RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 NOTCH4Q99466 2003 aa12.07□□□□□ -0.48
RNF4-222ENST00000541204 OR2A25A4D2G3 310 aa12.07□□□□□ -0.48
RNF4-222ENST00000541204 GRXCR1A8MXD5 290 aa12.07□□□□□ -0.48
RNF4-222ENST00000541204 CPSF4O95639 269 aaKnown RBP12.07□□□□□ -0.48
RNF4-222ENST00000541204 ELFN1P0C7U0 828 aa12.07□□□□□ -0.48
RNF4-222ENST00000541204 AMD1P17707 334 aa12.07□□□□□ -0.48
RNF4-222ENST00000541204 EPHA5P54756 1037 aa12.07□□□□□ -0.48
RNF4-222ENST00000541204 PTPN5P54829 565 aa12.07□□□□□ -0.48
RNF4-222ENST00000541204 NPRL3Q12980 569 aa12.07□□□□□ -0.48
RNF4-222ENST00000541204 DUOXA1Q1HG43 343 aa12.07□□□□□ -0.48
RNF4-222ENST00000541204 SYTL3Q4VX76 610 aa12.07□□□□□ -0.48
RNF4-222ENST00000541204 TMEM240Q5SV17 173 aa12.07□□□□□ -0.48
RNF4-222ENST00000541204 NOXRED1Q6NXP6 359 aa12.07□□□□□ -0.48
RNF4-222ENST00000541204 Q6ZPB1 254 aaPredicted RBP12.07□□□□□ -0.48
RNF4-222ENST00000541204 CACUL1Q86Y37 369 aa12.07□□□□□ -0.48
RNF4-222ENST00000541204 CLECL1Q8IZS7 167 aa12.07□□□□□ -0.48
RNF4-222ENST00000541204 APH1BQ8WW43 257 aa12.07□□□□□ -0.48
RNF4-222ENST00000541204 SLC35B4Q969S0 331 aa12.07□□□□□ -0.48
RNF4-222ENST00000541204 RSPRY1Q96DX4 576 aa12.07□□□□□ -0.48
RNF4-222ENST00000541204 DACH2Q96NX9 599 aa12.07□□□□□ -0.48
RNF4-222ENST00000541204 REEP1Q9H902 201 aa12.07□□□□□ -0.48
RNF4-222ENST00000541204 OSGIN1Q9UJX0 560 aa12.07□□□□□ -0.48
RNF4-222ENST00000541204 RPS6KA6Q9UK32 745 aa12.07□□□□□ -0.48
RNF4-222ENST00000541204 SGTAO43765 313 aa12.06□□□□□ -0.48
RNF4-222ENST00000541204 MAPK1P28482 360 aa12.06□□□□□ -0.48
RNF4-222ENST00000541204 MVKQ03426 396 aa12.06□□□□□ -0.48
RNF4-222ENST00000541204 CHIT1Q13231 466 aa12.06□□□□□ -0.48
RNF4-222ENST00000541204 UGT8Q16880 541 aa12.06□□□□□ -0.48
RNF4-222ENST00000541204 PROX2Q3B8N5 592 aa12.06□□□□□ -0.48
RNF4-222ENST00000541204 SYT12Q8IV01 421 aa12.06□□□□□ -0.48
RNF4-222ENST00000541204 RAVER1Q8IY67 606 aaKnown RBP12.06□□□□□ -0.48
RNF4-222ENST00000541204 ENTHD1Q8IYW4 607 aa12.06□□□□□ -0.48
RNF4-222ENST00000541204 MCFD2Q8NI22 146 aa12.06□□□□□ -0.48
RNF4-222ENST00000541204 DNASE1L2Q92874 299 aa12.06□□□□□ -0.48
RNF4-222ENST00000541204 NXPE3Q969Y0 559 aa12.06□□□□□ -0.48
RNF4-222ENST00000541204 MTERF1Q99551 399 aaKnown RBP12.06□□□□□ -0.48
RNF4-222ENST00000541204 CCNB1IP1Q9NPC3 277 aa12.06□□□□□ -0.48
RNF4-222ENST00000541204 SCHIP1Q9P0W5 487 aaPredicted RBP12.06□□□□□ -0.48
RNF4-222ENST00000541204 LINC01553A4QN01 128 aa12.06□□□□□ -0.48
RNF4-222ENST00000541204 MAGEB17A8MXT2 336 aa12.06□□□□□ -0.48
RNF4-222ENST00000541204 NUAK1O60285 661 aa12.06□□□□□ -0.48
RNF4-222ENST00000541204 EPN2O95208 641 aa12.06□□□□□ -0.48
RNF4-222ENST00000541204 VIPP01282 170 aa12.06□□□□□ -0.48
RNF4-222ENST00000541204 CYP17A1P05093 508 aa12.06□□□□□ -0.48
RNF4-222ENST00000541204 C8GP07360 202 aa12.06□□□□□ -0.48
RNF4-222ENST00000541204 CYP2A7P20853 494 aa12.06□□□□□ -0.48
RNF4-222ENST00000541204 DDX6P26196 483 aaKnown RBP eCLIP12.06□□□□□ -0.48
RNF4-222ENST00000541204 CD40LGP29965 261 aa12.06□□□□□ -0.48
RNF4-222ENST00000541204 LIPAP38571 399 aa12.06□□□□□ -0.48
RNF4-222ENST00000541204 BDKRB1P46663 353 aa12.06□□□□□ -0.48
RNF4-222ENST00000541204 SLC6A11P48066 632 aa12.06□□□□□ -0.48
RNF4-222ENST00000541204 SLC13A2Q13183 592 aa12.06□□□□□ -0.48
RNF4-222ENST00000541204 CAMK2GQ13555 558 aaPredicted RBP12.06□□□□□ -0.48
RNF4-222ENST00000541204 ZNF284Q2VY69 593 aa12.06□□□□□ -0.48
RNF4-222ENST00000541204 PRSS36Q5K4E3 855 aa12.06□□□□□ -0.48
RNF4-222ENST00000541204 GPR153Q6NV75 609 aa12.06□□□□□ -0.48
RNF4-222ENST00000541204 FBXO46Q6PJ61 603 aaPredicted RBP12.06□□□□□ -0.48
RNF4-222ENST00000541204 CYP2U1Q7Z449 544 aa12.06□□□□□ -0.48
RNF4-222ENST00000541204 FAM9CQ8IZT9 166 aa12.06□□□□□ -0.48
RNF4-222ENST00000541204 RASGEF1AQ8N9B8 481 aa12.06□□□□□ -0.48
RNF4-222ENST00000541204 RHOXF1Q8NHV9 184 aa12.06□□□□□ -0.48
RNF4-222ENST00000541204 ASZ1Q8WWH4 475 aa12.06□□□□□ -0.48
RNF4-222ENST00000541204 AP2M1Q96CW1 435 aa12.06□□□□□ -0.48
RNF4-222ENST00000541204 HHIPQ96QV1 700 aa12.06□□□□□ -0.48
RNF4-222ENST00000541204 KLHL25Q9H0H3 589 aa12.06□□□□□ -0.48
RNF4-222ENST00000541204 DCSTAMPQ9H295 470 aa12.06□□□□□ -0.48
RNF4-222ENST00000541204 ABCB10Q9NRK6 738 aa12.06□□□□□ -0.48
RNF4-222ENST00000541204 ZNF229Q9UJW7 825 aa12.06□□□□□ -0.48
RNF4-222ENST00000541204 FAM32AQ9Y421 112 aaKnown RBP12.06□□□□□ -0.48
RNF4-222ENST00000541204 HTR3EA5X5Y0 456 aa12.05□□□□□ -0.48
RNF4-222ENST00000541204 OTOL1A6NHN0 477 aaPredicted RBP12.05□□□□□ -0.48
RNF4-222ENST00000541204 WASH3PC4AMC7 463 aa12.05□□□□□ -0.48
RNF4-222ENST00000541204 YY2O15391 372 aa12.05□□□□□ -0.48
RNF4-222ENST00000541204 NUDT7P0C024 238 aa12.05□□□□□ -0.48
RNF4-222ENST00000541204 ADH5P11766 374 aa12.05□□□□□ -0.48
RNF4-222ENST00000541204 GPX2P18283 190 aa12.05□□□□□ -0.48
RNF4-222ENST00000541204 PDHA2P29803 388 aa12.05□□□□□ -0.48
RNF4-222ENST00000541204 AQP1P29972 269 aa12.05□□□□□ -0.48
RNF4-222ENST00000541204 C21orf33P30042 268 aaPredicted RBP12.05□□□□□ -0.48
RNF4-222ENST00000541204 CLK1P49759 484 aaKnown RBP12.05□□□□□ -0.48
RNF4-222ENST00000541204 WNT3P56703 355 aa12.05□□□□□ -0.48
RNF4-222ENST00000541204 MTAPQ13126 283 aa12.05□□□□□ -0.48
RNF4-222ENST00000541204 PPIGQ13427 754 aaKnown RBP eCLIP12.05□□□□□ -0.484e-10■■□□□ 12.4
RNF4-222ENST00000541204 ZNF805Q5CZA5 627 aa12.05□□□□□ -0.48
RNF4-222ENST00000541204 EEF1AKMT2Q5JPI9 291 aaKnown RBP12.05□□□□□ -0.48
RNF4-222ENST00000541204 FRG2Q64ET8 278 aa12.05□□□□□ -0.48
RNF4-222ENST00000541204 ADNP2Q6IQ32 1131 aa12.05□□□□□ -0.48
RNF4-222ENST00000541204 CBLL1Q75N03 491 aa12.05□□□□□ -0.48
RNF4-222ENST00000541204 EIF3MQ7L2H7 374 aaKnown RBP12.05□□□□□ -0.48
RNF4-222ENST00000541204 PARS2Q7L3T8 475 aaKnown RBP12.05□□□□□ -0.48
RNF4-222ENST00000541204 LRRC70Q7Z2Q7 622 aa12.05□□□□□ -0.48
RNF4-222ENST00000541204 KCNC2Q96PR1 638 aa12.05□□□□□ -0.48
RNF4-222ENST00000541204 FRG2BQ96QU4 278 aa12.05□□□□□ -0.48
RNF4-222ENST00000541204 ITPAQ9BY32 194 aa12.05□□□□□ -0.48
RNF4-222ENST00000541204 AMBNQ9NP70 447 aa12.05□□□□□ -0.48
RNF4-222ENST00000541204 WBP1LQ9NX94 342 aa12.05□□□□□ -0.48
RNF4-222ENST00000541204 TMED5Q9Y3A6 229 aa12.05□□□□□ -0.48
RNF4-222ENST00000541204 ZNF451Q9Y4E5 1061 aa12.05□□□□□ -0.48
RNF4-222ENST00000541204 CLDN24A6NM45 220 aa12.05□□□□□ -0.48
RNF4-222ENST00000541204 ARHGEF33A8MVX0 844 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms