RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 C12orf4Q9NQ89 552 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 SLC38A7Q9NVC3 462 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 CLN6Q9NWW5 311 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 TMEM9Q9P0T7 183 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 FNIP2Q9P278 1114 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 ERVK-11Q9UQG0 969 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 SF3B6Q9Y3B4 125 aaKnown RBP5.31□□□□□ -1.56
LIMA1-203ENST00000547825 CPQQ9Y646 472 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 NOTCH4Q99466 2003 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 PRSS51A0A1B0GVH4 220 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 A0A1W2PP18 115 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 TNFRSF11BO00300 401 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 DVL2O14641 736 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 PER2O15055 1255 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 COQ9O75208 318 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 UGT2B11O75310 529 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 TBX18O95935 607 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 C1RP00736 705 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 FCER2P06734 321 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 ZNF7P17097 686 aaPredicted RBP5.3□□□□□ -1.56
LIMA1-203ENST00000547825 IGFBP6P24592 240 aaPredicted RBP5.3□□□□□ -1.56
LIMA1-203ENST00000547825 MAGEA3P43357 314 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 ZNF135P52742 658 aaPredicted RBP5.3□□□□□ -1.56
LIMA1-203ENST00000547825 TMBIM6P55061 237 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 RPL26P61254 145 aaKnown RBP5.3□□□□□ -1.56
LIMA1-203ENST00000547825 BEX3Q00994 111 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 SLC10A7Q0GE19 358 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 TSTD2Q5T7W7 516 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 ARMC12Q5T9G4 340 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 FAM91A1Q658Y4 838 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 MZT2BQ6NZ67 158 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 CYP20A1Q6UW02 462 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 SEZ6L2Q6UXD5 910 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 DEF8Q6ZN54 512 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 Q6ZNX1 250 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 TAC4Q86UU9 113 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 ITIH5Q86UX2 942 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 AMIGO1Q86WK6 493 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 CHERPQ8IWX8 916 aaKnown RBP5.3□□□□□ -1.56
LIMA1-203ENST00000547825 DTWD1Q8N5C7 304 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 PCNPQ8WW12 178 aaKnown RBP5.3□□□□□ -1.56
LIMA1-203ENST00000547825 HERVK_113Q902F9 699 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 SGCDQ92629 289 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 PIGKQ92643 395 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 SH3YL1Q96HL8 342 aaPredicted RBP5.3□□□□□ -1.56
LIMA1-203ENST00000547825 ZNF597Q96LX8 424 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 CDK5RAP1Q96SZ6 601 aaKnown RBP5.3□□□□□ -1.56
LIMA1-203ENST00000547825 MENTQ9BUN1 341 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 PDZD7Q9H5P4 517 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 LRTM1Q9HBL6 345 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 AP5S1Q9NUS5 200 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 CMTM6Q9NX76 183 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 MKS1Q9NXB0 559 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 MARCH2Q9P0N8 246 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 PTGFRNQ9P2B2 879 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 COL1A2P08123 1366 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 NUPL2O15504 423 aaKnown RBP5.3□□□□□ -1.56
LIMA1-203ENST00000547825 CDK14O94921 469 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 OTCP00480 354 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 RPLP0P05388 317 aaKnown RBP5.3□□□□□ -1.56
LIMA1-203ENST00000547825 HLA-DQB2P05538 268 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 ITGB1P05556 798 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 SBK3P0C264 359 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 TYMPP19971 482 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 THPOP40225 353 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 ETV3P41162 512 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 LSSP48449 732 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 GPR15P49685 360 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 FOXA1P55317 472 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 HERVK_113P63132 956 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 LGALS3BPQ08380 585 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 MAD2L1Q13257 205 aaPredicted RBP5.3□□□□□ -1.56
LIMA1-203ENST00000547825 C5orf22Q49AR2 442 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 CPZQ66K79 652 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 BHLHB9Q6PI77 547 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 IGF2-ASQ6U949 168 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 ENPP6Q6UWR7 440 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 Q6ZNB5 142 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 PLEKHG7Q6ZR37 379 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 PLPPR4Q7Z2D5 763 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 CADM2Q8N3J6 435 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 C2orf73Q8N5S3 287 aaPredicted RBP5.3□□□□□ -1.56
LIMA1-203ENST00000547825 CLDN19Q8N6F1 224 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 PACRGLQ8N7B6 248 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 NUP210Q8TEM1 1887 aaPredicted RBP5.3□□□□□ -1.56
LIMA1-203ENST00000547825 SLC35F5Q8WV83 523 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 ANKRD49Q8WVL7 239 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 ARNTL2Q8WYA1 636 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 MYLPFQ96A32 169 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 OTUB1Q96FW1 271 aaPredicted RBP5.3□□□□□ -1.56
LIMA1-203ENST00000547825 C3orf30Q96M34 536 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 HNRNPABQ99729 332 aaKnown RBP5.3□□□□□ -1.56
LIMA1-203ENST00000547825 TCF25Q9BQ70 676 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 CENPOQ9BU64 300 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 SARGQ9BW04 601 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 ERVK-6Q9BXR3 956 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 TBC1D17Q9HA65 648 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 MCUBQ9NWR8 336 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 GSTK1Q9Y2Q3 226 aa5.3□□□□□ -1.56
LIMA1-203ENST00000547825 DNAJC15Q9Y5T4 150 aa5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms