02808 62 aa16.42■□□□□ 0.22
CLN3-217ENST00000565354 MLLT10P55197 1068 aa16.42■□□□□ 0.22
CLN3-217ENST00000565354 ZNF844Q08AG5 666 aa16.42■□□□□ 0.22
CLN3-217ENST00000565354 CHIT1Q13231 466 aa16.42■□□□□ 0.22
CLN3-217ENST00000565354 LAPTM5Q13571 262 aa16.42■□□□□ 0.22
CLN3-217ENST00000565354 GTF2H2Q13888 395 aa16.42■□□□□ 0.22
CLN3-217ENST00000565354 PCBP2Q15366 365 aaKnown RBP eCLIP16.42■□□□□ 0.22
CLN3-217ENST00000565354 HKDC1Q2TB90 917 aa16.42■□□□□ 0.22
CLN3-217ENST00000565354 CCDC153Q494R4 210 aa16.42■□□□□ 0.22
CLN3-217ENST00000565354 GTF2H2CQ6P1K8 395 aa16.42■□□□□ 0.22
CLN3-217ENST00000565354 FAM199XQ6PEV8 388 aaPredicted RBP16.42■□□□□ 0.22
CLN3-217ENST00000565354 SLCO4C1Q6ZQN7 724 aa16.42■□□□□ 0.22
CLN3-217ENST00000565354 MYLK4Q86YV6 388 aaPredicted RBP16.42■□□□□ 0.22
CLN3-217ENST00000565354 SRRM1Q8IYB3 904 aaKnown RBP16.42■□□□□ 0.22
CLN3-217ENST00000565354 PPP4R1Q8TF05 950 aa16.42■□□□□ 0.22
CLN3-217ENST00000565354 CT55Q8WUE5 264 aa16.42■□□□□ 0.22
CLN3-217ENST00000565354 SLC13A3Q8WWT9 602 aa16.42■□□□□ 0.22
CLN3-217ENST00000565354 PTCD3Q96EY7 689 aaKnown RBP16.42■□□□□ 0.22
CLN3-217ENST00000565354 SMC6Q96SB8 1091 aa16.42■□□□□ 0.22
CLN3-217ENST00000565354 C17orf62Q9BQA9 187 aa16.42■□□□□ 0.22
CLN3-217ENST00000565354 DPH2Q9BQC3 489 aaPredicted RBP16.42■□□□□ 0.22
CLN3-217ENST00000565354 EFCAB11Q9BUY7 163 aa16.42■□□□□ 0.22
CLN3-217ENST00000565354 KCND3Q9UK17 655 aa16.42■□□□□ 0.22
CLN3-217ENST00000565354 RUVBL1Q9Y265 456 aaKnown RBP16.42■□□□□ 0.22
CLN3-217ENST00000565354 ASB1Q9Y576 335 aa16.42■□□□□ 0.22
CLN3-217ENST00000565354 HEATR5BQ9P2D3 2071 aa16.42■□□□□ 0.22
CLN3-217ENST00000565354 KCNE1BA0A087WTH5 132 aa16.41■□□□□ 0.22
CLN3-217ENST00000565354 LRRC14BA6NHZ5 514 aa16.41■□□□□ 0.22
CLN3-217ENST00000565354 NDUFS4O43181 175 aa16.41■□□□□ 0.22
CLN3-217ENST00000565354 LCMT2O60294 686 aaKnown RBP16.41■□□□□ 0.22
CLN3-217ENST00000565354 SIX3O95343 332 aaPredicted RBP16.41■□□□□ 0.22
CLN3-217ENST00000565354 MYZAPP0CAP1 466 aa16.41■□□□□ 0.22
CLN3-217ENST00000565354 PIM1P11309 404 aaPredicted RBP16.41■□□□□ 0.22
CLN3-217ENST00000565354 RORAP35398 523 aa16.41■□□□□ 0.22
CLN3-217ENST00000565354 SCTRP47872 440 aa16.41■□□□□ 0.22
CLN3-217ENST00000565354 RPS15P62841 145 aaKnown RBP16.41■□□□□ 0.22
CLN3-217ENST00000565354 DCDP81605 110 aaKnown RBP16.41■□□□□ 0.22
CLN3-217ENST00000565354 RGS1Q08116 209 aa16.41■□□□□ 0.22
CLN3-217ENST00000565354 DNASE1L3Q13609 305 aa16.41■□□□□ 0.22
CLN3-217ENST00000565354 DOC2AQ14183 400 aa16.41■□□□□ 0.22
CLN3-217ENST00000565354 ATP1A1-AS1Q5TC04 95 aa16.41■□□□□ 0.22
CLN3-217ENST00000565354 GARNL3Q5VVW2 1013 aa16.41■□□□□ 0.22
CLN3-217ENST00000565354 METTL2BQ6P1Q9 378 aaKnown RBP16.41■□□□□ 0.22
CLN3-217ENST00000565354 TRABD2AQ86V40 505 aa16.41■□□□□ 0.22
CLN3-217ENST00000565354 METTL27Q8N6F8 245 aaPredicted RBP16.41■□□□□ 0.22
CLN3-217ENST00000565354 TEX19Q8NA77 164 aa16.41■□□□□ 0.22
CLN3-217ENST00000565354 ZNF740Q8NDX6 193 aa16.41■□□□□ 0.22
CLN3-217ENST00000565354 TTLQ8NG68 377 aa16.41■□□□□ 0.22
CLN3-217ENST00000565354 CCT6BQ92526 530 aa16.41■□□□□ 0.22
CLN3-217ENST00000565354 CHST8Q9H2A9 424 aa16.41■□□□□ 0.22
CLN3-217ENST00000565354 SPNS1Q9H2V7 528 aa16.41■□□□□ 0.22
CLN3-217ENST00000565354 EHD1Q9H4M9 534 aa16.41■□□□□ 0.22
CLN3-217ENST00000565354 IFT80Q9P2H3 777 aaPredicted RBP16.41■□□□□ 0.22
CLN3-217ENST00000565354 MID2Q9UJV3 735 aa16.41■□□□□ 0.22
CLN3-217ENST00000565354 KCNMB2Q9Y691 235 aa16.41■□□□□ 0.22
CLN3-217ENST00000565354 A8MT66 165 aa16.4■□□□□ 0.22
CLN3-217ENST00000565354 C21orf140B9A014 251 aa16.4■□□□□ 0.22
CLN3-217ENST00000565354 P2RX6O15547 441 aa16.4■□□□□ 0.22
CLN3-217ENST00000565354 PRPF4O43172 522 aaKnown RBP eCLIP16.4■□□□□ 0.22
CLN3-217ENST00000565354 AGFG2O95081 481 aa16.4■□□□□ 0.22
CLN3-217ENST00000565354 MYL2P10916 166 aa16.4■□□□□ 0.22
CLN3-217ENST00000565354 NR1D1P20393 614 aa16.4■□□□□ 0.22
CLN3-217ENST00000565354 ATP5F1P24539 256 aaPredicted RBP16.4■□□□□ 0.22
CLN3-217ENST00000565354 CRHR1P34998 444 aa16.4■□□□□ 0.22
CLN3-217ENST00000565354 AHRP35869 848 aa16.4■□□□□ 0.22
CLN3-217ENST00000565354 EMP3P54852 163 aa16.4■□□□□ 0.22
CLN3-217ENST00000565354 SLC18A2Q05940 514 aa16.4■□□□□ 0.22
CLN3-217ENST00000565354 SLC9A5Q14940 896 aa16.4■□□□□ 0.22
CLN3-217ENST00000565354 PRTGQ2VWP7 1150 aa16.4■□□□□ 0.22
CLN3-217ENST00000565354 BEND6Q5SZJ8 279 aaPredicted RBP16.4■□□□□ 0.22
CLN3-217ENST00000565354 MLIPQ5VWP3 458 aa16.4■□□□□ 0.22
CLN3-217ENST00000565354 TCTN3Q6NUS6 607 aa16.4■□□□□ 0.22
CLN3-217ENST00000565354 LRIG3Q6UXM1 1119 aa16.4■□□□□ 0.22
CLN3-217ENST00000565354 TMIGD1Q6UXZ0 262 aa16.4■□□□□ 0.22
CLN3-217ENST00000565354 GOLGA7Q7Z5G4 137 aa16.4■□□□□ 0.22
CLN3-217ENST00000565354 VN1R4Q7Z5H5 301 aa16.4■□□□□ 0.22
CLN3-217ENST00000565354 SLC22A9Q8IVM8 553 aa16.4■□□□□ 0.22
CLN3-217ENST00000565354 TRPV3Q8NET8 790 aa16.4■□□□□ 0.22
CLN3-217ENST00000565354 MYRIPQ8NFW9 859 aa16.4■□□□□ 0.22
CLN3-217ENST00000565354 ZCCHC10Q8TBK6 192 aa16.4■□□□□ 0.22
CLN3-217ENST00000565354 UBE2E3Q969T4 207 aa16.4■□□□□ 0.22
CLN3-217ENST00000565354 APOPT1Q96IL0 206 aa16.4■□□□□ 0.22
CLN3-217ENST00000565354 GBP5Q96PP8 586 aa16.4■□□□□ 0.22
CLN3-217ENST00000565354 SARGQ9BW04 601 aa16.4■□□□□ 0.22
CLN3-217ENST00000565354 PITHD1Q9GZP4 211 aaPredicted RBP16.4■□□□□ 0.22
CLN3-217ENST00000565354 IPPKQ9H8X2 491 aa16.4■□□□□ 0.22
CLN3-217ENST00000565354 ACTR8Q9H981 624 aa16.4■□□□□ 0.22
CLN3-217ENST00000565354 SYNPO2LQ9H987 977 aa16.4■□□□□ 0.22
CLN3-217ENST00000565354 SENP1Q9P0U3 644 aa16.4■□□□□ 0.22
CLN3-217ENST00000565354 ZFP69BQ9UJL9 534 aa16.4■□□□□ 0.22
CLN3-217ENST00000565354 CDC14AQ9UNH5 594 aa16.4■□□□□ 0.22
CLN3-217ENST00000565354 CRYBG3Q68DQ2 2970 aa16.4■□□□□ 0.22
CLN3-217ENST00000565354 LRBAP50851 2863 aa16.4■□□□□ 0.22
CLN3-217ENST00000565354 HIVEP3Q5T1R4 2406 aa16.39■□□□□ 0.21
CLN3-217ENST00000565354 URADA6NGE7 173 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms