RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 NT5DC2Q9H857 520 aa13.41□□□□□ -0.26
PTCH1-226ENST00000553011 ROPN1Q9HAT0 212 aaPredicted RBP13.41□□□□□ -0.26
PTCH1-226ENST00000553011 ACSS2Q9NR19 701 aa13.41□□□□□ -0.26
PTCH1-226ENST00000553011 DCDC2Q9UHG0 476 aa13.41□□□□□ -0.26
PTCH1-226ENST00000553011 PCTPQ9UKL6 214 aa13.41□□□□□ -0.26
PTCH1-226ENST00000553011 ZNF490Q9ULM2 529 aaPredicted RBP13.41□□□□□ -0.26
PTCH1-226ENST00000553011 CDC14AQ9UNH5 594 aa13.41□□□□□ -0.26
PTCH1-226ENST00000553011 PTRH2Q9Y3E5 179 aaKnown RBP13.41□□□□□ -0.26
PTCH1-226ENST00000553011 PCSK5Q92824 1860 aa13.41□□□□□ -0.26
PTCH1-226ENST00000553011 ATMQ13315 3056 aa13.4□□□□□ -0.26
PTCH1-226ENST00000553011 DLX3O60479 287 aa13.4□□□□□ -0.26
PTCH1-226ENST00000553011 GLRA3O75311 464 aa13.4□□□□□ -0.26
PTCH1-226ENST00000553011 B3GALT4O96024 378 aa13.4□□□□□ -0.26
PTCH1-226ENST00000553011 RPS17P08708 135 aaKnown RBP13.4□□□□□ -0.26
PTCH1-226ENST00000553011 PIM1P11309 404 aaPredicted RBP13.4□□□□□ -0.26
PTCH1-226ENST00000553011 KRT4P19013 534 aa13.4□□□□□ -0.26
PTCH1-226ENST00000553011 TAC1P20366 129 aa13.4□□□□□ -0.26
PTCH1-226ENST00000553011 HNF4AP41235 474 aa13.4□□□□□ -0.26
PTCH1-226ENST00000553011 SLC18A2Q05940 514 aa13.4□□□□□ -0.26
PTCH1-226ENST00000553011 RGS1Q08116 209 aa13.4□□□□□ -0.26
PTCH1-226ENST00000553011 PCDH1Q08174 1060 aa13.4□□□□□ -0.26
PTCH1-226ENST00000553011 ZNF844Q08AG5 666 aa13.4□□□□□ -0.26
PTCH1-226ENST00000553011 DSG2Q14126 1118 aa13.4□□□□□ -0.26
PTCH1-226ENST00000553011 E2F2Q14209 437 aa13.4□□□□□ -0.26
PTCH1-226ENST00000553011 NKG7Q16617 165 aa13.4□□□□□ -0.26
PTCH1-226ENST00000553011 SYT16Q17RD7 645 aa13.4□□□□□ -0.26
PTCH1-226ENST00000553011 CRTC2Q53ET0 693 aaPredicted RBP13.4□□□□□ -0.26
PTCH1-226ENST00000553011 SHISA6Q6ZSJ9 500 aa13.4□□□□□ -0.26
PTCH1-226ENST00000553011 VN1R5Q7Z5H4 357 aa13.4□□□□□ -0.26
PTCH1-226ENST00000553011 TRABD2AQ86V40 505 aa13.4□□□□□ -0.26
PTCH1-226ENST00000553011 PDSS2Q86YH6 399 aa13.4□□□□□ -0.26
PTCH1-226ENST00000553011 SHISA5Q8N114 240 aa13.4□□□□□ -0.26
PTCH1-226ENST00000553011 TRPV3Q8NET8 790 aa13.4□□□□□ -0.26
PTCH1-226ENST00000553011 CCT6BQ92526 530 aa13.4□□□□□ -0.26
PTCH1-226ENST00000553011 ZBTB9Q96C00 473 aa13.4□□□□□ -0.26
PTCH1-226ENST00000553011 TMEM109Q9BVC6 243 aa13.4□□□□□ -0.26
PTCH1-226ENST00000553011 FAM117AQ9C073 453 aa13.4□□□□□ -0.26
PTCH1-226ENST00000553011 SLC6A16Q9GZN6 736 aa13.4□□□□□ -0.26
PTCH1-226ENST00000553011 PITHD1Q9GZP4 211 aaPredicted RBP13.4□□□□□ -0.26
PTCH1-226ENST00000553011 C12orf65Q9H3J6 166 aaKnown RBP13.4□□□□□ -0.26
PTCH1-226ENST00000553011 KLHL31Q9H511 634 aa13.4□□□□□ -0.26
PTCH1-226ENST00000553011 IPPKQ9H8X2 491 aa13.4□□□□□ -0.26
PTCH1-226ENST00000553011 COPG2Q9UBF2 871 aa13.4□□□□□ -0.26
PTCH1-226ENST00000553011 TRPC4Q9UBN4 977 aa13.4□□□□□ -0.26
PTCH1-226ENST00000553011 PADI2Q9Y2J8 665 aa13.4□□□□□ -0.26
PTCH1-226ENST00000553011 CNTRLQ7Z7A1 2325 aa13.4□□□□□ -0.26
PTCH1-226ENST00000553011 ZNF860A6NHJ4 632 aa13.39□□□□□ -0.27
PTCH1-226ENST00000553011 C4orf51C9J302 202 aa13.39□□□□□ -0.27
PTCH1-226ENST00000553011 SGK494L7N484 410 aa13.39□□□□□ -0.27
PTCH1-226ENST00000553011 COPEO14579 308 aa13.39□□□□□ -0.27
PTCH1-226ENST00000553011 OR7A17O14581 309 aa13.39□□□□□ -0.27
PTCH1-226ENST00000553011 KLHL18O94889 574 aa13.39□□□□□ -0.27
PTCH1-226ENST00000553011 NSA2O95478 260 aaKnown RBP13.39□□□□□ -0.27
PTCH1-226ENST00000553011 ALBP02768 609 aa13.39□□□□□ -0.27
PTCH1-226ENST00000553011 SERPINA6P08185 405 aa13.39□□□□□ -0.27
PTCH1-226ENST00000553011 ZNF888P0CJ79 500 aaPredicted RBP13.39□□□□□ -0.27
PTCH1-226ENST00000553011 CRHR1P34998 444 aa13.39□□□□□ -0.27
PTCH1-226ENST00000553011 FOLR3P41439 243 aa13.39□□□□□ -0.27
PTCH1-226ENST00000553011 AVPR1BP47901 424 aa13.39□□□□□ -0.27
PTCH1-226ENST00000553011 PIK3CGP48736 1102 aa13.39□□□□□ -0.27
PTCH1-226ENST00000553011 MAT1AQ00266 395 aaKnown RBP13.39□□□□□ -0.27
PTCH1-226ENST00000553011 LAPTM5Q13571 262 aa13.39□□□□□ -0.27
PTCH1-226ENST00000553011 HIST2H2ACQ16777 129 aaPredicted RBP13.39□□□□□ -0.27
PTCH1-226ENST00000553011 UGT8Q16880 541 aa13.39□□□□□ -0.27
PTCH1-226ENST00000553011 DEFB109BQ30KR1 87 aa13.39□□□□□ -0.27
PTCH1-226ENST00000553011 KRT71Q3SY84 523 aa13.39□□□□□ -0.27
PTCH1-226ENST00000553011 PAGE2BQ5JRK9 111 aa13.39□□□□□ -0.27
PTCH1-226ENST00000553011 TOR1AIP1Q5JTV8 583 aa13.39□□□□□ -0.27
PTCH1-226ENST00000553011 HIST2H2AA3Q6FI13 130 aa13.39□□□□□ -0.27
PTCH1-226ENST00000553011 METTL2BQ6P1Q9 378 aaKnown RBP13.39□□□□□ -0.27
PTCH1-226ENST00000553011 MYLK4Q86YV6 388 aaPredicted RBP13.39□□□□□ -0.27
PTCH1-226ENST00000553011 SRRM1Q8IYB3 904 aaKnown RBP13.39□□□□□ -0.27
PTCH1-226ENST00000553011 PRSS58Q8IYP2 241 aa13.39□□□□□ -0.27
PTCH1-226ENST00000553011 IQCKQ8N0W5 287 aa13.39□□□□□ -0.27
PTCH1-226ENST00000553011 AFAP1L2Q8N4X5 818 aa13.39□□□□□ -0.27
PTCH1-226ENST00000553011 TTLQ8NG68 377 aa13.39□□□□□ -0.27
PTCH1-226ENST00000553011 OR52B6Q8NGF0 335 aa13.39□□□□□ -0.27
PTCH1-226ENST00000553011 OR2Y1Q8NGV0 311 aa13.39□□□□□ -0.27
PTCH1-226ENST00000553011 STT3BQ8TCJ2 826 aa13.39□□□□□ -0.27
PTCH1-226ENST00000553011 ADAMTS17Q8TE56 1095 aa13.39□□□□□ -0.27
PTCH1-226ENST00000553011 EXTL1Q92935 676 aa13.39□□□□□ -0.27
PTCH1-226ENST00000553011 SPSB2Q99619 263 aa13.39□□□□□ -0.27
PTCH1-226ENST00000553011 YIPF2Q9BWQ6 316 aa13.39□□□□□ -0.27
PTCH1-226ENST00000553011 SLC26A1Q9H2B4 701 aa13.39□□□□□ -0.27
PTCH1-226ENST00000553011 SOX17Q9H6I2 414 aaPredicted RBP13.39□□□□□ -0.27
PTCH1-226ENST00000553011 NOL11Q9H8H0 719 aaKnown RBP13.39□□□□□ -0.27
PTCH1-226ENST00000553011 WDR54Q9H977 334 aa13.39□□□□□ -0.27
PTCH1-226ENST00000553011 ACTR8Q9H981 624 aa13.39□□□□□ -0.27
PTCH1-226ENST00000553011 ANKHQ9HCJ1 492 aa13.39□□□□□ -0.27
PTCH1-226ENST00000553011 ZBTB26Q9HCK0 441 aa13.39□□□□□ -0.27
PTCH1-226ENST00000553011 RALYQ9UKM9 306 aaKnown RBP13.39□□□□□ -0.27
PTCH1-226ENST00000553011 NAALAD2Q9Y3Q0 740 aa13.39□□□□□ -0.27
PTCH1-226ENST00000553011 SLC22A7Q9Y694 548 aa13.39□□□□□ -0.27
PTCH1-226ENST00000553011 CCDC151A5D8V7 595 aa13.38□□□□□ -0.27
PTCH1-226ENST00000553011 ANKDD1BA6NHY2 528 aa13.38□□□□□ -0.27
PTCH1-226ENST00000553011 VSTM2BA6NLU5 285 aa13.38□□□□□ -0.27
PTCH1-226ENST00000553011 PRPF4O43172 522 aaKnown RBP eCLIP13.38□□□□□ -0.27
PTCH1-226ENST00000553011 PLIN3O60664 434 aa13.38□□□□□ -0.27
PTCH1-226ENST00000553011 RDH16O75452 317 aa13.38□□□□□ -0.27
PTCH1-226ENST00000553011 ERLIN1O75477 346 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms