RNA–Protein interactions for RNA: ENST00000543995.5

TNFRSF1A-216, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 5

Gene TNFRSF1A, Length 1,531 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-216ENST00000543995 RHBGQ9H310 441 aa13.8□□□□□ -0.2
TNFRSF1A-216ENST00000543995 ELOVL6Q9H5J4 265 aa13.8□□□□□ -0.2
TNFRSF1A-216ENST00000543995 CCDC86Q9H6F5 360 aaKnown RBP13.8□□□□□ -0.2
TNFRSF1A-216ENST00000543995 WDR70Q9NW82 654 aa13.8□□□□□ -0.2
TNFRSF1A-216ENST00000543995 ADGRE2Q9UHX3 823 aa13.8□□□□□ -0.2
TNFRSF1A-216ENST00000543995 ZNF225Q9UK10 706 aa13.8□□□□□ -0.2
TNFRSF1A-216ENST00000543995 SNX6Q9UNH7 406 aa13.8□□□□□ -0.2
TNFRSF1A-216ENST00000543995 TMEM184BQ9Y519 407 aaPredicted RBP13.8□□□□□ -0.2
TNFRSF1A-216ENST00000543995 TEX51A0A1B0GUA7 166 aa13.79□□□□□ -0.2
TNFRSF1A-216ENST00000543995 URADA6NGE7 173 aa13.79□□□□□ -0.2
TNFRSF1A-216ENST00000543995 CLEC3AO75596 197 aa13.79□□□□□ -0.2
TNFRSF1A-216ENST00000543995 HSPA4LO95757 839 aa13.79□□□□□ -0.2
TNFRSF1A-216ENST00000543995 ENO1P06733 434 aaKnown RBP13.79□□□□□ -0.2
TNFRSF1A-216ENST00000543995 CHRNGP07510 517 aa13.79□□□□□ -0.2
TNFRSF1A-216ENST00000543995 SERPINA6P08185 405 aa13.79□□□□□ -0.2
TNFRSF1A-216ENST00000543995 SERPINB1P30740 379 aa13.79□□□□□ -0.2
TNFRSF1A-216ENST00000543995 NEK2P51955 445 aa13.79□□□□□ -0.2
TNFRSF1A-216ENST00000543995 EMP3P54852 163 aa13.79□□□□□ -0.2
TNFRSF1A-216ENST00000543995 STXBP1P61764 594 aaKnown RBP13.79□□□□□ -0.2
TNFRSF1A-216ENST00000543995 SGO1Q5FBB7 561 aa13.79□□□□□ -0.2
TNFRSF1A-216ENST00000543995 ARL13AQ5H913 290 aaPredicted RBP13.79□□□□□ -0.2
TNFRSF1A-216ENST00000543995 TOR1AIP1Q5JTV8 583 aa13.79□□□□□ -0.2
TNFRSF1A-216ENST00000543995 C1orf189Q5VU69 101 aa13.79□□□□□ -0.2
TNFRSF1A-216ENST00000543995 GARNL3Q5VVW2 1013 aa13.79□□□□□ -0.2
TNFRSF1A-216ENST00000543995 TMEM214Q6NUQ4 689 aaKnown RBP13.79□□□□□ -0.2
TNFRSF1A-216ENST00000543995 C6orf15Q6UXA7 325 aaPredicted RBP13.79□□□□□ -0.2
TNFRSF1A-216ENST00000543995 VN1R5Q7Z5H4 357 aa13.79□□□□□ -0.2
TNFRSF1A-216ENST00000543995 CUZD1Q86UP6 607 aa13.79□□□□□ -0.2
TNFRSF1A-216ENST00000543995 SLC38A9Q8NBW4 561 aa13.79□□□□□ -0.2
TNFRSF1A-216ENST00000543995 WDR20Q8TBZ3 569 aa13.79□□□□□ -0.2
TNFRSF1A-216ENST00000543995 GATA6Q92908 595 aa13.79□□□□□ -0.2
TNFRSF1A-216ENST00000543995 KCNA7Q96RP8 456 aa13.79□□□□□ -0.2
TNFRSF1A-216ENST00000543995 ENAMQ9NRM1 1142 aa13.79□□□□□ -0.2
TNFRSF1A-216ENST00000543995 FIS1Q9Y3D6 152 aa13.79□□□□□ -0.2
TNFRSF1A-216ENST00000543995 A0A1B0GX78 115 aa13.78□□□□□ -0.2
TNFRSF1A-216ENST00000543995 TMEM114B3SHH9 223 aa13.78□□□□□ -0.2
TNFRSF1A-216ENST00000543995 DSCR3O14972 297 aa13.78□□□□□ -0.2
TNFRSF1A-216ENST00000543995 SH3BGRLO75368 114 aa13.78□□□□□ -0.2
TNFRSF1A-216ENST00000543995 TGFB1P01137 390 aa13.78□□□□□ -0.2
TNFRSF1A-216ENST00000543995 KRT6AP02538 564 aa13.78□□□□□ -0.2
TNFRSF1A-216ENST00000543995 KRT6BP04259 564 aa13.78□□□□□ -0.2
TNFRSF1A-216ENST00000543995 CCNYL3P0C7X3 344 aa13.78□□□□□ -0.2
TNFRSF1A-216ENST00000543995 AGXTP21549 392 aa13.78□□□□□ -0.2
TNFRSF1A-216ENST00000543995 GRK2P25098 689 aa13.78□□□□□ -0.2
TNFRSF1A-216ENST00000543995 PIK3CBP42338 1070 aa13.78□□□□□ -0.2
TNFRSF1A-216ENST00000543995 KRT6CP48668 564 aa13.78□□□□□ -0.2
TNFRSF1A-216ENST00000543995 ATP1A2P50993 1020 aa13.78□□□□□ -0.2
TNFRSF1A-216ENST00000543995 PCBP4P57723 403 aaKnown RBP13.78□□□□□ -0.2
TNFRSF1A-216ENST00000543995 GALNT1Q10472 559 aaPredicted RBP13.78□□□□□ -0.2
TNFRSF1A-216ENST00000543995 STX3Q13277 289 aa13.78□□□□□ -0.2
TNFRSF1A-216ENST00000543995 ABHD13Q7L211 337 aa13.78□□□□□ -0.2
TNFRSF1A-216ENST00000543995 TRIM42Q8IWZ5 723 aa13.78□□□□□ -0.2
TNFRSF1A-216ENST00000543995 NLGN4XQ8N0W4 816 aa13.78□□□□□ -0.2
TNFRSF1A-216ENST00000543995 RNF175Q8N4F7 328 aa13.78□□□□□ -0.2
TNFRSF1A-216ENST00000543995 ESX1Q8N693 406 aa13.78□□□□□ -0.2
TNFRSF1A-216ENST00000543995 METTL27Q8N6F8 245 aaPredicted RBP13.78□□□□□ -0.2
TNFRSF1A-216ENST00000543995 NLGN4YQ8NFZ3 816 aaPredicted RBP13.78□□□□□ -0.2
TNFRSF1A-216ENST00000543995 PROKR1Q8TCW9 393 aa13.78□□□□□ -0.2
TNFRSF1A-216ENST00000543995 ZNF473Q8WTR7 871 aaKnown RBP13.78□□□□□ -0.2
TNFRSF1A-216ENST00000543995 SELENOMQ8WWX9 145 aa13.78□□□□□ -0.2
TNFRSF1A-216ENST00000543995 MR1Q95460 341 aa13.78□□□□□ -0.2
TNFRSF1A-216ENST00000543995 CMTM7Q96FZ5 175 aa13.78□□□□□ -0.2
TNFRSF1A-216ENST00000543995 C10orf90Q96M02 699 aa13.78□□□□□ -0.2
TNFRSF1A-216ENST00000543995 SLC29A3Q9BZD2 475 aa13.78□□□□□ -0.2
TNFRSF1A-216ENST00000543995 REXO4Q9GZR2 422 aaKnown RBP13.78□□□□□ -0.2
TNFRSF1A-216ENST00000543995 INTS9Q9NV88 658 aaKnown RBP13.78□□□□□ -0.2
TNFRSF1A-216ENST00000543995 MRPS2Q9Y399 296 aaKnown RBP13.78□□□□□ -0.2
TNFRSF1A-216ENST00000543995 TSC22D4Q9Y3Q8 395 aa13.78□□□□□ -0.2
TNFRSF1A-216ENST00000543995 TIMM22Q9Y584 194 aa13.78□□□□□ -0.2
TNFRSF1A-216ENST00000543995 SCN3AQ9NY46 2000 aa13.78□□□□□ -0.2
TNFRSF1A-216ENST00000543995 LRIT2A6NDA9 550 aa13.77□□□□□ -0.21
TNFRSF1A-216ENST00000543995 MAGEB17A8MXT2 336 aa13.77□□□□□ -0.21
TNFRSF1A-216ENST00000543995 MEN1O00255 615 aa13.77□□□□□ -0.21
TNFRSF1A-216ENST00000543995 RAD1O60671 282 aa13.77□□□□□ -0.21
TNFRSF1A-216ENST00000543995 ULK1O75385 1050 aa13.77□□□□□ -0.21
TNFRSF1A-216ENST00000543995 MED26O95402 600 aa13.77□□□□□ -0.21
TNFRSF1A-216ENST00000543995 DLGAP3O95886 979 aa13.77□□□□□ -0.21
TNFRSF1A-216ENST00000543995 ZNF888P0CJ79 500 aaPredicted RBP13.77□□□□□ -0.21
TNFRSF1A-216ENST00000543995 HNRNPH1P31943 449 aaKnown RBP13.77□□□□□ -0.21
TNFRSF1A-216ENST00000543995 AVPR1BP47901 424 aa13.77□□□□□ -0.21
TNFRSF1A-216ENST00000543995 SLC1A6P48664 564 aa13.77□□□□□ -0.21
TNFRSF1A-216ENST00000543995 FOXA1P55317 472 aa13.77□□□□□ -0.21
TNFRSF1A-216ENST00000543995 ABCE1P61221 599 aaKnown RBP13.77□□□□□ -0.21
TNFRSF1A-216ENST00000543995 RPS13P62277 151 aaKnown RBP13.77□□□□□ -0.21
TNFRSF1A-216ENST00000543995 ABHD18Q0P651 414 aa13.77□□□□□ -0.21
TNFRSF1A-216ENST00000543995 FAM53BQ14153 422 aa13.77□□□□□ -0.21
TNFRSF1A-216ENST00000543995 TCHHL1Q5QJ38 904 aaPredicted RBP13.77□□□□□ -0.21
TNFRSF1A-216ENST00000543995 C10orf62Q5T681 223 aaPredicted RBP13.77□□□□□ -0.21
TNFRSF1A-216ENST00000543995 FAM219BQ5XKK7 198 aa13.77□□□□□ -0.21
TNFRSF1A-216ENST00000543995 ATG16L1Q676U5 607 aa13.77□□□□□ -0.21
TNFRSF1A-216ENST00000543995 CLEC6AQ6EIG7 209 aa13.77□□□□□ -0.21
TNFRSF1A-216ENST00000543995 CHSY3Q70JA7 882 aa13.77□□□□□ -0.21
TNFRSF1A-216ENST00000543995 TIPARPQ7Z3E1 657 aaKnown RBP13.77□□□□□ -0.21
TNFRSF1A-216ENST00000543995 OR6Y1Q8NGX8 325 aa13.77□□□□□ -0.21
TNFRSF1A-216ENST00000543995 AGR3Q8TD06 166 aa13.77□□□□□ -0.21
TNFRSF1A-216ENST00000543995 FGF11Q92914 225 aa13.77□□□□□ -0.21
TNFRSF1A-216ENST00000543995 LRFN5Q96NI6 719 aa13.77□□□□□ -0.21
TNFRSF1A-216ENST00000543995 SLC6A16Q9GZN6 736 aa13.77□□□□□ -0.21
TNFRSF1A-216ENST00000543995 KLHL31Q9H511 634 aa13.77□□□□□ -0.21
TNFRSF1A-216ENST00000543995 ANKHQ9HCJ1 492 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms