RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 MGAT5Q09328 741 aa9.64□□□□□ -0.87
LDLR-214ENST00000560628 ABRAXAS2Q15018 415 aa9.64□□□□□ -0.87
LDLR-214ENST00000560628 NSDHLQ15738 373 aa9.64□□□□□ -0.87
LDLR-214ENST00000560628 C18orf21Q32NC0 220 aaPredicted RBP9.64□□□□□ -0.87
LDLR-214ENST00000560628 DEFB134Q4QY38 66 aa9.64□□□□□ -0.87
LDLR-214ENST00000560628 SFT2D3Q587I9 215 aa9.64□□□□□ -0.87
LDLR-214ENST00000560628 ZNF787Q6DD87 383 aa9.64□□□□□ -0.87
LDLR-214ENST00000560628 CAPN12Q6ZSI9 719 aa9.64□□□□□ -0.87
LDLR-214ENST00000560628 CTAGE6Q86UF2 777 aa9.64□□□□□ -0.87
LDLR-214ENST00000560628 THOC6Q86W42 341 aaKnown RBP9.64□□□□□ -0.87
LDLR-214ENST00000560628 ZC3HC1Q86WB0 502 aaKnown RBP9.64□□□□□ -0.87
LDLR-214ENST00000560628 FBXO36Q8NEA4 188 aa9.64□□□□□ -0.87
LDLR-214ENST00000560628 SLC5A11Q8WWX8 675 aa9.64□□□□□ -0.87
LDLR-214ENST00000560628 ATL1Q8WXF7 558 aa9.64□□□□□ -0.87
LDLR-214ENST00000560628 LRRC39Q96DD0 335 aa9.64□□□□□ -0.87
LDLR-214ENST00000560628 PDLIM5Q96HC4 596 aaKnown RBP9.64□□□□□ -0.87
LDLR-214ENST00000560628 RUNDC3BQ96NL0 473 aa9.64□□□□□ -0.87
LDLR-214ENST00000560628 KRT12Q99456 494 aa9.64□□□□□ -0.87
LDLR-214ENST00000560628 NAPGQ99747 312 aaPredicted RBP9.64□□□□□ -0.87
LDLR-214ENST00000560628 SPNS1Q9H2V7 528 aa9.64□□□□□ -0.87
LDLR-214ENST00000560628 KCNK13Q9HB14 408 aa9.64□□□□□ -0.87
LDLR-214ENST00000560628 ZFATQ9P243 1243 aa9.64□□□□□ -0.87
LDLR-214ENST00000560628 C19orf25Q9UFG5 118 aaPredicted RBP9.64□□□□□ -0.87
LDLR-214ENST00000560628 CORO1CQ9ULV4 474 aaPredicted RBP9.64□□□□□ -0.87
LDLR-214ENST00000560628 PYCARDQ9ULZ3 195 aa9.64□□□□□ -0.87
LDLR-214ENST00000560628 SLC22A7Q9Y694 548 aa9.64□□□□□ -0.87
LDLR-214ENST00000560628 SVILO95425 2214 aa9.64□□□□□ -0.87
LDLR-214ENST00000560628 FAM95CA0A1B0GW59 222 aa9.63□□□□□ -0.87
LDLR-214ENST00000560628 OR5H15A6NDH6 313 aa9.63□□□□□ -0.87
LDLR-214ENST00000560628 GALR3O60755 368 aaPredicted RBP9.63□□□□□ -0.87
LDLR-214ENST00000560628 B4GALT2O60909 372 aa9.63□□□□□ -0.87
LDLR-214ENST00000560628 WISP2O76076 250 aa9.63□□□□□ -0.87
LDLR-214ENST00000560628 ENO2P09104 434 aaPredicted RBP9.63□□□□□ -0.87
LDLR-214ENST00000560628 ZNF888P0CJ79 500 aaPredicted RBP9.63□□□□□ -0.87
LDLR-214ENST00000560628 ALOX12P18054 663 aa9.63□□□□□ -0.87
LDLR-214ENST00000560628 SCTRP47872 440 aa9.63□□□□□ -0.87
LDLR-214ENST00000560628 AGTR2P50052 363 aa9.63□□□□□ -0.87
LDLR-214ENST00000560628 RAB8AP61006 207 aa9.63□□□□□ -0.87
LDLR-214ENST00000560628 AP2B1P63010 937 aa9.63□□□□□ -0.87
LDLR-214ENST00000560628 RHAGQ02094 409 aa9.63□□□□□ -0.87
LDLR-214ENST00000560628 PWP1Q13610 501 aa9.63□□□□□ -0.87
LDLR-214ENST00000560628 HERC3Q15034 1050 aa9.63□□□□□ -0.87
LDLR-214ENST00000560628 RBBP5Q15291 538 aaKnown RBP9.63□□□□□ -0.87
LDLR-214ENST00000560628 ZNF324BQ6AW86 544 aaPredicted RBP9.63□□□□□ -0.87
LDLR-214ENST00000560628 PLAG1Q6DJT9 500 aa9.63□□□□□ -0.87
LDLR-214ENST00000560628 PAPD4Q6PIY7 484 aaKnown RBP9.63□□□□□ -0.87
LDLR-214ENST00000560628 NXPE4Q6UWF7 544 aa9.63□□□□□ -0.87
LDLR-214ENST00000560628 SBSNQ6UWP8 590 aa9.63□□□□□ -0.87
LDLR-214ENST00000560628 CYP4X1Q8N118 509 aa9.63□□□□□ -0.87
LDLR-214ENST00000560628 BEST3Q8N1M1 668 aa9.63□□□□□ -0.87
LDLR-214ENST00000560628 AFAP1L2Q8N4X5 818 aa9.63□□□□□ -0.87
LDLR-214ENST00000560628 TBC1D19Q8N5T2 526 aa9.63□□□□□ -0.87
LDLR-214ENST00000560628 PLPP5Q8NEB5 264 aa9.63□□□□□ -0.87
LDLR-214ENST00000560628 SUN3Q8TAQ9 357 aa9.63□□□□□ -0.87
LDLR-214ENST00000560628 ANKRD49Q8WVL7 239 aa9.63□□□□□ -0.87
LDLR-214ENST00000560628 TSLPQ969D9 159 aa9.63□□□□□ -0.87
LDLR-214ENST00000560628 EGFL8Q99944 293 aa9.63□□□□□ -0.87
LDLR-214ENST00000560628 SLX1AQ9BQ83 275 aa9.63□□□□□ -0.87
LDLR-214ENST00000560628 FAM129AQ9BZQ8 928 aa9.63□□□□□ -0.87
LDLR-214ENST00000560628 UNKQ9C0B0 810 aaKnown RBP9.63□□□□□ -0.87
LDLR-214ENST00000560628 KLHL31Q9H511 634 aa9.63□□□□□ -0.87
LDLR-214ENST00000560628 LANCL2Q9NS86 450 aa9.63□□□□□ -0.87
LDLR-214ENST00000560628 ANKRD10Q9NXR5 420 aa9.63□□□□□ -0.87
LDLR-214ENST00000560628 MOCS1Q9NZB8 636 aa9.63□□□□□ -0.87
LDLR-214ENST00000560628 TEKT2Q9UIF3 430 aa9.63□□□□□ -0.87
LDLR-214ENST00000560628 SLC22A14Q9Y267 594 aa9.63□□□□□ -0.87
LDLR-214ENST00000560628 DYRK1BQ9Y463 629 aa9.63□□□□□ -0.87
LDLR-214ENST00000560628 POLEQ07864 2286 aa9.63□□□□□ -0.87
LDLR-214ENST00000560628 PRRC2CQ9Y520 2896 aaKnown RBP9.63□□□□□ -0.87
LDLR-214ENST00000560628 ZGRF1Q86YA3 2104 aa9.62□□□□□ -0.87
LDLR-214ENST00000560628 FAM227AF5H4B4 570 aa9.62□□□□□ -0.87
LDLR-214ENST00000560628 CCDC188H7C350 402 aa9.62□□□□□ -0.87
LDLR-214ENST00000560628 MAN1A2O60476 641 aa9.62□□□□□ -0.87
LDLR-214ENST00000560628 PRAMEF2O60811 474 aa9.62□□□□□ -0.87
LDLR-214ENST00000560628 ZG16O60844 167 aa9.62□□□□□ -0.87
LDLR-214ENST00000560628 RASAL1O95294 804 aa9.62□□□□□ -0.87
LDLR-214ENST00000560628 FHP07954 510 aa9.62□□□□□ -0.87
LDLR-214ENST00000560628 CYC1P08574 325 aa9.62□□□□□ -0.87
LDLR-214ENST00000560628 ZNF37AP17032 561 aaPredicted RBP9.62□□□□□ -0.87
LDLR-214ENST00000560628 MST1P26927 711 aa9.62□□□□□ -0.87
LDLR-214ENST00000560628 DCTP40126 519 aa9.62□□□□□ -0.87
LDLR-214ENST00000560628 GDF5P43026 501 aa9.62□□□□□ -0.87
LDLR-214ENST00000560628 OR4D2P58180 307 aa9.62□□□□□ -0.87
LDLR-214ENST00000560628 BTG2P78543 158 aa9.62□□□□□ -0.87
LDLR-214ENST00000560628 PMP22Q01453 160 aa9.62□□□□□ -0.87
LDLR-214ENST00000560628 RGS1Q08116 209 aa9.62□□□□□ -0.87
LDLR-214ENST00000560628 FRG1Q14331 258 aaKnown RBP9.62□□□□□ -0.87
LDLR-214ENST00000560628 TSNQ15631 228 aaKnown RBP9.62□□□□□ -0.87
LDLR-214ENST00000560628 PPP1R3AQ16821 1122 aa9.62□□□□□ -0.87
LDLR-214ENST00000560628 ACER2Q5QJU3 275 aa9.62□□□□□ -0.87
LDLR-214ENST00000560628 C1QL3Q5VWW1 255 aa9.62□□□□□ -0.87
LDLR-214ENST00000560628 H3F3CQ6NXT2 135 aa9.62□□□□□ -0.87
LDLR-214ENST00000560628 GFRALQ6UXV0 394 aa9.62□□□□□ -0.87
LDLR-214ENST00000560628 TMPRSS11BQ86T26 416 aa9.62□□□□□ -0.87
LDLR-214ENST00000560628 FJX1Q86VR8 437 aa9.62□□□□□ -0.87
LDLR-214ENST00000560628 CRLF3Q8IUI8 442 aa9.62□□□□□ -0.87
LDLR-214ENST00000560628 CEP97Q8IW35 865 aa9.62□□□□□ -0.87
LDLR-214ENST00000560628 ZBED8Q8IZ13 594 aa9.62□□□□□ -0.87
LDLR-214ENST00000560628 SPATA6LQ8N4H0 392 aa9.62□□□□□ -0.87
LDLR-214ENST00000560628 NKAPQ8N5F7 415 aaKnown RBP9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms