RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 CYP4Z1Q86W10 505 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 ZNF547Q8IVP9 402 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 SFTPA2Q8IWL1 248 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 ADHFE1Q8IWW8 467 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 OR4N5Q8IXE1 308 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 CLIP4Q8N3C7 705 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 USP7Q93009 1102 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 DTD2Q96FN9 168 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 PYURFQ96I23 114 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 LMLNQ96KR4 655 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 FAM129BQ96TA1 746 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 SH3GL1Q99961 368 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 C17orf62Q9BQA9 187 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 SLC35A5Q9BS91 424 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 CCDC177Q9NQR7 707 aaPredicted RBP5.38□□□□□ -1.55
LIMA1-215ENST00000552823 WBP1LQ9NX94 342 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 ERVK-18Q9QC07 812 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 DOLKQ9UPQ8 538 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 TCF20Q9UGU0 1960 aaKnown RBP5.38□□□□□ -1.55
LIMA1-215ENST00000552823 LINC00854A0A1B0GVQ3 168 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 A0A1W2PS29 197 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 PIPSLA2A3N6 862 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 ZSCAN9O15535 394 aaPredicted RBP5.37□□□□□ -1.55
LIMA1-215ENST00000552823 FRS3O43559 492 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 NFATC1O95644 943 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 LINC00271P0C7V0 271 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 PRPS2P11908 318 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 MATN1P21941 496 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 IGFBP4P22692 258 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 KDELR2P33947 212 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 FEN1P39748 380 aaKnown RBP5.37□□□□□ -1.55
LIMA1-215ENST00000552823 P2RY2P41231 377 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 SLC6A12P48065 614 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 TXNL4AP83876 142 aaKnown RBP5.37□□□□□ -1.55
LIMA1-215ENST00000552823 MAPK11Q15759 364 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 CARTPTQ16568 116 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 DUOXA1Q1HG43 343 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 PRSS53Q2L4Q9 553 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 VMACQ2NL98 169 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 WSCD2Q2TBF2 565 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 CTU2Q2VPK5 515 aaKnown RBP5.37□□□□□ -1.55
LIMA1-215ENST00000552823 HNRNPA1L2Q32P51 320 aaKnown RBP5.37□□□□□ -1.55
LIMA1-215ENST00000552823 SLC36A3Q495N2 470 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 PRAMEF13Q5VWM6 474 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 DEF8Q6ZN54 512 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 TRIM46Q7Z4K8 759 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 TECPR1Q7Z6L1 1165 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 TRIM73Q86UV7 250 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 C17orf64Q86WR6 236 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 TAGAPQ8N103 731 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 SHISA5Q8N114 240 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 TERB1Q8NA31 727 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 PIK3C3Q8NEB9 887 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 OR4E2Q8NGC2 313 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 OR9Q2Q8NGE9 314 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 OR9A1PQ8NGU1 263 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 ZCCHC10Q8TBK6 192 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 FGF14Q92915 247 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 SMARCD2Q92925 531 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 GLMNQ92990 594 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 TSACCQ96A04 125 aaPredicted RBP5.37□□□□□ -1.55
LIMA1-215ENST00000552823 CPPED1Q9BRF8 314 aaPredicted RBP5.37□□□□□ -1.55
LIMA1-215ENST00000552823 SLC2A11Q9BYW1 496 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 KCNH6Q9H252 994 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 ZNF696Q9H7X3 374 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 REEP1Q9H902 201 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 FAM118AQ9NWS6 357 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 DNAJB9Q9UBS3 223 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 RUVBL1Q9Y265 456 aaKnown RBP5.37□□□□□ -1.55
LIMA1-215ENST00000552823 WDR37Q9Y2I8 494 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 YBX2Q9Y2T7 364 aaKnown RBP5.37□□□□□ -1.55
LIMA1-215ENST00000552823 GPR179Q6PRD1 2367 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 LOC100506127A0A0U1RQW1 187 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 LOC100130705A0A1B0GUX0 176 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 C5orf58C9J3I9 102 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 H3BQ06 376 aaPredicted RBP5.37□□□□□ -1.55
LIMA1-215ENST00000552823 GFYI3L273 518 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 UPK1AO00322 258 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 ARNTLO00327 626 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 BCKDKO14874 412 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 SUV39H1O43463 412 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 FAM20BO75063 409 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 EFCAB14O75071 495 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 ERN1O75460 977 aaKnown RBP5.37□□□□□ -1.55
LIMA1-215ENST00000552823 SCELO95171 688 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 IGFBP1P08833 259 aaPredicted RBP5.37□□□□□ -1.55
LIMA1-215ENST00000552823 CISD3P0C7P0 127 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 SLC35G4P0C7Q5 338 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 ZNF30P17039 623 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 PRPS1L1P21108 318 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 PXNP49023 591 aaPredicted RBP5.37□□□□□ -1.55
LIMA1-215ENST00000552823 ALDH3A2P51648 485 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 AP1S2P56377 157 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 OLR1P78380 273 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 PHEXP78562 749 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 HOXC5Q00444 222 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 CREMQ03060 361 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 DLX2Q07687 328 aaPredicted RBP5.37□□□□□ -1.55
LIMA1-215ENST00000552823 DMC1Q14565 340 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 SKIV2LQ15477 1246 aaKnown RBP5.37□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms