RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 HSD3B1P14060 373 aa11.61□□□□□ -0.55
DDX55-210ENST00000543016 NR1D1P20393 614 aa11.61□□□□□ -0.55
DDX55-210ENST00000543016 ZNF10P21506 573 aaPredicted RBP11.61□□□□□ -0.55
DDX55-210ENST00000543016 AGXTP21549 392 aa11.61□□□□□ -0.55
DDX55-210ENST00000543016 PTX3P26022 381 aaPredicted RBP11.61□□□□□ -0.55
DDX55-210ENST00000543016 HSD3B2P26439 372 aa11.61□□□□□ -0.55
DDX55-210ENST00000543016 MEF2AQ02078 507 aaPredicted RBP11.61□□□□□ -0.55
DDX55-210ENST00000543016 HERC3Q15034 1050 aa11.61□□□□□ -0.55
DDX55-210ENST00000543016 ZRSR2Q15696 482 aaKnown RBP11.61□□□□□ -0.55
DDX55-210ENST00000543016 CHI3L2Q15782 390 aa11.61□□□□□ -0.55
DDX55-210ENST00000543016 TTC19Q6DKK2 380 aaPredicted RBP11.61□□□□□ -0.55
DDX55-210ENST00000543016 TMEM214Q6NUQ4 689 aaKnown RBP11.61□□□□□ -0.55
DDX55-210ENST00000543016 CHSY3Q70JA7 882 aa11.61□□□□□ -0.55
DDX55-210ENST00000543016 ABHD13Q7L211 337 aa11.61□□□□□ -0.55
DDX55-210ENST00000543016 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP11.61□□□□□ -0.55
DDX55-210ENST00000543016 ESX1Q8N693 406 aa11.61□□□□□ -0.55
DDX55-210ENST00000543016 ANKRD53Q8N9V6 530 aa11.61□□□□□ -0.55
DDX55-210ENST00000543016 WDR20Q8TBZ3 569 aa11.61□□□□□ -0.55
DDX55-210ENST00000543016 METTL6Q8TCB7 284 aa11.61□□□□□ -0.55
DDX55-210ENST00000543016 ZNF473Q8WTR7 871 aaKnown RBP11.61□□□□□ -0.55
DDX55-210ENST00000543016 FGF11Q92914 225 aa11.61□□□□□ -0.55
DDX55-210ENST00000543016 CMTM7Q96FZ5 175 aa11.61□□□□□ -0.55
DDX55-210ENST00000543016 CTRCQ99895 268 aa11.61□□□□□ -0.55
DDX55-210ENST00000543016 MECRQ9BV79 373 aa11.61□□□□□ -0.55
DDX55-210ENST00000543016 SLC6A16Q9GZN6 736 aa11.61□□□□□ -0.55
DDX55-210ENST00000543016 ROGDIQ9GZN7 287 aa11.61□□□□□ -0.55
DDX55-210ENST00000543016 SPNS1Q9H2V7 528 aa11.61□□□□□ -0.55
DDX55-210ENST00000543016 BRF2Q9HAW0 419 aa11.61□□□□□ -0.55
DDX55-210ENST00000543016 PFDN4Q9NQP4 134 aa11.61□□□□□ -0.55
DDX55-210ENST00000543016 CUTCQ9NTM9 273 aa11.61□□□□□ -0.55
DDX55-210ENST00000543016 RUVBL1Q9Y265 456 aaKnown RBP11.61□□□□□ -0.55
DDX55-210ENST00000543016 NCOR2Q9Y618 2525 aa11.61□□□□□ -0.55
DDX55-210ENST00000543016 A0A1B0GX78 115 aa11.6□□□□□ -0.55
DDX55-210ENST00000543016 SERTM1A2A2V5 107 aa11.6□□□□□ -0.55
DDX55-210ENST00000543016 WDR91A4D1P6 747 aa11.6□□□□□ -0.55
DDX55-210ENST00000543016 AGRPO00253 132 aa11.6□□□□□ -0.55
DDX55-210ENST00000543016 DSCR3O14972 297 aa11.6□□□□□ -0.55
DDX55-210ENST00000543016 ULK1O75385 1050 aa11.6□□□□□ -0.55
DDX55-210ENST00000543016 KIAA0754O94854 1291 aa11.6□□□□□ -0.55
DDX55-210ENST00000543016 OR4F21O95013 312 aa11.6□□□□□ -0.55
DDX55-210ENST00000543016 DLGAP3O95886 979 aa11.6□□□□□ -0.55
DDX55-210ENST00000543016 CHEK2O96017 543 aa11.6□□□□□ -0.55
DDX55-210ENST00000543016 CAPN1P07384 714 aa11.6□□□□□ -0.55
DDX55-210ENST00000543016 UROSP10746 265 aa11.6□□□□□ -0.55
DDX55-210ENST00000543016 PCNAP12004 261 aa11.6□□□□□ -0.55
DDX55-210ENST00000543016 SPINK2P20155 84 aa11.6□□□□□ -0.55
DDX55-210ENST00000543016 HMOX2P30519 316 aa11.6□□□□□ -0.55
DDX55-210ENST00000543016 TSFMP43897 325 aaKnown RBP11.6□□□□□ -0.55
DDX55-210ENST00000543016 ATP1A2P50993 1020 aa11.6□□□□□ -0.55
DDX55-210ENST00000543016 ABHD18Q0P651 414 aa11.6□□□□□ -0.55
DDX55-210ENST00000543016 STX3Q13277 289 aa11.6□□□□□ -0.55
DDX55-210ENST00000543016 CUL3Q13618 768 aa11.6□□□□□ -0.55
DDX55-210ENST00000543016 ADPRMQ3LIE5 342 aa11.6□□□□□ -0.55
DDX55-210ENST00000543016 ARL13AQ5H913 290 aaPredicted RBP11.6□□□□□ -0.55
DDX55-210ENST00000543016 LETMD1Q6P1Q0 360 aa11.6□□□□□ -0.55
DDX55-210ENST00000543016 C6orf15Q6UXA7 325 aaPredicted RBP11.6□□□□□ -0.55
DDX55-210ENST00000543016 RNF165Q6ZSG1 346 aa11.6□□□□□ -0.55
DDX55-210ENST00000543016 SYVN1Q86TM6 617 aa11.6□□□□□ -0.55
DDX55-210ENST00000543016 CUZD1Q86UP6 607 aa11.6□□□□□ -0.55
DDX55-210ENST00000543016 NLGN4XQ8N0W4 816 aa11.6□□□□□ -0.55
DDX55-210ENST00000543016 CLYBLQ8N0X4 340 aa11.6□□□□□ -0.55
DDX55-210ENST00000543016 ARHGEF39Q8N4T4 335 aa11.6□□□□□ -0.55
DDX55-210ENST00000543016 AFAP1L2Q8N4X5 818 aa11.6□□□□□ -0.55
DDX55-210ENST00000543016 GBP7Q8N8V2 638 aaPredicted RBP11.6□□□□□ -0.55
DDX55-210ENST00000543016 NLGN4YQ8NFZ3 816 aaPredicted RBP11.6□□□□□ -0.55
DDX55-210ENST00000543016 HUS1BQ8NHY5 278 aa11.6□□□□□ -0.55
DDX55-210ENST00000543016 MGARPQ8TDB4 240 aa11.6□□□□□ -0.55
DDX55-210ENST00000543016 CLIP3Q96DZ5 547 aa11.6□□□□□ -0.55
DDX55-210ENST00000543016 CDK15Q96Q40 435 aa11.6□□□□□ -0.55
DDX55-210ENST00000543016 SERPINI1Q99574 410 aa11.6□□□□□ -0.55
DDX55-210ENST00000543016 CCT7Q99832 543 aa11.6□□□□□ -0.55
DDX55-210ENST00000543016 CCDC86Q9H6F5 360 aaKnown RBP11.6□□□□□ -0.55
DDX55-210ENST00000543016 INTS9Q9NV88 658 aaKnown RBP11.6□□□□□ -0.55
DDX55-210ENST00000543016 THAP1Q9NVV9 213 aa11.6□□□□□ -0.55
DDX55-210ENST00000543016 FOXJ2Q9P0K8 574 aa11.6□□□□□ -0.55
DDX55-210ENST00000543016 ZNF225Q9UK10 706 aa11.6□□□□□ -0.55
DDX55-210ENST00000543016 PADI1Q9ULC6 663 aa11.6□□□□□ -0.55
DDX55-210ENST00000543016 MED19A0JLT2 244 aaPredicted RBP11.59□□□□□ -0.55
DDX55-210ENST00000543016 PMS2P1A4D2B8 440 aa11.59□□□□□ -0.55
DDX55-210ENST00000543016 LRIT2A6NDA9 550 aa11.59□□□□□ -0.55
DDX55-210ENST00000543016 TMEM8BA6NDV4 472 aa11.59□□□□□ -0.55
DDX55-210ENST00000543016 H0YIG0 161 aa11.59□□□□□ -0.55
DDX55-210ENST00000543016 MEN1O00255 615 aa11.59□□□□□ -0.55
DDX55-210ENST00000543016 PPP6CO00743 305 aa11.59□□□□□ -0.55
DDX55-210ENST00000543016 UBFD1O14562 309 aaKnown RBP11.59□□□□□ -0.55
DDX55-210ENST00000543016 AZIN1O14977 448 aa11.59□□□□□ -0.55
DDX55-210ENST00000543016 SEMA3DO95025 777 aa11.59□□□□□ -0.55
DDX55-210ENST00000543016 TIAF1O95411 115 aa11.59□□□□□ -0.55
DDX55-210ENST00000543016 NSA2O95478 260 aaKnown RBP11.59□□□□□ -0.55
DDX55-210ENST00000543016 HSPA4LO95757 839 aa11.59□□□□□ -0.55
DDX55-210ENST00000543016 SERPIND1P05546 499 aa11.59□□□□□ -0.55
DDX55-210ENST00000543016 LIPCP11150 499 aa11.59□□□□□ -0.55
DDX55-210ENST00000543016 ALOX12P18054 663 aa11.59□□□□□ -0.55
DDX55-210ENST00000543016 TSPAN8P19075 237 aa11.59□□□□□ -0.55
DDX55-210ENST00000543016 RORAP35398 523 aa11.59□□□□□ -0.55
DDX55-210ENST00000543016 AVPR1BP47901 424 aa11.59□□□□□ -0.55
DDX55-210ENST00000543016 PCBP4P57723 403 aaKnown RBP11.59□□□□□ -0.55
DDX55-210ENST00000543016 ABCE1P61221 599 aaKnown RBP11.59□□□□□ -0.55
DDX55-210ENST00000543016 DCDP81605 110 aaKnown RBP11.59□□□□□ -0.55
DDX55-210ENST00000543016 HKDC1Q2TB90 917 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms