RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 PRICKLE2Q7Z3G6 844 aa12.7□□□□□ -0.38
CLK3-213ENST00000563842 PTRH1Q86Y79 214 aaKnown RBP12.7□□□□□ -0.38
CLK3-213ENST00000563842 PRSS58Q8IYP2 241 aa12.7□□□□□ -0.38
CLK3-213ENST00000563842 GALNT16Q8N428 558 aa12.7□□□□□ -0.38
CLK3-213ENST00000563842 AMER3Q8N944 861 aa12.7□□□□□ -0.38
CLK3-213ENST00000563842 SNX31Q8N9S9 440 aa12.7□□□□□ -0.38
CLK3-213ENST00000563842 KCT2Q8NC54 265 aa12.7□□□□□ -0.38
CLK3-213ENST00000563842 OR9A4Q8NGU2 314 aa12.7□□□□□ -0.38
CLK3-213ENST00000563842 ZCCHC10Q8TBK6 192 aa12.7□□□□□ -0.38
CLK3-213ENST00000563842 EXT2Q93063 718 aa12.7□□□□□ -0.38
CLK3-213ENST00000563842 NXNL1Q96CM4 212 aa12.7□□□□□ -0.38
CLK3-213ENST00000563842 ATOH8Q96SQ7 321 aa12.7□□□□□ -0.38
CLK3-213ENST00000563842 TMEM79Q9BSE2 394 aa12.7□□□□□ -0.38
CLK3-213ENST00000563842 CD244Q9BZW8 370 aa12.7□□□□□ -0.38
CLK3-213ENST00000563842 NT5DC2Q9H857 520 aa12.7□□□□□ -0.38
CLK3-213ENST00000563842 L2HGDHQ9H9P8 463 aa12.7□□□□□ -0.38
CLK3-213ENST00000563842 CLK4Q9HAZ1 481 aaKnown RBP12.7□□□□□ -0.38
CLK3-213ENST00000563842 MLXIPLQ9NP71 852 aa12.7□□□□□ -0.38
CLK3-213ENST00000563842 C5AR2Q9P296 337 aa12.7□□□□□ -0.38
CLK3-213ENST00000563842 HS3ST3B1Q9Y662 390 aa12.7□□□□□ -0.38
CLK3-213ENST00000563842 EXOC1LA0A1B0GW35 172 aa12.69□□□□□ -0.38
CLK3-213ENST00000563842 HMX2A2RU54 273 aa12.69□□□□□ -0.38
CLK3-213ENST00000563842 A6NL46 340 aa12.69□□□□□ -0.38
CLK3-213ENST00000563842 IDSB3KWA1 339 aa12.69□□□□□ -0.38
CLK3-213ENST00000563842 SOCS6O14544 535 aa12.69□□□□□ -0.38
CLK3-213ENST00000563842 CCNT2O60583 730 aaKnown RBP12.69□□□□□ -0.38
CLK3-213ENST00000563842 DPM1O60762 260 aa12.69□□□□□ -0.38
CLK3-213ENST00000563842 STATHP02808 62 aa12.69□□□□□ -0.38
CLK3-213ENST00000563842 SERPINA6P08185 405 aa12.69□□□□□ -0.38
CLK3-213ENST00000563842 ACPPP15309 386 aa12.69□□□□□ -0.38
CLK3-213ENST00000563842 ALOX12P18054 663 aa12.69□□□□□ -0.38
CLK3-213ENST00000563842 IL1RNP18510 177 aa12.69□□□□□ -0.38
CLK3-213ENST00000563842 CSRP3P50461 194 aa12.69□□□□□ -0.38
CLK3-213ENST00000563842 STXBP1P61764 594 aaKnown RBP12.69□□□□□ -0.38
CLK3-213ENST00000563842 DLG1Q12959 904 aa12.69□□□□□ -0.38
CLK3-213ENST00000563842 MYBPC3Q14896 1274 aa12.69□□□□□ -0.38
CLK3-213ENST00000563842 HIST2H2ACQ16777 129 aaPredicted RBP12.69□□□□□ -0.38
CLK3-213ENST00000563842 C18orf21Q32NC0 220 aaPredicted RBP12.69□□□□□ -0.38
CLK3-213ENST00000563842 PAGE2BQ5JRK9 111 aa12.69□□□□□ -0.38
CLK3-213ENST00000563842 VWA5B1Q5TIE3 1220 aa12.69□□□□□ -0.38
CLK3-213ENST00000563842 HIST2H2AA3Q6FI13 130 aa12.69□□□□□ -0.38
CLK3-213ENST00000563842 KIRREL2Q6UWL6 708 aa12.69□□□□□ -0.38
CLK3-213ENST00000563842 TMIGD1Q6UXZ0 262 aa12.69□□□□□ -0.38
CLK3-213ENST00000563842 SLCO4C1Q6ZQN7 724 aa12.69□□□□□ -0.38
CLK3-213ENST00000563842 CENPLQ8N0S6 344 aaPredicted RBP12.69□□□□□ -0.38
CLK3-213ENST00000563842 ZNF740Q8NDX6 193 aa12.69□□□□□ -0.38
CLK3-213ENST00000563842 FDCSPQ8NFU4 85 aa12.69□□□□□ -0.38
CLK3-213ENST00000563842 OR51Q1Q8NH59 317 aa12.69□□□□□ -0.38
CLK3-213ENST00000563842 KCTD4Q8WVF5 259 aa12.69□□□□□ -0.38
CLK3-213ENST00000563842 METTL21AQ8WXB1 218 aa12.69□□□□□ -0.38
CLK3-213ENST00000563842 PTCD3Q96EY7 689 aaKnown RBP12.69□□□□□ -0.38
CLK3-213ENST00000563842 MACROD1Q9BQ69 325 aa12.69□□□□□ -0.38
CLK3-213ENST00000563842 EFCAB11Q9BUY7 163 aa12.69□□□□□ -0.38
CLK3-213ENST00000563842 VPS11Q9H270 941 aa12.69□□□□□ -0.38
CLK3-213ENST00000563842 OPTCQ9UBM4 332 aa12.69□□□□□ -0.38
CLK3-213ENST00000563842 FBXL4Q9UKA2 621 aa12.69□□□□□ -0.38
CLK3-213ENST00000563842 MRPS2Q9Y399 296 aaKnown RBP12.69□□□□□ -0.38
CLK3-213ENST00000563842 PCSK5Q92824 1860 aa12.68□□□□□ -0.38
CLK3-213ENST00000563842 ANKDD1BA6NHY2 528 aa12.68□□□□□ -0.38
CLK3-213ENST00000563842 K7EPI3 171 aa12.68□□□□□ -0.38
CLK3-213ENST00000563842 SGK494L7N484 410 aa12.68□□□□□ -0.38
CLK3-213ENST00000563842 KLHL18O94889 574 aa12.68□□□□□ -0.38
CLK3-213ENST00000563842 BMP10O95393 424 aa12.68□□□□□ -0.38
CLK3-213ENST00000563842 HPP00738 406 aa12.68□□□□□ -0.38
CLK3-213ENST00000563842 ALDOAP04075 364 aaKnown RBP12.68□□□□□ -0.38
CLK3-213ENST00000563842 SNRPAP09012 282 aaKnown RBP12.68□□□□□ -0.38
CLK3-213ENST00000563842 RBP1P09455 135 aa12.68□□□□□ -0.38
CLK3-213ENST00000563842 COL6A2P12110 1019 aa12.68□□□□□ -0.38
CLK3-213ENST00000563842 PLA2G2AP14555 144 aa12.68□□□□□ -0.38
CLK3-213ENST00000563842 ITGA3P26006 1051 aa12.68□□□□□ -0.38
CLK3-213ENST00000563842 VARSP26640 1264 aaKnown RBP12.68□□□□□ -0.38
CLK3-213ENST00000563842 CASRP41180 1078 aa12.68□□□□□ -0.38
CLK3-213ENST00000563842 FOXL2P58012 376 aa12.68□□□□□ -0.38
CLK3-213ENST00000563842 AP2B1P63010 937 aa12.68□□□□□ -0.38
CLK3-213ENST00000563842 SLBPQ14493 270 aaKnown RBP eCLIP12.68□□□□□ -0.38
CLK3-213ENST00000563842 TSNAXIP1Q2TAA8 658 aa12.68□□□□□ -0.38
CLK3-213ENST00000563842 XKR6Q5GH73 641 aa12.68□□□□□ -0.38
CLK3-213ENST00000563842 ZC3H7AQ8IWR0 971 aaKnown RBP12.68□□□□□ -0.38
CLK3-213ENST00000563842 AFAP1L2Q8N4X5 818 aa12.68□□□□□ -0.38
CLK3-213ENST00000563842 ANKRD53Q8N9V6 530 aa12.68□□□□□ -0.38
CLK3-213ENST00000563842 OR11G2Q8NGC1 345 aa12.68□□□□□ -0.38
CLK3-213ENST00000563842 UBTD2Q8WUN7 234 aa12.68□□□□□ -0.38
CLK3-213ENST00000563842 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.68□□□□□ -0.38
CLK3-213ENST00000563842 TM9SF4Q92544 642 aa12.68□□□□□ -0.38
CLK3-213ENST00000563842 UBE2E3Q969T4 207 aa12.68□□□□□ -0.38
CLK3-213ENST00000563842 ISL2Q96A47 359 aa12.68□□□□□ -0.38
CLK3-213ENST00000563842 MTBPQ96DY7 904 aa12.68□□□□□ -0.38
CLK3-213ENST00000563842 OR1F2PQ96R84 312 aa12.68□□□□□ -0.38
CLK3-213ENST00000563842 SMAD5Q99717 465 aaKnown RBP12.68□□□□□ -0.38
CLK3-213ENST00000563842 CCDC77Q9BR77 488 aa12.68□□□□□ -0.38
CLK3-213ENST00000563842 SLC6A16Q9GZN6 736 aa12.68□□□□□ -0.38
CLK3-213ENST00000563842 SPNS1Q9H2V7 528 aa12.68□□□□□ -0.38
CLK3-213ENST00000563842 COPG2Q9UBF2 871 aa12.68□□□□□ -0.38
CLK3-213ENST00000563842 C19orf25Q9UFG5 118 aaPredicted RBP12.68□□□□□ -0.38
CLK3-213ENST00000563842 MKL2Q9ULH7 1088 aa12.68□□□□□ -0.38
CLK3-213ENST00000563842 TMCO1Q9UM00 188 aa12.68□□□□□ -0.38
CLK3-213ENST00000563842 NAALAD2Q9Y3Q0 740 aa12.68□□□□□ -0.38
CLK3-213ENST00000563842 MYO18BQ8IUG5 2567 aa12.68□□□□□ -0.38
CLK3-213ENST00000563842 USP9XQ93008 2570 aaPredicted RBP12.67□□□□□ -0.38
CLK3-213ENST00000563842 A0A088AWK7 358 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms