RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 IL1RNP18510 177 aa9.31□□□□□ -0.92
CLK3-208ENST00000562626 EIF2S3P41091 472 aaKnown RBP9.31□□□□□ -0.92
CLK3-208ENST00000562626 HNF4AP41235 474 aa9.31□□□□□ -0.92
CLK3-208ENST00000562626 SERPINB4P48594 390 aa9.31□□□□□ -0.92
CLK3-208ENST00000562626 HTR6P50406 440 aa9.31□□□□□ -0.92
CLK3-208ENST00000562626 NEK2P51955 445 aa9.31□□□□□ -0.92
CLK3-208ENST00000562626 CCNG1P51959 295 aa9.31□□□□□ -0.92
CLK3-208ENST00000562626 EFNA3P52797 238 aa9.31□□□□□ -0.92
CLK3-208ENST00000562626 PCBP4P57723 403 aaKnown RBP9.31□□□□□ -0.92
CLK3-208ENST00000562626 DNAJB13P59910 316 aa9.31□□□□□ -0.92
CLK3-208ENST00000562626 RPS18P62269 152 aaKnown RBP9.31□□□□□ -0.92
CLK3-208ENST00000562626 GRM7Q14831 915 aa9.31□□□□□ -0.92
CLK3-208ENST00000562626 NAA25Q14CX7 972 aa9.31□□□□□ -0.92
CLK3-208ENST00000562626 RBBP7Q16576 425 aa9.31□□□□□ -0.92
CLK3-208ENST00000562626 CPSF6Q16630 551 aaKnown RBP eCLIP9.31□□□□□ -0.92
CLK3-208ENST00000562626 SYT16Q17RD7 645 aa9.31□□□□□ -0.92
CLK3-208ENST00000562626 TOR1AIP1Q5JTV8 583 aa9.31□□□□□ -0.92
CLK3-208ENST00000562626 TMEM164Q5U3C3 297 aa9.31□□□□□ -0.92
CLK3-208ENST00000562626 TMEM214Q6NUQ4 689 aaKnown RBP9.31□□□□□ -0.92
CLK3-208ENST00000562626 TLDC1Q6P9B6 456 aa9.31□□□□□ -0.92
CLK3-208ENST00000562626 BPHLQ86WA6 291 aaPredicted RBP9.31□□□□□ -0.92
CLK3-208ENST00000562626 GPR135Q8IZ08 494 aa9.31□□□□□ -0.92
CLK3-208ENST00000562626 NLGN4XQ8N0W4 816 aa9.31□□□□□ -0.92
CLK3-208ENST00000562626 AMER2Q8N7J2 671 aa9.31□□□□□ -0.92
CLK3-208ENST00000562626 AMER3Q8N944 861 aa9.31□□□□□ -0.92
CLK3-208ENST00000562626 ANKRD42Q8N9B4 389 aa9.31□□□□□ -0.92
CLK3-208ENST00000562626 L3MBTL4Q8NA19 623 aa9.31□□□□□ -0.92
CLK3-208ENST00000562626 KDF1Q8NAX2 398 aaPredicted RBP9.31□□□□□ -0.92
CLK3-208ENST00000562626 NLGN4YQ8NFZ3 816 aaPredicted RBP9.31□□□□□ -0.92
CLK3-208ENST00000562626 OR7G3Q8NG95 312 aa9.31□□□□□ -0.92
CLK3-208ENST00000562626 OR6Y1Q8NGX8 325 aa9.31□□□□□ -0.92
CLK3-208ENST00000562626 OR8K5Q8NH50 307 aa9.31□□□□□ -0.92
CLK3-208ENST00000562626 WDR20Q8TBZ3 569 aa9.31□□□□□ -0.92
CLK3-208ENST00000562626 RDH11Q8TC12 318 aa9.31□□□□□ -0.92
CLK3-208ENST00000562626 NT5CQ8TCD5 201 aa9.31□□□□□ -0.92
CLK3-208ENST00000562626 AGAP11Q8TF27 550 aa9.31□□□□□ -0.92
CLK3-208ENST00000562626 ZNF473Q8WTR7 871 aaKnown RBP9.31□□□□□ -0.92
CLK3-208ENST00000562626 CT55Q8WUE5 264 aa9.31□□□□□ -0.92
CLK3-208ENST00000562626 SLC13A3Q8WWT9 602 aa9.31□□□□□ -0.92
CLK3-208ENST00000562626 N4BP2L2Q92802 583 aaPredicted RBP9.31□□□□□ -0.92
CLK3-208ENST00000562626 CLIP3Q96DZ5 547 aa9.31□□□□□ -0.92
CLK3-208ENST00000562626 HBEGFQ99075 208 aa9.31□□□□□ -0.92
CLK3-208ENST00000562626 ZPBPQ9BS86 351 aa9.31□□□□□ -0.92
CLK3-208ENST00000562626 NTMT1Q9BV86 223 aa9.31□□□□□ -0.92
CLK3-208ENST00000562626 SLC6A16Q9GZN6 736 aa9.31□□□□□ -0.92
CLK3-208ENST00000562626 IQCGQ9H095 443 aaKnown RBP9.31□□□□□ -0.92
CLK3-208ENST00000562626 RHBGQ9H310 441 aa9.31□□□□□ -0.92
CLK3-208ENST00000562626 NT5DC2Q9H857 520 aa9.31□□□□□ -0.92
CLK3-208ENST00000562626 ACTR8Q9H981 624 aa9.31□□□□□ -0.92
CLK3-208ENST00000562626 KCNK9Q9NPC2 374 aa9.31□□□□□ -0.92
CLK3-208ENST00000562626 LHX9Q9NQ69 397 aa9.31□□□□□ -0.92
CLK3-208ENST00000562626 IL17BQ9UHF5 180 aa9.31□□□□□ -0.92
CLK3-208ENST00000562626 ZFP69BQ9UJL9 534 aa9.31□□□□□ -0.92
CLK3-208ENST00000562626 ANGPTL3Q9Y5C1 460 aa9.31□□□□□ -0.92
CLK3-208ENST00000562626 ACTL7BQ9Y614 415 aa9.31□□□□□ -0.92
CLK3-208ENST00000562626 MAU2Q9Y6X3 613 aa9.31□□□□□ -0.92
CLK3-208ENST00000562626 A0A0A6YYC8 382 aaPredicted RBP9.3□□□□□ -0.92
CLK3-208ENST00000562626 TMEM233B4DJY2 109 aa9.3□□□□□ -0.92
CLK3-208ENST00000562626 STMND1H3BQB6 276 aa9.3□□□□□ -0.92
CLK3-208ENST00000562626 I3L1I5 382 aaPredicted RBP9.3□□□□□ -0.92
CLK3-208ENST00000562626 ITM2AO43736 263 aa9.3□□□□□ -0.92
CLK3-208ENST00000562626 TRIM13O60858 407 aa9.3□□□□□ -0.92
CLK3-208ENST00000562626 LYPLA1O75608 230 aaPredicted RBP9.3□□□□□ -0.92
CLK3-208ENST00000562626 CLDN9O95484 217 aa9.3□□□□□ -0.92
CLK3-208ENST00000562626 CHRNGP07510 517 aa9.3□□□□□ -0.92
CLK3-208ENST00000562626 ZNF888P0CJ79 500 aaPredicted RBP9.3□□□□□ -0.92
CLK3-208ENST00000562626 SMIM10L1P0DMW3 83 aa9.3□□□□□ -0.92
CLK3-208ENST00000562626 PCNAP12004 261 aa9.3□□□□□ -0.92
CLK3-208ENST00000562626 GRK3P35626 688 aa9.3□□□□□ -0.92
CLK3-208ENST00000562626 AHRP35869 848 aa9.3□□□□□ -0.92
CLK3-208ENST00000562626 STAT5AP42229 794 aa9.3□□□□□ -0.92
CLK3-208ENST00000562626 ATP1A2P50993 1020 aa9.3□□□□□ -0.92
CLK3-208ENST00000562626 RAB8AP61006 207 aa9.3□□□□□ -0.92
CLK3-208ENST00000562626 OLR1P78380 273 aa9.3□□□□□ -0.92
CLK3-208ENST00000562626 MAT1AQ00266 395 aaKnown RBP9.3□□□□□ -0.92
CLK3-208ENST00000562626 DDX39BQ13838 428 aaKnown RBP9.3□□□□□ -0.92
CLK3-208ENST00000562626 ZRSR2Q15696 482 aaKnown RBP9.3□□□□□ -0.92
CLK3-208ENST00000562626 TCTE1Q5JU00 501 aa9.3□□□□□ -0.92
CLK3-208ENST00000562626 LIPMQ5VYY2 423 aa9.3□□□□□ -0.92
CLK3-208ENST00000562626 LIPJQ5W064 366 aa9.3□□□□□ -0.92
CLK3-208ENST00000562626 METTL2BQ6P1Q9 378 aaKnown RBP9.3□□□□□ -0.92
CLK3-208ENST00000562626 C6orf15Q6UXA7 325 aaPredicted RBP9.3□□□□□ -0.92
CLK3-208ENST00000562626 FRMD7Q6ZUT3 714 aa9.3□□□□□ -0.92
CLK3-208ENST00000562626 UBE3DQ7Z6J8 389 aa9.3□□□□□ -0.92
CLK3-208ENST00000562626 CROCCP2Q86T23 111 aa9.3□□□□□ -0.92
CLK3-208ENST00000562626 MYLK4Q86YV6 388 aaPredicted RBP9.3□□□□□ -0.92
CLK3-208ENST00000562626 SLC22A9Q8IVM8 553 aa9.3□□□□□ -0.92
CLK3-208ENST00000562626 SPACA3Q8IXA5 215 aa9.3□□□□□ -0.92
CLK3-208ENST00000562626 CACNA2D3Q8IZS8 1091 aa9.3□□□□□ -0.92
CLK3-208ENST00000562626 CNPY4Q8N129 248 aa9.3□□□□□ -0.92
CLK3-208ENST00000562626 AFAP1L2Q8N4X5 818 aa9.3□□□□□ -0.92
CLK3-208ENST00000562626 TTC29Q8NA56 475 aaPredicted RBP9.3□□□□□ -0.92
CLK3-208ENST00000562626 OR5T3Q8NGG3 340 aa9.3□□□□□ -0.92
CLK3-208ENST00000562626 OR9A4Q8NGU2 314 aa9.3□□□□□ -0.92
CLK3-208ENST00000562626 HUS1BQ8NHY5 278 aa9.3□□□□□ -0.92
CLK3-208ENST00000562626 MGARPQ8TDB4 240 aa9.3□□□□□ -0.92
CLK3-208ENST00000562626 UTP15Q8TED0 518 aaKnown RBP9.3□□□□□ -0.92
CLK3-208ENST00000562626 KCNE4Q8WWG9 221 aa9.3□□□□□ -0.92
CLK3-208ENST00000562626 MR1Q95460 341 aa9.3□□□□□ -0.92
CLK3-208ENST00000562626 RERGQ96A58 199 aaPredicted RBP9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms