RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 PAMP19021 973 aa5.09□□□□□ -1.6
USP28-213ENST00000544967 ZP3P21754 424 aa5.09□□□□□ -1.6
USP28-213ENST00000544967 FCARP24071 287 aa5.09□□□□□ -1.6
USP28-213ENST00000544967 PSMB9P28065 219 aa5.09□□□□□ -1.6
USP28-213ENST00000544967 PIGAP37287 484 aa5.09□□□□□ -1.6
USP28-213ENST00000544967 DCTP40126 519 aa5.09□□□□□ -1.6
USP28-213ENST00000544967 SESN2P58004 480 aaPredicted RBP5.09□□□□□ -1.6
USP28-213ENST00000544967 BTG1P62324 171 aa5.09□□□□□ -1.6
USP28-213ENST00000544967 HERVK_113P63132 956 aa5.09□□□□□ -1.6
USP28-213ENST00000544967 CYP4F2P78329 520 aa5.09□□□□□ -1.6
USP28-213ENST00000544967 SLC6A3Q01959 620 aa5.09□□□□□ -1.6
USP28-213ENST00000544967 CYP4F3Q08477 520 aa5.09□□□□□ -1.6
USP28-213ENST00000544967 SCRN3Q0VDG4 424 aa5.09□□□□□ -1.6
USP28-213ENST00000544967 CDH17Q12864 832 aa5.09□□□□□ -1.6
USP28-213ENST00000544967 ZNF667Q5HYK9 610 aa5.09□□□□□ -1.6
USP28-213ENST00000544967 RPS26P11Q5JNZ5 115 aaPredicted RBP5.09□□□□□ -1.6
USP28-213ENST00000544967 PCID2Q5JVF3 399 aa5.09□□□□□ -1.6
USP28-213ENST00000544967 ZNF678Q5SXM1 525 aa5.09□□□□□ -1.6
USP28-213ENST00000544967 SLC35F1Q5T1Q4 408 aa5.09□□□□□ -1.6
USP28-213ENST00000544967 GARNL3Q5VVW2 1013 aa5.09□□□□□ -1.6
USP28-213ENST00000544967 WSCD1Q658N2 575 aa5.09□□□□□ -1.6
USP28-213ENST00000544967 MEX3BQ6ZN04 569 aaKnown RBP5.09□□□□□ -1.6
USP28-213ENST00000544967 PLEKHM3Q6ZWE6 761 aa5.09□□□□□ -1.6
USP28-213ENST00000544967 CCNYL1Q8N7R7 359 aa5.09□□□□□ -1.6
USP28-213ENST00000544967 RHEBL1Q8TAI7 183 aa5.09□□□□□ -1.6
USP28-213ENST00000544967 MYLIPQ8WY64 445 aa5.09□□□□□ -1.6
USP28-213ENST00000544967 PTP4A1Q93096 173 aa5.09□□□□□ -1.6
USP28-213ENST00000544967 TMEM176AQ96HP8 235 aa5.09□□□□□ -1.6
USP28-213ENST00000544967 RNF145Q96MT1 663 aa5.09□□□□□ -1.6
USP28-213ENST00000544967 COL21A1Q96P44 957 aa5.09□□□□□ -1.6
USP28-213ENST00000544967 PELOQ9BRX2 385 aaKnown RBP5.09□□□□□ -1.6
USP28-213ENST00000544967 ERVK-6Q9BXR3 956 aa5.09□□□□□ -1.6
USP28-213ENST00000544967 GABARAPL3Q9BY60 117 aa5.09□□□□□ -1.6
USP28-213ENST00000544967 B3GNT5Q9BYG0 378 aa5.09□□□□□ -1.6
USP28-213ENST00000544967 REXO4Q9GZR2 422 aaKnown RBP5.09□□□□□ -1.6
USP28-213ENST00000544967 SRRQ9GZT4 340 aa5.09□□□□□ -1.6
USP28-213ENST00000544967 AKTIPQ9H8T0 292 aa5.09□□□□□ -1.6
USP28-213ENST00000544967 RNF121Q9H920 327 aa5.09□□□□□ -1.6
USP28-213ENST00000544967 MAT2BQ9NZL9 334 aa5.09□□□□□ -1.6
USP28-213ENST00000544967 SLC17A6Q9P2U8 582 aa5.09□□□□□ -1.6
USP28-213ENST00000544967 SLC39A10Q9ULF5 831 aa5.09□□□□□ -1.6
USP28-213ENST00000544967 PPT2Q9UMR5 302 aa5.09□□□□□ -1.6
USP28-213ENST00000544967 LAMA2P24043 3122 aaKnown RBP5.09□□□□□ -1.6
USP28-213ENST00000544967 FAM95CA0A1B0GW59 222 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 FAM220BPB1ANY3 271 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 ANKRD28O15084 1053 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 HRO43593 1189 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 ADAM11O75078 769 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 GLUD1P00367 558 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 AGXTP21549 392 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 MYL9P24844 172 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 EVI2BP34910 448 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 ARL4AP40617 200 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 GBX2P52951 348 aaPredicted RBP5.08□□□□□ -1.6
USP28-213ENST00000544967 BLVRAP53004 296 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 GPR85P60893 370 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 OSTNP61366 133 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 TFAMQ00059 246 aaKnown RBP5.08□□□□□ -1.6
USP28-213ENST00000544967 HYAL2Q12891 473 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 MAB21L1Q13394 359 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 KIF19Q2TAC6 998 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 HKDC1Q2TB90 917 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 XKR7Q5GH72 579 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 TRNP1Q6NT89 227 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 NRARPQ7Z6K4 114 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 GALNT10Q86SR1 603 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 ZFAND4Q86XD8 727 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 ZNF687Q8N1G0 1237 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 OR4M1Q8NGD0 313 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 MAFAQ8NHW3 353 aaPredicted RBP5.08□□□□□ -1.6
USP28-213ENST00000544967 ASB15Q8WXK1 588 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 P2RY11Q96G91 374 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 ZSWIM3Q96MP5 696 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 TRNT1Q96Q11 434 aaKnown RBP5.08□□□□□ -1.6
USP28-213ENST00000544967 SECISBP2Q96T21 854 aaKnown RBP5.08□□□□□ -1.6
USP28-213ENST00000544967 NCOR1P1Q9H4R4 102 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 NT5DC2Q9H857 520 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 HEBP1Q9NRV9 189 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 TMEM30AQ9NV96 361 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 CACNG4Q9UBN1 327 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 KIF25Q9UIL4 384 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 PCDHB5Q9Y5E4 795 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 V9GYH0 126 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 CXorf51AA0A1B0GTR3 108 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 NT5C1B-RDH14C9J2C7 533 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 H7C0S8 307 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 DOK2O60496 412 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 TPST1O60507 370 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 HUS1O60921 280 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 RFPL3O75679 317 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 CXCL14O95715 111 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 F11P03951 625 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 TPOP07202 933 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 HOXD4P09016 255 aaPredicted RBP5.08□□□□□ -1.6
USP28-213ENST00000544967 PF4V1P10720 104 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 SLC2A3P11169 496 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 FOSL2P15408 326 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 ZNF3P17036 446 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 ARNTP27540 789 aa5.08□□□□□ -1.6
USP28-213ENST00000544967 PBX3P40426 434 aa5.08□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms