RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 EHD1Q9H4M9 534 aa17.81■□□□□ 0.44
PRPF40B-208ENST00000548436 REEP4Q9H6H4 257 aa17.81■□□□□ 0.44
PRPF40B-208ENST00000548436 DYRK4Q9NR20 520 aa17.81■□□□□ 0.44
PRPF40B-208ENST00000548436 SIRT5Q9NXA8 310 aa17.81■□□□□ 0.44
PRPF40B-208ENST00000548436 PLAGL1Q9UM63 463 aa17.81■□□□□ 0.44
PRPF40B-208ENST00000548436 VPS4AQ9UN37 437 aa17.81■□□□□ 0.44
PRPF40B-208ENST00000548436 BCKDKO14874 412 aa17.8■□□□□ 0.44
PRPF40B-208ENST00000548436 RB1P06400 928 aa17.8■□□□□ 0.44
PRPF40B-208ENST00000548436 ITGAMP11215 1152 aa17.8■□□□□ 0.44
PRPF40B-208ENST00000548436 P2RY2P41231 377 aa17.8■□□□□ 0.44
PRPF40B-208ENST00000548436 CCR3P51677 355 aa17.8■□□□□ 0.44
PRPF40B-208ENST00000548436 HBA1P69905 142 aa17.8■□□□□ 0.44
PRPF40B-208ENST00000548436 RAPSNQ13702 412 aa17.8■□□□□ 0.44
PRPF40B-208ENST00000548436 IQCCQ4KMZ1 466 aa17.8■□□□□ 0.44
PRPF40B-208ENST00000548436 PAGE2BQ5JRK9 111 aa17.8■□□□□ 0.44
PRPF40B-208ENST00000548436 KDM4DQ6B0I6 523 aa17.8■□□□□ 0.44
PRPF40B-208ENST00000548436 ZNF852Q6ZMS4 543 aa17.8■□□□□ 0.44
PRPF40B-208ENST00000548436 EP400NLQ6ZTU2 488 aa17.8■□□□□ 0.44
PRPF40B-208ENST00000548436 C2orf73Q8N5S3 287 aaPredicted RBP17.8■□□□□ 0.44
PRPF40B-208ENST00000548436 PIK3C3Q8NEB9 887 aa17.8■□□□□ 0.44
PRPF40B-208ENST00000548436 FGF13Q92913 245 aa17.8■□□□□ 0.44
PRPF40B-208ENST00000548436 SMARCD2Q92925 531 aa17.8■□□□□ 0.44
PRPF40B-208ENST00000548436 TPD52L3Q96J77 140 aa17.8■□□□□ 0.44
PRPF40B-208ENST00000548436 SPATA9Q9BWV2 254 aa17.8■□□□□ 0.44
PRPF40B-208ENST00000548436 BHLHE41Q9C0J9 482 aaPredicted RBP17.8■□□□□ 0.44
PRPF40B-208ENST00000548436 CCDC177Q9NQR7 707 aaPredicted RBP17.8■□□□□ 0.44
PRPF40B-208ENST00000548436 GPATCH2Q9NW75 528 aa17.8■□□□□ 0.44
PRPF40B-208ENST00000548436 CDH7Q9ULB5 785 aa17.8■□□□□ 0.44
PRPF40B-208ENST00000548436 TMEM229AB2RXF0 380 aa17.79■□□□□ 0.44
PRPF40B-208ENST00000548436 VEGFDO43915 354 aa17.79■□□□□ 0.44
PRPF40B-208ENST00000548436 GCM2O75603 506 aaPredicted RBP17.79■□□□□ 0.44
PRPF40B-208ENST00000548436 SEC14L2O76054 403 aa17.79■□□□□ 0.44
PRPF40B-208ENST00000548436 AQP1P29972 269 aa17.79■□□□□ 0.44
PRPF40B-208ENST00000548436 DNAJA1P31689 397 aaKnown RBP17.79■□□□□ 0.44
PRPF40B-208ENST00000548436 RYKP34925 604 aa17.79■□□□□ 0.44
PRPF40B-208ENST00000548436 IL12RB1P42701 662 aa17.79■□□□□ 0.44
PRPF40B-208ENST00000548436 CASP9P55211 416 aa17.79■□□□□ 0.44
PRPF40B-208ENST00000548436 GRSF1Q12849 480 aaKnown RBP eCLIP17.79■□□□□ 0.44
PRPF40B-208ENST00000548436 HIST2H2ACQ16777 129 aaPredicted RBP17.79■□□□□ 0.44
PRPF40B-208ENST00000548436 HIST2H2AA3Q6FI13 130 aa17.79■□□□□ 0.44
PRPF40B-208ENST00000548436 TERB1Q8NA31 727 aa17.79■□□□□ 0.44
PRPF40B-208ENST00000548436 OR5AR1Q8NGP9 310 aa17.79■□□□□ 0.44
PRPF40B-208ENST00000548436 CIDECQ96AQ7 238 aaPredicted RBP17.79■□□□□ 0.44
PRPF40B-208ENST00000548436 CXorf40BQ96DE9 158 aa17.79■□□□□ 0.44
PRPF40B-208ENST00000548436 CNDP2Q96KP4 475 aaKnown RBP17.79■□□□□ 0.44
PRPF40B-208ENST00000548436 NRTNQ99748 197 aa17.79■□□□□ 0.44
PRPF40B-208ENST00000548436 LHPPQ9H008 270 aa17.79■□□□□ 0.44
PRPF40B-208ENST00000548436 ZNF282Q9UDV7 671 aaPredicted RBP17.79■□□□□ 0.44
PRPF40B-208ENST00000548436 GRXCR1A8MXD5 290 aa17.79■□□□□ 0.44
PRPF40B-208ENST00000548436 SLC1A7O00341 560 aa17.79■□□□□ 0.44
PRPF40B-208ENST00000548436 FURINP09958 794 aa17.79■□□□□ 0.44
PRPF40B-208ENST00000548436 FPR1P21462 350 aa17.79■□□□□ 0.44
PRPF40B-208ENST00000548436 PPIBP23284 216 aaKnown RBP17.79■□□□□ 0.44
PRPF40B-208ENST00000548436 GSTM2P28161 218 aa17.79■□□□□ 0.44
PRPF40B-208ENST00000548436 MVDP53602 400 aa17.79■□□□□ 0.44
PRPF40B-208ENST00000548436 NUP107P57740 925 aa17.79■□□□□ 0.44
PRPF40B-208ENST00000548436 GABARAPL2P60520 117 aa17.79■□□□□ 0.44
PRPF40B-208ENST00000548436 KCNJ10P78508 379 aa17.79■□□□□ 0.44
PRPF40B-208ENST00000548436 MPEG1Q2M385 716 aa17.79■□□□□ 0.44
PRPF40B-208ENST00000548436 COX20Q5RI15 118 aa17.79■□□□□ 0.44
PRPF40B-208ENST00000548436 DHRS4L2Q6PKH6 230 aa17.79■□□□□ 0.44
PRPF40B-208ENST00000548436 HORMAD1Q86X24 394 aa17.79■□□□□ 0.44
PRPF40B-208ENST00000548436 CXorf40AQ8TE69 158 aa17.79■□□□□ 0.44
PRPF40B-208ENST00000548436 C16orf78Q8WTQ4 265 aa17.79■□□□□ 0.44
PRPF40B-208ENST00000548436 FBLIM1Q8WUP2 373 aa17.79■□□□□ 0.44
PRPF40B-208ENST00000548436 C7orf34Q96L11 122 aa17.79■□□□□ 0.44
PRPF40B-208ENST00000548436 PAK1IP1Q9NWT1 392 aaPredicted RBP17.79■□□□□ 0.44
PRPF40B-208ENST00000548436 SLC23A2Q9UGH3 650 aa17.79■□□□□ 0.44
PRPF40B-208ENST00000548436 HCN2Q9UL51 889 aa17.79■□□□□ 0.44
PRPF40B-208ENST00000548436 FAF1Q9UNN5 650 aaPredicted RBP17.79■□□□□ 0.44
PRPF40B-208ENST00000548436 CORO2BQ9UQ03 480 aa17.79■□□□□ 0.44
PRPF40B-208ENST00000548436 ASF1AQ9Y294 204 aa17.79■□□□□ 0.44
PRPF40B-208ENST00000548436 TRANK1O15050 2925 aa17.79■□□□□ 0.44
PRPF40B-208ENST00000548436 TBC1D3BA6NDS4 549 aa17.78■□□□□ 0.44
PRPF40B-208ENST00000548436 TRIM64BA6NI03 449 aa17.78■□□□□ 0.44
PRPF40B-208ENST00000548436 C6orf47O95873 294 aa17.78■□□□□ 0.44
PRPF40B-208ENST00000548436 CYP4B1P13584 511 aa17.78■□□□□ 0.44
PRPF40B-208ENST00000548436 PCGF2P35227 344 aa17.78■□□□□ 0.44
PRPF40B-208ENST00000548436 STT3AP46977 705 aa17.78■□□□□ 0.44
PRPF40B-208ENST00000548436 CLK3P49761 638 aaKnown RBP17.78■□□□□ 0.44
PRPF40B-208ENST00000548436 ARHGDIAP52565 204 aa17.78■□□□□ 0.44
PRPF40B-208ENST00000548436 HPCAP84074 193 aa17.78■□□□□ 0.44
PRPF40B-208ENST00000548436 IL1RL1Q01638 556 aa17.78■□□□□ 0.44
PRPF40B-208ENST00000548436 CNTN1Q12860 1018 aa17.78■□□□□ 0.44
PRPF40B-208ENST00000548436 CDK5R2Q13319 367 aa17.78■□□□□ 0.44
PRPF40B-208ENST00000548436 IL18R1Q13478 541 aa17.78■□□□□ 0.44
PRPF40B-208ENST00000548436 SIM2Q14190 667 aaPredicted RBP17.78■□□□□ 0.44
PRPF40B-208ENST00000548436 PRSS53Q2L4Q9 553 aa17.78■□□□□ 0.44
PRPF40B-208ENST00000548436 C10orf62Q5T681 223 aaPredicted RBP17.78■□□□□ 0.44
PRPF40B-208ENST00000548436 PIWIL3Q7Z3Z3 882 aaKnown RBP17.78■□□□□ 0.44
PRPF40B-208ENST00000548436 VN1R5Q7Z5H4 357 aa17.78■□□□□ 0.44
PRPF40B-208ENST00000548436 GOT1L1Q8NHS2 421 aaPredicted RBP17.78■□□□□ 0.44
PRPF40B-208ENST00000548436 CNIH3Q8TBE1 160 aa17.78■□□□□ 0.44
PRPF40B-208ENST00000548436 DTNBP1Q96EV8 351 aa17.78■□□□□ 0.44
PRPF40B-208ENST00000548436 COX14Q96I36 57 aa17.78■□□□□ 0.44
PRPF40B-208ENST00000548436 TMEM106CQ9BVX2 250 aa17.78■□□□□ 0.44
PRPF40B-208ENST00000548436 ASPSCR1Q9BZE9 553 aa17.78■□□□□ 0.44
PRPF40B-208ENST00000548436 RIBC2Q9H4K1 309 aa17.78■□□□□ 0.44
PRPF40B-208ENST00000548436 PDP1Q9P0J1 537 aaPredicted RBP17.78■□□□□ 0.44
PRPF40B-208ENST00000548436 RAPGEFL1Q9UHV5 662 aa17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms