RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 MFSD4BQ5TF39 518 aa7.99□□□□□ -1.13
USP28-215ENST00000545608 ABHD17BQ5VST6 288 aa7.99□□□□□ -1.13
USP28-215ENST00000545608 FCRLBQ6BAA4 426 aa7.99□□□□□ -1.13
USP28-215ENST00000545608 CCDC137Q6PK04 289 aaKnown RBP7.99□□□□□ -1.13
USP28-215ENST00000545608 AGTRAPQ6RW13 159 aa7.99□□□□□ -1.13
USP28-215ENST00000545608 PAQR3Q6TCH7 311 aa7.99□□□□□ -1.13
USP28-215ENST00000545608 GFRALQ6UXV0 394 aa7.99□□□□□ -1.13
USP28-215ENST00000545608 MBOAT1Q6ZNC8 495 aa7.99□□□□□ -1.13
USP28-215ENST00000545608 CPEB2Q7Z5Q1 589 aaKnown RBP7.99□□□□□ -1.13
USP28-215ENST00000545608 LMNTD2Q8IXW0 634 aa7.99□□□□□ -1.13
USP28-215ENST00000545608 SRRM1Q8IYB3 904 aaKnown RBP7.99□□□□□ -1.13
USP28-215ENST00000545608 SLC34A3Q8N130 599 aa7.99□□□□□ -1.13
USP28-215ENST00000545608 KCT2Q8NC54 265 aa7.99□□□□□ -1.13
USP28-215ENST00000545608 CALML6Q8TD86 181 aa7.99□□□□□ -1.13
USP28-215ENST00000545608 MCOLN3Q8TDD5 553 aa7.99□□□□□ -1.13
USP28-215ENST00000545608 EEF1AKMT1Q8WVE0 214 aa7.99□□□□□ -1.13
USP28-215ENST00000545608 METTL21AQ8WXB1 218 aa7.99□□□□□ -1.13
USP28-215ENST00000545608 TM4SF19Q96DZ7 209 aa7.99□□□□□ -1.13
USP28-215ENST00000545608 NDNQ99608 321 aa7.99□□□□□ -1.13
USP28-215ENST00000545608 RNF32Q9H0A6 362 aa7.99□□□□□ -1.13
USP28-215ENST00000545608 ATG10Q9H0Y0 220 aa7.99□□□□□ -1.13
USP28-215ENST00000545608 TIMMDC1Q9NPL8 285 aa7.99□□□□□ -1.13
USP28-215ENST00000545608 CCDC177Q9NQR7 707 aaPredicted RBP7.99□□□□□ -1.13
USP28-215ENST00000545608 TRMT6Q9UJA5 497 aaKnown RBP7.99□□□□□ -1.13
USP28-215ENST00000545608 ENTPD4Q9Y227 616 aa7.99□□□□□ -1.13
USP28-215ENST00000545608 PPP2R2CQ9Y2T4 447 aa7.99□□□□□ -1.13
USP28-215ENST00000545608 COMMD10Q9Y6G5 202 aa7.99□□□□□ -1.13
USP28-215ENST00000545608 HEATR5BQ9P2D3 2071 aa7.98□□□□□ -1.13
USP28-215ENST00000545608 TRGV8A0A0C4DH27 118 aa7.98□□□□□ -1.13
USP28-215ENST00000545608 ENO4A6NNW6 628 aa7.98□□□□□ -1.13
USP28-215ENST00000545608 PRSS44E7EML9 344 aa7.98□□□□□ -1.13
USP28-215ENST00000545608 EIF3FO00303 357 aaPredicted RBP7.98□□□□□ -1.13
USP28-215ENST00000545608 EIF1AYO14602 144 aaKnown RBP7.98□□□□□ -1.13
USP28-215ENST00000545608 MAN1A2O60476 641 aa7.98□□□□□ -1.13
USP28-215ENST00000545608 PRAMEF2O60811 474 aa7.98□□□□□ -1.13
USP28-215ENST00000545608 DNAJB6O75190 326 aa7.98□□□□□ -1.13
USP28-215ENST00000545608 BANF1O75531 89 aa7.98□□□□□ -1.13
USP28-215ENST00000545608 UNC5CO95185 931 aa7.98□□□□□ -1.13
USP28-215ENST00000545608 CDH1P12830 882 aa7.98□□□□□ -1.13
USP28-215ENST00000545608 EPB42P16452 691 aa7.98□□□□□ -1.13
USP28-215ENST00000545608 NPPBP16860 134 aa7.98□□□□□ -1.13
USP28-215ENST00000545608 GRNP28799 593 aaKnown RBP7.98□□□□□ -1.13
USP28-215ENST00000545608 XCR1P46094 333 aa7.98□□□□□ -1.13
USP28-215ENST00000545608 PGGT1BP53609 377 aa7.98□□□□□ -1.13
USP28-215ENST00000545608 CDKN2DP55273 166 aa7.98□□□□□ -1.13
USP28-215ENST00000545608 PMP22Q01453 160 aa7.98□□□□□ -1.13
USP28-215ENST00000545608 PHKG1Q16816 387 aa7.98□□□□□ -1.13
USP28-215ENST00000545608 BTBD16Q32M84 506 aa7.98□□□□□ -1.13
USP28-215ENST00000545608 RBM20Q5T481 1227 aaKnown RBP7.98□□□□□ -1.13
USP28-215ENST00000545608 PLAG1Q6DJT9 500 aa7.98□□□□□ -1.13
USP28-215ENST00000545608 H3F3CQ6NXT2 135 aa7.98□□□□□ -1.13
USP28-215ENST00000545608 ANKRD37Q7Z713 158 aa7.98□□□□□ -1.13
USP28-215ENST00000545608 ASPGQ86U10 573 aa7.98□□□□□ -1.13
USP28-215ENST00000545608 SLC26A11Q86WA9 606 aa7.98□□□□□ -1.13
USP28-215ENST00000545608 PDSS2Q86YH6 399 aa7.98□□□□□ -1.13
USP28-215ENST00000545608 CAMKVQ8NCB2 501 aa7.98□□□□□ -1.13
USP28-215ENST00000545608 C2CD4AQ8NCU7 369 aaPredicted RBP7.98□□□□□ -1.13
USP28-215ENST00000545608 DNAJB8Q8NHS0 232 aa7.98□□□□□ -1.13
USP28-215ENST00000545608 SUN3Q8TAQ9 357 aa7.98□□□□□ -1.13
USP28-215ENST00000545608 ZCCHC10Q8TBK6 192 aa7.98□□□□□ -1.13
USP28-215ENST00000545608 RNF217Q8TC41 542 aa7.98□□□□□ -1.13
USP28-215ENST00000545608 SLC13A3Q8WWT9 602 aa7.98□□□□□ -1.13
USP28-215ENST00000545608 ITLN2Q8WWU7 325 aaPredicted RBP7.98□□□□□ -1.13
USP28-215ENST00000545608 HSH2DQ96JZ2 352 aa7.98□□□□□ -1.13
USP28-215ENST00000545608 PBKQ96KB5 322 aa7.98□□□□□ -1.13
USP28-215ENST00000545608 NPAS2Q99743 824 aa7.98□□□□□ -1.13
USP28-215ENST00000545608 UNKQ9C0B0 810 aaKnown RBP7.98□□□□□ -1.13
USP28-215ENST00000545608 PCBD2Q9H0N5 130 aa7.98□□□□□ -1.13
USP28-215ENST00000545608 PARVBQ9HBI1 364 aa7.98□□□□□ -1.13
USP28-215ENST00000545608 ANKHQ9HCJ1 492 aa7.98□□□□□ -1.13
USP28-215ENST00000545608 ABI3Q9P2A4 366 aa7.98□□□□□ -1.13
USP28-215ENST00000545608 COPG2Q9UBF2 871 aa7.98□□□□□ -1.13
USP28-215ENST00000545608 SEC14L3Q9UDX4 400 aa7.98□□□□□ -1.13
USP28-215ENST00000545608 DMGDHQ9UI17 866 aaKnown RBP7.98□□□□□ -1.13
USP28-215ENST00000545608 MYO9AB2RTY4 2548 aa7.97□□□□□ -1.13
USP28-215ENST00000545608 ZNF860A6NHJ4 632 aa7.97□□□□□ -1.13
USP28-215ENST00000545608 SLC16A5O15375 505 aa7.97□□□□□ -1.13
USP28-215ENST00000545608 HNRNPRO43390 633 aaKnown RBP7.97□□□□□ -1.13
USP28-215ENST00000545608 RDH16O75452 317 aa7.97□□□□□ -1.13
USP28-215ENST00000545608 B3GALT4O96024 378 aa7.97□□□□□ -1.13
USP28-215ENST00000545608 CRYABP02511 175 aaKnown RBP7.97□□□□□ -1.13
USP28-215ENST00000545608 AHSGP02765 367 aa7.97□□□□□ -1.13
USP28-215ENST00000545608 C8GP07360 202 aa7.97□□□□□ -1.13
USP28-215ENST00000545608 CYC1P08574 325 aa7.97□□□□□ -1.13
USP28-215ENST00000545608 PGAM1P18669 254 aa7.97□□□□□ -1.13
USP28-215ENST00000545608 TNFRSF8P28908 595 aa7.97□□□□□ -1.13
USP28-215ENST00000545608 CD96P40200 585 aa7.97□□□□□ -1.13
USP28-215ENST00000545608 CA7P43166 264 aa7.97□□□□□ -1.13
USP28-215ENST00000545608 RGS4P49798 205 aa7.97□□□□□ -1.13
USP28-215ENST00000545608 AGTR2P50052 363 aa7.97□□□□□ -1.13
USP28-215ENST00000545608 AP2B1P63010 937 aa7.97□□□□□ -1.13
USP28-215ENST00000545608 MEF2AQ02078 507 aaPredicted RBP7.97□□□□□ -1.13
USP28-215ENST00000545608 RHAGQ02094 409 aa7.97□□□□□ -1.13
USP28-215ENST00000545608 TUBA3CQ13748 450 aa7.97□□□□□ -1.13
USP28-215ENST00000545608 PTK6Q13882 451 aa7.97□□□□□ -1.13
USP28-215ENST00000545608 CRYMQ14894 314 aa7.97□□□□□ -1.13
USP28-215ENST00000545608 ZNF766Q5HY98 468 aa7.97□□□□□ -1.13
USP28-215ENST00000545608 ACER2Q5QJU3 275 aa7.97□□□□□ -1.13
USP28-215ENST00000545608 RNASEH2BQ5TBB1 312 aaKnown RBP7.97□□□□□ -1.13
USP28-215ENST00000545608 CAPN13Q6MZZ7 669 aaPredicted RBP7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms