RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 PSRC1Q6PGN9 363 aaPredicted RBP12.84□□□□□ -0.35
CLK3-206ENST00000562078 TIGD4Q8IY51 512 aa12.84□□□□□ -0.35
CLK3-206ENST00000562078 CHPFQ8IZ52 775 aa12.84□□□□□ -0.35
CLK3-206ENST00000562078 CAMKK1Q8N5S9 505 aa12.84□□□□□ -0.35
CLK3-206ENST00000562078 CDYL2Q8N8U2 506 aa12.84□□□□□ -0.35
CLK3-206ENST00000562078 C2CD4AQ8NCU7 369 aaPredicted RBP12.84□□□□□ -0.35
CLK3-206ENST00000562078 APH1BQ8WW43 257 aa12.84□□□□□ -0.35
CLK3-206ENST00000562078 ST8SIA4Q92187 359 aa12.84□□□□□ -0.35
CLK3-206ENST00000562078 ZNF583Q96ND8 569 aa12.84□□□□□ -0.35
CLK3-206ENST00000562078 ARNT2Q9HBZ2 717 aa12.84□□□□□ -0.35
CLK3-206ENST00000562078 FANCFQ9NPI8 374 aa12.84□□□□□ -0.35
CLK3-206ENST00000562078 DYRK4Q9NR20 520 aa12.84□□□□□ -0.35
CLK3-206ENST00000562078 MCUBQ9NWR8 336 aa12.84□□□□□ -0.35
CLK3-206ENST00000562078 ING3Q9NXR8 418 aa12.84□□□□□ -0.35
CLK3-206ENST00000562078 CXXC1Q9P0U4 656 aaPredicted RBP12.84□□□□□ -0.35
CLK3-206ENST00000562078 TRAV19A0A0A6YYK7 116 aa12.84□□□□□ -0.35
CLK3-206ENST00000562078 CCL22O00626 93 aa12.84□□□□□ -0.35
CLK3-206ENST00000562078 SLC19A1P41440 591 aa12.84□□□□□ -0.35
CLK3-206ENST00000562078 MAPKAPK2P49137 400 aa12.84□□□□□ -0.35
CLK3-206ENST00000562078 POLR2GP62487 172 aaKnown RBP eCLIP12.84□□□□□ -0.35
CLK3-206ENST00000562078 KEAP1Q14145 624 aa12.84□□□□□ -0.35
CLK3-206ENST00000562078 ZNF235Q14590 738 aa12.84□□□□□ -0.35
CLK3-206ENST00000562078 QPRTQ15274 297 aa12.84□□□□□ -0.35
CLK3-206ENST00000562078 ZNF789Q5FWF6 425 aa12.84□□□□□ -0.35
CLK3-206ENST00000562078 SIRPB2Q5JXA9 342 aa12.84□□□□□ -0.35
CLK3-206ENST00000562078 SLC35F1Q5T1Q4 408 aa12.84□□□□□ -0.35
CLK3-206ENST00000562078 SLC8B1Q6J4K2 584 aa12.84□□□□□ -0.35
CLK3-206ENST00000562078 SCIMPQ6UWF3 145 aa12.84□□□□□ -0.35
CLK3-206ENST00000562078 DLEU7Q6UYE1 221 aa12.84□□□□□ -0.35
CLK3-206ENST00000562078 SLC22A9Q8IVM8 553 aa12.84□□□□□ -0.35
CLK3-206ENST00000562078 TAGAPQ8N103 731 aa12.84□□□□□ -0.35
CLK3-206ENST00000562078 ARRDC2Q8TBH0 407 aa12.84□□□□□ -0.35
CLK3-206ENST00000562078 ZNF675Q8TD23 568 aa12.84□□□□□ -0.35
CLK3-206ENST00000562078 IPCEF1Q8WWN9 437 aaPredicted RBP12.84□□□□□ -0.35
CLK3-206ENST00000562078 FCGR1BQ92637 280 aa12.84□□□□□ -0.35
CLK3-206ENST00000562078 KLHL15Q96M94 604 aa12.84□□□□□ -0.35
CLK3-206ENST00000562078 SEMA3CQ99985 751 aa12.84□□□□□ -0.35
CLK3-206ENST00000562078 TRMOQ9BU70 441 aa12.84□□□□□ -0.35
CLK3-206ENST00000562078 MRPS7Q9Y2R9 242 aaKnown RBP12.84□□□□□ -0.35
CLK3-206ENST00000562078 DENND4CQ5VZ89 1909 aa12.83□□□□□ -0.36
CLK3-206ENST00000562078 A0A0D9SEW6 157 aa12.83□□□□□ -0.36
CLK3-206ENST00000562078 MUSKO15146 869 aa12.83□□□□□ -0.36
CLK3-206ENST00000562078 DFNA5O60443 496 aa12.83□□□□□ -0.36
CLK3-206ENST00000562078 EFEMP2O95967 443 aa12.83□□□□□ -0.36
CLK3-206ENST00000562078 URODP06132 367 aa12.83□□□□□ -0.36
CLK3-206ENST00000562078 PROS1P07225 676 aa12.83□□□□□ -0.36
CLK3-206ENST00000562078 LTA4HP09960 611 aaKnown RBP12.83□□□□□ -0.36
CLK3-206ENST00000562078 ATP5C1P36542 298 aaKnown RBP12.83□□□□□ -0.36
CLK3-206ENST00000562078 TGM4P49221 684 aa12.83□□□□□ -0.36
CLK3-206ENST00000562078 RGS6P49758 472 aa12.83□□□□□ -0.36
CLK3-206ENST00000562078 TMEM240Q5SV17 173 aa12.83□□□□□ -0.36
CLK3-206ENST00000562078 TMPRSS11AQ6ZMR5 421 aa12.83□□□□□ -0.36
CLK3-206ENST00000562078 CEP68Q76N32 757 aa12.83□□□□□ -0.36
CLK3-206ENST00000562078 GPAT4Q86UL3 456 aa12.83□□□□□ -0.36
CLK3-206ENST00000562078 TTC29Q8NA56 475 aaPredicted RBP12.83□□□□□ -0.36
CLK3-206ENST00000562078 ENOPH1Q9UHY7 261 aa12.83□□□□□ -0.36
CLK3-206ENST00000562078 ACTL7AQ9Y615 435 aa12.83□□□□□ -0.36
CLK3-206ENST00000562078 CARNS1A5YM72 827 aa12.83□□□□□ -0.36
CLK3-206ENST00000562078 ZNF98A6NK75 572 aa12.83□□□□□ -0.36
CLK3-206ENST00000562078 WASHC1A8K0Z3 465 aa12.83□□□□□ -0.36
CLK3-206ENST00000562078 SCAMP3O14828 347 aaKnown RBP12.83□□□□□ -0.36
CLK3-206ENST00000562078 PRAMEF11O60813 436 aa12.83□□□□□ -0.36
CLK3-206ENST00000562078 ITGALP20701 1170 aa12.83□□□□□ -0.36
CLK3-206ENST00000562078 PPM1AP35813 382 aa12.83□□□□□ -0.36
CLK3-206ENST00000562078 CCT3P49368 545 aaKnown RBP12.83□□□□□ -0.36
CLK3-206ENST00000562078 YBEYP58557 167 aaPredicted RBP12.83□□□□□ -0.36
CLK3-206ENST00000562078 LEXMQ3ZCV2 418 aa12.83□□□□□ -0.36
CLK3-206ENST00000562078 HIPK1Q86Z02 1210 aa12.83□□□□□ -0.36
CLK3-206ENST00000562078 OR2T12Q8NG77 320 aa12.83□□□□□ -0.36
CLK3-206ENST00000562078 OR52K2Q8NGK3 314 aa12.83□□□□□ -0.36
CLK3-206ENST00000562078 TSPEARQ8WU66 669 aa12.83□□□□□ -0.36
CLK3-206ENST00000562078 FAM162AQ96A26 154 aa12.83□□□□□ -0.36
CLK3-206ENST00000562078 SIPA1Q96FS4 1042 aa12.83□□□□□ -0.36
CLK3-206ENST00000562078 C1QTNF6Q9BXI9 259 aa12.83□□□□□ -0.36
CLK3-206ENST00000562078 POLR1EQ9GZS1 481 aaKnown RBP12.83□□□□□ -0.36
CLK3-206ENST00000562078 IFT46Q9NQC8 304 aa12.83□□□□□ -0.36
CLK3-206ENST00000562078 AIG1Q9NVV5 245 aa12.83□□□□□ -0.36
CLK3-206ENST00000562078 NDRG4Q9ULP0 352 aaKnown RBP12.83□□□□□ -0.36
CLK3-206ENST00000562078 BACE2Q9Y5Z0 518 aa12.83□□□□□ -0.36
CLK3-206ENST00000562078 EFCAB10A6NFE3 127 aa12.82□□□□□ -0.36
CLK3-206ENST00000562078 COCHO43405 550 aa12.82□□□□□ -0.36
CLK3-206ENST00000562078 MRPS14O60783 128 aaKnown RBP12.82□□□□□ -0.36
CLK3-206ENST00000562078 SEC22BO75396 215 aa12.82□□□□□ -0.36
CLK3-206ENST00000562078 PTHP01270 115 aa12.82□□□□□ -0.36
CLK3-206ENST00000562078 CSF3P09919 207 aa12.82□□□□□ -0.36
CLK3-206ENST00000562078 HOXB3P14651 431 aaPredicted RBP12.82□□□□□ -0.36
CLK3-206ENST00000562078 CPN2P22792 545 aa12.82□□□□□ -0.36
CLK3-206ENST00000562078 RPS24P62847 133 aaKnown RBP12.82□□□□□ -0.36
CLK3-206ENST00000562078 HERVK_113P63132 956 aa12.82□□□□□ -0.36
CLK3-206ENST00000562078 TBCEQ15813 527 aaPredicted RBP12.82□□□□□ -0.36
CLK3-206ENST00000562078 HKDC1Q2TB90 917 aa12.82□□□□□ -0.36
CLK3-206ENST00000562078 FBXO48Q5FWF7 155 aa12.82□□□□□ -0.36
CLK3-206ENST00000562078 TOR1AIP1Q5JTV8 583 aa12.82□□□□□ -0.36
CLK3-206ENST00000562078 KANK2Q63ZY3 851 aa12.82□□□□□ -0.36
CLK3-206ENST00000562078 SAXO2Q658L1 398 aa12.82□□□□□ -0.36
CLK3-206ENST00000562078 CCDC149Q6ZUS6 474 aa12.82□□□□□ -0.36
CLK3-206ENST00000562078 DENND1CQ8IV53 801 aa12.82□□□□□ -0.36
CLK3-206ENST00000562078 OR10A6Q8NH74 314 aa12.82□□□□□ -0.36
CLK3-206ENST00000562078 CLHC1Q8NHS4 586 aa12.82□□□□□ -0.36
CLK3-206ENST00000562078 ENKURQ8TC29 256 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms