RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 SCTRP47872 440 aa16.22■□□□□ 0.19
VPS9D1-203ENST00000563798 ARL4CP56559 192 aa16.22■□□□□ 0.19
VPS9D1-203ENST00000563798 SKP1P63208 163 aa16.22■□□□□ 0.19
VPS9D1-203ENST00000563798 DR1Q01658 176 aa16.22■□□□□ 0.19
VPS9D1-203ENST00000563798 ZRSR2Q15696 482 aaKnown RBP16.22■□□□□ 0.19
VPS9D1-203ENST00000563798 BTBD16Q32M84 506 aa16.22■□□□□ 0.19
VPS9D1-203ENST00000563798 TMEM207Q6UWW9 146 aa16.22■□□□□ 0.19
VPS9D1-203ENST00000563798 TBC1D19Q8N5T2 526 aa16.22■□□□□ 0.19
VPS9D1-203ENST00000563798 ZNF740Q8NDX6 193 aa16.22■□□□□ 0.19
VPS9D1-203ENST00000563798 ZCCHC10Q8TBK6 192 aa16.22■□□□□ 0.19
VPS9D1-203ENST00000563798 SLC5A11Q8WWX8 675 aa16.22■□□□□ 0.19
VPS9D1-203ENST00000563798 NEIL2Q969S2 332 aa16.22■□□□□ 0.19
VPS9D1-203ENST00000563798 ALKBH8Q96BT7 664 aaKnown RBP16.22■□□□□ 0.19
VPS9D1-203ENST00000563798 MOCOSQ96EN8 888 aa16.22■□□□□ 0.19
VPS9D1-203ENST00000563798 GRPEL1Q9HAV7 217 aa16.22■□□□□ 0.19
VPS9D1-203ENST00000563798 ZFP69BQ9UJL9 534 aa16.22■□□□□ 0.19
VPS9D1-203ENST00000563798 IKZF3Q9UKT9 509 aa16.22■□□□□ 0.19
VPS9D1-203ENST00000563798 ITPR2Q14571 2701 aa16.22■□□□□ 0.19
VPS9D1-203ENST00000563798 OR2W5A6NFC9 320 aa16.21■□□□□ 0.19
VPS9D1-203ENST00000563798 OR1F1O43749 312 aa16.21■□□□□ 0.19
VPS9D1-203ENST00000563798 RASAL1O95294 804 aa16.21■□□□□ 0.19
VPS9D1-203ENST00000563798 ALOX12P18054 663 aa16.21■□□□□ 0.19
VPS9D1-203ENST00000563798 COL8A1P27658 744 aa16.21■□□□□ 0.19
VPS9D1-203ENST00000563798 PGGT1BP53609 377 aa16.21■□□□□ 0.19
VPS9D1-203ENST00000563798 ITGA8P53708 1063 aa16.21■□□□□ 0.19
VPS9D1-203ENST00000563798 CDKL1Q00532 357 aa16.21■□□□□ 0.19
VPS9D1-203ENST00000563798 ZNF33BQ06732 778 aa16.21■□□□□ 0.19
VPS9D1-203ENST00000563798 MGAT5Q09328 741 aa16.21■□□□□ 0.19
VPS9D1-203ENST00000563798 ILF2Q12905 390 aaKnown RBP16.21■□□□□ 0.19
VPS9D1-203ENST00000563798 ACER2Q5QJU3 275 aa16.21■□□□□ 0.19
VPS9D1-203ENST00000563798 CATSPEREQ5SY80 951 aa16.21■□□□□ 0.19
VPS9D1-203ENST00000563798 MFSD4BQ5TF39 518 aa16.21■□□□□ 0.19
VPS9D1-203ENST00000563798 ZNF787Q6DD87 383 aa16.21■□□□□ 0.19
VPS9D1-203ENST00000563798 SLC34A3Q8N130 599 aa16.21■□□□□ 0.19
VPS9D1-203ENST00000563798 LGI4Q8N135 537 aa16.21■□□□□ 0.19
VPS9D1-203ENST00000563798 NKAPQ8N5F7 415 aaKnown RBP16.21■□□□□ 0.19
VPS9D1-203ENST00000563798 SUN3Q8TAQ9 357 aa16.21■□□□□ 0.19
VPS9D1-203ENST00000563798 TBC1D20Q96BZ9 403 aa16.21■□□□□ 0.19
VPS9D1-203ENST00000563798 CFAP36Q96G28 342 aa16.21■□□□□ 0.19
VPS9D1-203ENST00000563798 MAGEB10Q96LZ2 347 aaPredicted RBP16.21■□□□□ 0.19
VPS9D1-203ENST00000563798 MCMBPQ9BTE3 642 aa16.21■□□□□ 0.19
VPS9D1-203ENST00000563798 PELI2Q9HAT8 420 aa16.21■□□□□ 0.19
VPS9D1-203ENST00000563798 CENPEQ02224 2701 aa16.2■□□□□ 0.18
VPS9D1-203ENST00000563798 CELSR2Q9HCU4 2923 aa16.2■□□□□ 0.18
VPS9D1-203ENST00000563798 SCN2AQ99250 2005 aa16.2■□□□□ 0.18
VPS9D1-203ENST00000563798 CCDC188H7C350 402 aa16.2■□□□□ 0.18
VPS9D1-203ENST00000563798 NDUFS4O43181 175 aa16.2■□□□□ 0.18
VPS9D1-203ENST00000563798 F10P00742 488 aa16.2■□□□□ 0.18
VPS9D1-203ENST00000563798 UQCRHP07919 91 aa16.2■□□□□ 0.18
VPS9D1-203ENST00000563798 FHP07954 510 aa16.2■□□□□ 0.18
VPS9D1-203ENST00000563798 REEP5Q00765 189 aa16.2■□□□□ 0.18
VPS9D1-203ENST00000563798 MEF2AQ02078 507 aaPredicted RBP16.2■□□□□ 0.18
VPS9D1-203ENST00000563798 RGS1Q08116 209 aa16.2■□□□□ 0.18
VPS9D1-203ENST00000563798 CSHL1Q14406 222 aa16.2■□□□□ 0.18
VPS9D1-203ENST00000563798 ABRAXAS2Q15018 415 aa16.2■□□□□ 0.18
VPS9D1-203ENST00000563798 NSDHLQ15738 373 aa16.2■□□□□ 0.18
VPS9D1-203ENST00000563798 ZNF800Q2TB10 664 aaPredicted RBP eCLIP16.2■□□□□ 0.18
VPS9D1-203ENST00000563798 SFT2D3Q587I9 215 aa16.2■□□□□ 0.18
VPS9D1-203ENST00000563798 HP1BP3Q5SSJ5 553 aaPredicted RBP16.2■□□□□ 0.18
VPS9D1-203ENST00000563798 PAPD4Q6PIY7 484 aaKnown RBP16.2■□□□□ 0.18
VPS9D1-203ENST00000563798 ZC3HC1Q86WB0 502 aaKnown RBP16.2■□□□□ 0.18
VPS9D1-203ENST00000563798 KLHL7Q8IXQ5 586 aa16.2■□□□□ 0.18
VPS9D1-203ENST00000563798 KLHDC8AQ8IYD2 350 aa16.2■□□□□ 0.18
VPS9D1-203ENST00000563798 MDS2Q8NDY4 140 aa16.2■□□□□ 0.18
VPS9D1-203ENST00000563798 OR5T3Q8NGG3 340 aa16.2■□□□□ 0.18
VPS9D1-203ENST00000563798 PEX11GQ96HA9 241 aa16.2■□□□□ 0.18
VPS9D1-203ENST00000563798 LPAR4Q99677 370 aa16.2■□□□□ 0.18
VPS9D1-203ENST00000563798 NPAS2Q99743 824 aa16.2■□□□□ 0.18
VPS9D1-203ENST00000563798 SLC6A16Q9GZN6 736 aa16.2■□□□□ 0.18
VPS9D1-203ENST00000563798 SPNS1Q9H2V7 528 aa16.2■□□□□ 0.18
VPS9D1-203ENST00000563798 ZFATQ9P243 1243 aa16.2■□□□□ 0.18
VPS9D1-203ENST00000563798 PSAT1Q9Y617 370 aa16.2■□□□□ 0.18
VPS9D1-203ENST00000563798 SAR1BQ9Y6B6 198 aa16.2■□□□□ 0.18
VPS9D1-203ENST00000563798 ZGRF1Q86YA3 2104 aa16.19■□□□□ 0.18
VPS9D1-203ENST00000563798 USP27XA6NNY8 438 aa16.19■□□□□ 0.18
VPS9D1-203ENST00000563798 A8MUI8 341 aa16.19■□□□□ 0.18
VPS9D1-203ENST00000563798 CHST10O43529 356 aa16.19■□□□□ 0.18
VPS9D1-203ENST00000563798 GUCA1CO95843 209 aa16.19■□□□□ 0.18
VPS9D1-203ENST00000563798 SMIM10L1P0DMW3 83 aa16.19■□□□□ 0.18
VPS9D1-203ENST00000563798 JAK1P23458 1154 aa16.19■□□□□ 0.18
VPS9D1-203ENST00000563798 MST1P26927 711 aa16.19■□□□□ 0.18
VPS9D1-203ENST00000563798 TUBA3CQ13748 450 aa16.19■□□□□ 0.18
VPS9D1-203ENST00000563798 USP10Q14694 798 aaKnown RBP16.19■□□□□ 0.18
VPS9D1-203ENST00000563798 MEP1AQ16819 746 aa16.19■□□□□ 0.18
VPS9D1-203ENST00000563798 DEFB134Q4QY38 66 aa16.19■□□□□ 0.18
VPS9D1-203ENST00000563798 TUBA3EQ6PEY2 450 aa16.19■□□□□ 0.18
VPS9D1-203ENST00000563798 NXPE4Q6UWF7 544 aa16.19■□□□□ 0.18
VPS9D1-203ENST00000563798 ABHD13Q7L211 337 aa16.19■□□□□ 0.18
VPS9D1-203ENST00000563798 THOC6Q86W42 341 aaKnown RBP16.19■□□□□ 0.18
VPS9D1-203ENST00000563798 BEST3Q8N1M1 668 aa16.19■□□□□ 0.18
VPS9D1-203ENST00000563798 ANKRD53Q8N9V6 530 aa16.19■□□□□ 0.18
VPS9D1-203ENST00000563798 TRPV3Q8NET8 790 aa16.19■□□□□ 0.18
VPS9D1-203ENST00000563798 UTP15Q8TED0 518 aaKnown RBP16.19■□□□□ 0.18
VPS9D1-203ENST00000563798 SMIM10Q96HG1 83 aa16.19■□□□□ 0.18
VPS9D1-203ENST00000563798 KCNK13Q9HB14 408 aa16.19■□□□□ 0.18
VPS9D1-203ENST00000563798 POPDC3Q9HBV1 291 aa16.19■□□□□ 0.18
VPS9D1-203ENST00000563798 NSMCE4AQ9NXX6 385 aa16.19■□□□□ 0.18
VPS9D1-203ENST00000563798 RNF14Q9UBS8 474 aa16.19■□□□□ 0.18
VPS9D1-203ENST00000563798 CROCCQ5TZA2 2017 aa16.18■□□□□ 0.18
VPS9D1-203ENST00000563798 SCN3AQ9NY46 2000 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms