RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 UFD1Q92890 307 aa13.78□□□□□ -0.2
LIMS1-215ENST00000544547 COQ8BQ96D53 544 aa13.78□□□□□ -0.2
LIMS1-215ENST00000544547 KHDRBS3O75525 346 aaKnown RBP13.77□□□□□ -0.2
LIMS1-215ENST00000544547 NR2F1P10589 423 aa13.77□□□□□ -0.2
LIMS1-215ENST00000544547 BCKDHAP12694 445 aa13.77□□□□□ -0.2
LIMS1-215ENST00000544547 HOXA11P31270 313 aaPredicted RBP13.77□□□□□ -0.2
LIMS1-215ENST00000544547 RPL35P42766 123 aaKnown RBP13.77□□□□□ -0.2
LIMS1-215ENST00000544547 CTF1Q16619 201 aa13.77□□□□□ -0.2
LIMS1-215ENST00000544547 VMACQ2NL98 169 aa13.77□□□□□ -0.2
LIMS1-215ENST00000544547 FLYWCH1Q4VC44 716 aa13.77□□□□□ -0.2
LIMS1-215ENST00000544547 SERPINA9Q86WD7 417 aa13.77□□□□□ -0.2
LIMS1-215ENST00000544547 SLC5A8Q8N695 610 aa13.77□□□□□ -0.2
LIMS1-215ENST00000544547 TBX5Q99593 518 aa13.77□□□□□ -0.2
LIMS1-215ENST00000544547 INPP5KQ9BT40 448 aa13.77□□□□□ -0.2
LIMS1-215ENST00000544547 SEC14L4Q9UDX3 406 aa13.77□□□□□ -0.2
LIMS1-215ENST00000544547 NINQ8N4C6 2090 aa13.77□□□□□ -0.2
LIMS1-215ENST00000544547 BTAF1O14981 1849 aa13.77□□□□□ -0.2
LIMS1-215ENST00000544547 MEIS3P2A8K0S8 358 aa13.77□□□□□ -0.21
LIMS1-215ENST00000544547 NME6O75414 186 aaPredicted RBP13.77□□□□□ -0.21
LIMS1-215ENST00000544547 OR5F1O95221 314 aa13.77□□□□□ -0.21
LIMS1-215ENST00000544547 APOC3P02656 99 aa13.77□□□□□ -0.21
LIMS1-215ENST00000544547 PRKCAP17252 672 aa13.77□□□□□ -0.21
LIMS1-215ENST00000544547 PPIBP23284 216 aaKnown RBP13.77□□□□□ -0.21
LIMS1-215ENST00000544547 ARNTP27540 789 aa13.77□□□□□ -0.21
LIMS1-215ENST00000544547 MAPK9P45984 424 aa13.77□□□□□ -0.21
LIMS1-215ENST00000544547 GRIK2Q13002 908 aa13.77□□□□□ -0.21
LIMS1-215ENST00000544547 XAF1Q6GPH4 301 aa13.77□□□□□ -0.21
LIMS1-215ENST00000544547 MFSD6LQ8IWD5 586 aa13.77□□□□□ -0.21
LIMS1-215ENST00000544547 COQ8AQ8NI60 647 aa13.77□□□□□ -0.21
LIMS1-215ENST00000544547 XAGE5Q8WWM1 108 aa13.77□□□□□ -0.21
LIMS1-215ENST00000544547 ING5Q8WYH8 240 aa13.77□□□□□ -0.21
LIMS1-215ENST00000544547 PPCDCQ96CD2 204 aa13.77□□□□□ -0.21
LIMS1-215ENST00000544547 CCM2Q9BSQ5 444 aa13.77□□□□□ -0.21
LIMS1-215ENST00000544547 NMUR1Q9HB89 426 aa13.77□□□□□ -0.21
LIMS1-215ENST00000544547 ABCD2Q9UBJ2 740 aa13.77□□□□□ -0.21
LIMS1-215ENST00000544547 M0R233 179 aa13.77□□□□□ -0.21
LIMS1-215ENST00000544547 MAFKO60675 156 aa13.77□□□□□ -0.21
LIMS1-215ENST00000544547 RPN2P04844 631 aa13.77□□□□□ -0.21
LIMS1-215ENST00000544547 ZNF806P0C7X5 589 aa13.77□□□□□ -0.21
LIMS1-215ENST00000544547 RAB8AP61006 207 aa13.77□□□□□ -0.21
LIMS1-215ENST00000544547 ZXDBP98169 803 aa13.77□□□□□ -0.21
LIMS1-215ENST00000544547 SP3Q02447 781 aa13.77□□□□□ -0.21
LIMS1-215ENST00000544547 SLAMF1Q13291 335 aa13.77□□□□□ -0.21
LIMS1-215ENST00000544547 TCEA2Q15560 299 aa13.77□□□□□ -0.21
LIMS1-215ENST00000544547 CLEC12AQ5QGZ9 265 aa13.77□□□□□ -0.21
LIMS1-215ENST00000544547 TNFAIP8L2Q6P589 184 aaPredicted RBP13.77□□□□□ -0.21
LIMS1-215ENST00000544547 RHEBL1Q8TAI7 183 aa13.77□□□□□ -0.21
LIMS1-215ENST00000544547 DYNC2LI1Q8TCX1 351 aa13.77□□□□□ -0.21
LIMS1-215ENST00000544547 MAL2Q969L2 176 aa13.77□□□□□ -0.21
LIMS1-215ENST00000544547 ZNF583Q96ND8 569 aa13.77□□□□□ -0.21
LIMS1-215ENST00000544547 GON7Q9BXV9 100 aa13.77□□□□□ -0.21
LIMS1-215ENST00000544547 IGFLR1Q9H665 355 aa13.77□□□□□ -0.21
LIMS1-215ENST00000544547 FARSBQ9NSD9 589 aaKnown RBP13.77□□□□□ -0.21
LIMS1-215ENST00000544547 TAS2R7Q9NYW3 318 aa13.77□□□□□ -0.21
LIMS1-215ENST00000544547 SEC14L3Q9UDX4 400 aa13.77□□□□□ -0.21
LIMS1-215ENST00000544547 ARL5CA6NH57 179 aa13.76□□□□□ -0.21
LIMS1-215ENST00000544547 METTL15A6NJ78 407 aa13.76□□□□□ -0.21
LIMS1-215ENST00000544547 TTC34A8MYJ7 566 aa13.76□□□□□ -0.21
LIMS1-215ENST00000544547 FXYD1O00168 92 aa13.76□□□□□ -0.21
LIMS1-215ENST00000544547 PIRO00625 290 aa13.76□□□□□ -0.21
LIMS1-215ENST00000544547 UGT2B17O75795 530 aa13.76□□□□□ -0.21
LIMS1-215ENST00000544547 PRG2P13727 222 aa13.76□□□□□ -0.21
LIMS1-215ENST00000544547 SSTR2P30874 369 aa13.76□□□□□ -0.21
LIMS1-215ENST00000544547 BTN1A1Q13410 526 aa13.76□□□□□ -0.21
LIMS1-215ENST00000544547 EFR3AQ14156 821 aa13.76□□□□□ -0.21
LIMS1-215ENST00000544547 RANBP10Q6VN20 620 aa13.76□□□□□ -0.21
LIMS1-215ENST00000544547 MON1AQ86VX9 555 aa13.76□□□□□ -0.21
LIMS1-215ENST00000544547 SLC22A15Q8IZD6 547 aa13.76□□□□□ -0.21
LIMS1-215ENST00000544547 ATP6V1C2Q8NEY4 427 aa13.76□□□□□ -0.21
LIMS1-215ENST00000544547 ZNF382Q96SR6 550 aa13.76□□□□□ -0.21
LIMS1-215ENST00000544547 C16orf70Q9BSU1 422 aa13.76□□□□□ -0.21
LIMS1-215ENST00000544547 TTLL2Q9BWV7 592 aa13.76□□□□□ -0.21
LIMS1-215ENST00000544547 SGK2Q9HBY8 427 aa13.76□□□□□ -0.21
LIMS1-215ENST00000544547 DCAF13Q9NV06 445 aaKnown RBP13.76□□□□□ -0.21
LIMS1-215ENST00000544547 ARID1BQ8NFD5 2236 aaPredicted RBP13.76□□□□□ -0.21
LIMS1-215ENST00000544547 UBE2QL1A1L167 161 aa13.76□□□□□ -0.21
LIMS1-215ENST00000544547 ESR1P03372 595 aa13.76□□□□□ -0.21
LIMS1-215ENST00000544547 HAPLN1P10915 354 aaPredicted RBP13.76□□□□□ -0.21
LIMS1-215ENST00000544547 PRKAR2AP13861 404 aaKnown RBP13.76□□□□□ -0.21
LIMS1-215ENST00000544547 OR1D2P34982 312 aa13.76□□□□□ -0.21
LIMS1-215ENST00000544547 XKP51811 444 aa13.76□□□□□ -0.21
LIMS1-215ENST00000544547 TUSC3Q13454 348 aa13.76□□□□□ -0.21
LIMS1-215ENST00000544547 ANXA8L1Q5VT79 327 aa13.76□□□□□ -0.21
LIMS1-215ENST00000544547 ATG9BQ674R7 924 aa13.76□□□□□ -0.21
LIMS1-215ENST00000544547 KIAA1161Q6NSJ0 714 aa13.76□□□□□ -0.21
LIMS1-215ENST00000544547 XKRXQ6PP77 449 aa13.76□□□□□ -0.21
LIMS1-215ENST00000544547 KIF18BQ86Y91 864 aa13.76□□□□□ -0.21
LIMS1-215ENST00000544547 KHSRPQ92945 711 aaKnown RBP eCLIP13.76□□□□□ -0.211e-7■■■■□ 21.5
LIMS1-215ENST00000544547 REPS1Q96D71 796 aa13.76□□□□□ -0.21
LIMS1-215ENST00000544547 FAM129BQ96TA1 746 aa13.76□□□□□ -0.21
LIMS1-215ENST00000544547 FAM124BQ9H5Z6 455 aaPredicted RBP13.76□□□□□ -0.21
LIMS1-215ENST00000544547 HCN3Q9P1Z3 774 aa13.76□□□□□ -0.21
LIMS1-215ENST00000544547 GTF2IRD1Q9UHL9 959 aa13.76□□□□□ -0.21
LIMS1-215ENST00000544547 PCTPQ9UKL6 214 aa13.76□□□□□ -0.21
LIMS1-215ENST00000544547 MAU2Q9Y6X3 613 aa13.76□□□□□ -0.21
LIMS1-215ENST00000544547 SLC28A2O43868 658 aa13.76□□□□□ -0.21
LIMS1-215ENST00000544547 GBAP04062 536 aa13.76□□□□□ -0.21
LIMS1-215ENST00000544547 SLC10A3P09131 477 aa13.76□□□□□ -0.21
LIMS1-215ENST00000544547 DNASE1P24855 282 aa13.76□□□□□ -0.21
LIMS1-215ENST00000544547 SLC6A4P31645 630 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms