RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 IFNL1Q8IU54 200 aa12.73□□□□□ -0.37
CLN3-210ENST00000563874 C1orf52Q8N6N3 182 aaKnown RBP12.73□□□□□ -0.37
CLN3-210ENST00000563874 DCAF4L2Q8NA75 395 aa12.73□□□□□ -0.37
CLN3-210ENST00000563874 OR4K1Q8NGD4 311 aa12.73□□□□□ -0.37
CLN3-210ENST00000563874 GTPBP3Q969Y2 492 aaKnown RBP12.73□□□□□ -0.37
CLN3-210ENST00000563874 CCM2Q9BSQ5 444 aa12.73□□□□□ -0.37
CLN3-210ENST00000563874 DOHHQ9BU89 302 aa12.73□□□□□ -0.37
CLN3-210ENST00000563874 TP63Q9H3D4 680 aaPredicted RBP12.73□□□□□ -0.37
CLN3-210ENST00000563874 ANKHQ9HCJ1 492 aa12.73□□□□□ -0.37
CLN3-210ENST00000563874 MS4A12Q9NXJ0 267 aa12.73□□□□□ -0.37
CLN3-210ENST00000563874 PCDHGB6Q9Y5F9 930 aa12.73□□□□□ -0.37
CLN3-210ENST00000563874 CBSLP0DN79 551 aa12.72□□□□□ -0.37
CLN3-210ENST00000563874 JUPP14923 745 aa12.72□□□□□ -0.37
CLN3-210ENST00000563874 CBSP35520 551 aa12.72□□□□□ -0.37
CLN3-210ENST00000563874 TUFMP49411 452 aaKnown RBP12.72□□□□□ -0.37
CLN3-210ENST00000563874 VEZF1Q14119 521 aa12.72□□□□□ -0.37
CLN3-210ENST00000563874 ZNF648Q5T619 568 aaPredicted RBP12.72□□□□□ -0.37
CLN3-210ENST00000563874 CPTPQ5TA50 214 aa12.72□□□□□ -0.37
CLN3-210ENST00000563874 RETSATQ6NUM9 610 aa12.72□□□□□ -0.37
CLN3-210ENST00000563874 PNCKQ6P2M8 343 aa12.72□□□□□ -0.37
CLN3-210ENST00000563874 HS6ST3Q8IZP7 471 aa12.72□□□□□ -0.37
CLN3-210ENST00000563874 LGI4Q8N135 537 aa12.72□□□□□ -0.37
CLN3-210ENST00000563874 ARL14EPQ8N8R7 260 aaPredicted RBP12.72□□□□□ -0.37
CLN3-210ENST00000563874 OR8J2Q8NGG1 315 aa12.72□□□□□ -0.37
CLN3-210ENST00000563874 C2orf49Q9BVC5 232 aaPredicted RBP12.72□□□□□ -0.37
CLN3-210ENST00000563874 TMEM121BQ9BXQ6 578 aaPredicted RBP12.72□□□□□ -0.37
CLN3-210ENST00000563874 FAM120CQ9NX05 1096 aaKnown RBP12.72□□□□□ -0.37
CLN3-210ENST00000563874 IMPAD1Q9NX62 359 aa12.72□□□□□ -0.37
CLN3-210ENST00000563874 KLHL3Q9UH77 587 aa12.72□□□□□ -0.37
CLN3-210ENST00000563874 OGDHLQ9ULD0 1010 aa12.72□□□□□ -0.37
CLN3-210ENST00000563874 TBKBP1A7MCY6 615 aa12.72□□□□□ -0.37
CLN3-210ENST00000563874 HAT1O14929 419 aa12.72□□□□□ -0.37
CLN3-210ENST00000563874 KMOO15229 486 aa12.72□□□□□ -0.37
CLN3-210ENST00000563874 CYP7B1O75881 506 aa12.72□□□□□ -0.37
CLN3-210ENST00000563874 OR56A5P0C7T3 313 aa12.72□□□□□ -0.37
CLN3-210ENST00000563874 CTSOP43234 321 aaPredicted RBP12.72□□□□□ -0.37
CLN3-210ENST00000563874 PTSQ03393 145 aa12.72□□□□□ -0.37
CLN3-210ENST00000563874 DMPKQ09013 629 aa12.72□□□□□ -0.37
CLN3-210ENST00000563874 SMARCB1Q12824 385 aa12.72□□□□□ -0.37
CLN3-210ENST00000563874 DOC2BQ14184 412 aa12.72□□□□□ -0.37
CLN3-210ENST00000563874 C10orf62Q5T681 223 aaPredicted RBP12.72□□□□□ -0.37
CLN3-210ENST00000563874 RSBN1Q5VWQ0 802 aaPredicted RBP12.72□□□□□ -0.37
CLN3-210ENST00000563874 TCAIMQ8N3R3 496 aa12.72□□□□□ -0.37
CLN3-210ENST00000563874 KBTBD8Q8NFY9 601 aa12.72□□□□□ -0.37
CLN3-210ENST00000563874 EHD3Q9NZN3 535 aa12.72□□□□□ -0.37
CLN3-210ENST00000563874 DUSP12Q9UNI6 340 aa12.72□□□□□ -0.37
CLN3-210ENST00000563874 IFT52Q9Y366 437 aa12.72□□□□□ -0.37
CLN3-210ENST00000563874 LINC00854A0A1B0GVQ3 168 aa12.71□□□□□ -0.37
CLN3-210ENST00000563874 GNG14A0A1W2PPG7 69 aa12.71□□□□□ -0.37
CLN3-210ENST00000563874 KIAA0513O60268 411 aa12.71□□□□□ -0.37
CLN3-210ENST00000563874 ZNF821O75541 412 aaPredicted RBP12.71□□□□□ -0.37
CLN3-210ENST00000563874 MED26O95402 600 aa12.71□□□□□ -0.37
CLN3-210ENST00000563874 ANXA4P09525 319 aaPredicted RBP12.71□□□□□ -0.37
CLN3-210ENST00000563874 ACLYP53396 1101 aa12.71□□□□□ -0.37
CLN3-210ENST00000563874 CSNK2BP67870 215 aa12.71□□□□□ -0.37
CLN3-210ENST00000563874 ABRQ12979 859 aa12.71□□□□□ -0.37
CLN3-210ENST00000563874 DOC2AQ14183 400 aa12.71□□□□□ -0.37
CLN3-210ENST00000563874 GANABQ14697 944 aaKnown RBP12.71□□□□□ -0.37
CLN3-210ENST00000563874 TXNDC8Q6A555 127 aa12.71□□□□□ -0.37
CLN3-210ENST00000563874 MSANTD1Q6ZTZ1 278 aa12.71□□□□□ -0.37
CLN3-210ENST00000563874 HJURPQ8NCD3 748 aaPredicted RBP12.71□□□□□ -0.37
CLN3-210ENST00000563874 B3GNT7Q8NFL0 401 aa12.71□□□□□ -0.37
CLN3-210ENST00000563874 TCF25Q9BQ70 676 aa12.71□□□□□ -0.37
CLN3-210ENST00000563874 CLSTN3Q9BQT9 956 aa12.71□□□□□ -0.37
CLN3-210ENST00000563874 NUAK2Q9H093 628 aa12.71□□□□□ -0.37
CLN3-210ENST00000563874 RHCGQ9UBD6 479 aa12.71□□□□□ -0.37
CLN3-210ENST00000563874 ACSL6Q9UKU0 697 aa12.71□□□□□ -0.37
CLN3-210ENST00000563874 TMPRSS11EQ9UL52 423 aa12.71□□□□□ -0.37
CLN3-210ENST00000563874 LRFN2Q9ULH4 789 aa12.71□□□□□ -0.37
CLN3-210ENST00000563874 PCDHGA2Q9Y5H1 932 aa12.71□□□□□ -0.37
CLN3-210ENST00000563874 PRAMEF25A6NGN4 478 aa12.71□□□□□ -0.38
CLN3-210ENST00000563874 OR2AG2A6NM03 316 aa12.71□□□□□ -0.38
CLN3-210ENST00000563874 SCAMP2O15127 329 aaKnown RBP12.71□□□□□ -0.38
CLN3-210ENST00000563874 DYRK3O43781 588 aa12.71□□□□□ -0.38
CLN3-210ENST00000563874 AOC2O75106 756 aa12.71□□□□□ -0.38
CLN3-210ENST00000563874 CCNKO75909 580 aa12.71□□□□□ -0.38
CLN3-210ENST00000563874 PTTG1O95997 202 aa12.71□□□□□ -0.38
CLN3-210ENST00000563874 C8GP07360 202 aa12.71□□□□□ -0.38
CLN3-210ENST00000563874 POU1F1P28069 291 aa12.71□□□□□ -0.38
CLN3-210ENST00000563874 SERPINA4P29622 427 aa12.71□□□□□ -0.38
CLN3-210ENST00000563874 ZNF45Q02386 682 aa12.71□□□□□ -0.38
CLN3-210ENST00000563874 TSTQ16762 297 aaKnown RBP12.71□□□□□ -0.38
CLN3-210ENST00000563874 CCSMST1Q4G0I0 132 aa12.71□□□□□ -0.38
CLN3-210ENST00000563874 SPANXN2Q5MJ10 180 aa12.71□□□□□ -0.38
CLN3-210ENST00000563874 TUBA3EQ6PEY2 450 aa12.71□□□□□ -0.38
CLN3-210ENST00000563874 OR4A15Q8NGL6 344 aa12.71□□□□□ -0.38
CLN3-210ENST00000563874 ZNF486Q96H40 463 aaPredicted RBP12.71□□□□□ -0.38
CLN3-210ENST00000563874 CHST8Q9H2A9 424 aa12.71□□□□□ -0.38
CLN3-210ENST00000563874 NEK6Q9HC98 313 aa12.71□□□□□ -0.38
CLN3-210ENST00000563874 PADI2Q9Y2J8 665 aa12.71□□□□□ -0.38
CLN3-210ENST00000563874 UGT2A1Q9Y4X1 527 aa12.71□□□□□ -0.38
CLN3-210ENST00000563874 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP12.7□□□□□ -0.38
CLN3-210ENST00000563874 C1orf226A1L170 272 aa12.7□□□□□ -0.38
CLN3-210ENST00000563874 TMEM202A6NGA9 273 aa12.7□□□□□ -0.38
CLN3-210ENST00000563874 E9PQ18 207 aa12.7□□□□□ -0.38
CLN3-210ENST00000563874 PCDH17O14917 1159 aa12.7□□□□□ -0.38
CLN3-210ENST00000563874 CD70P32970 193 aa12.7□□□□□ -0.38
CLN3-210ENST00000563874 HNMTP50135 292 aa12.7□□□□□ -0.38
CLN3-210ENST00000563874 UGT2B15P54855 530 aa12.7□□□□□ -0.38
CLN3-210ENST00000563874 SELENOWP63302 87 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms