RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 RNF111Q6ZNA4 994 aa11.48□□□□□ -0.57
CLIP1-208ENST00000537004 LILRA3Q8N6C8 439 aaPredicted RBP11.48□□□□□ -0.57
CLIP1-208ENST00000537004 PPFIBP2Q8ND30 876 aa11.48□□□□□ -0.57
CLIP1-208ENST00000537004 BHLHE22Q8NFJ8 381 aaPredicted RBP11.48□□□□□ -0.57
CLIP1-208ENST00000537004 WDR48Q8TAF3 677 aa11.48□□□□□ -0.57
CLIP1-208ENST00000537004 PROKR1Q8TCW9 393 aa11.48□□□□□ -0.57
CLIP1-208ENST00000537004 PYCR2Q96C36 320 aa11.48□□□□□ -0.57
CLIP1-208ENST00000537004 ASB9Q96DX5 294 aa11.48□□□□□ -0.57
CLIP1-208ENST00000537004 PPP3R2Q96LZ3 170 aa11.48□□□□□ -0.57
CLIP1-208ENST00000537004 ZCCHC2Q9C0B9 1178 aaKnown RBP11.48□□□□□ -0.57
CLIP1-208ENST00000537004 ASCL3Q9NQ33 180 aa11.48□□□□□ -0.57
CLIP1-208ENST00000537004 TMEM45AQ9NWC5 275 aa11.48□□□□□ -0.57
CLIP1-208ENST00000537004 TMEM181Q9P2C4 612 aa11.48□□□□□ -0.57
CLIP1-208ENST00000537004 ZNF490Q9ULM2 529 aaPredicted RBP11.48□□□□□ -0.57
CLIP1-208ENST00000537004 NUP214P35658 2090 aaPredicted RBP11.47□□□□□ -0.57
CLIP1-208ENST00000537004 IGHV1OR21-1A0A087WYE8 117 aa11.47□□□□□ -0.57
CLIP1-208ENST00000537004 FAM234BA2RU67 622 aa11.47□□□□□ -0.57
CLIP1-208ENST00000537004 PRORSD1PA6NEY8 169 aa11.47□□□□□ -0.57
CLIP1-208ENST00000537004 OR52A4PA6NMU1 304 aa11.47□□□□□ -0.57
CLIP1-208ENST00000537004 ARHGEF33A8MVX0 844 aa11.47□□□□□ -0.57
CLIP1-208ENST00000537004 FXYD1O00168 92 aa11.47□□□□□ -0.57
CLIP1-208ENST00000537004 SLC28A1O00337 649 aa11.47□□□□□ -0.57
CLIP1-208ENST00000537004 MAP3K7O43318 606 aa11.47□□□□□ -0.57
CLIP1-208ENST00000537004 F3P13726 295 aa11.47□□□□□ -0.57
CLIP1-208ENST00000537004 MAP4P27816 1152 aaKnown RBP11.47□□□□□ -0.57
CLIP1-208ENST00000537004 CSF2RBP32927 897 aa11.47□□□□□ -0.57
CLIP1-208ENST00000537004 EIF2S3P41091 472 aaKnown RBP11.47□□□□□ -0.57
CLIP1-208ENST00000537004 FASLGP48023 281 aa11.47□□□□□ -0.57
CLIP1-208ENST00000537004 ZFP36L1Q07352 338 aaKnown RBP11.47□□□□□ -0.57
CLIP1-208ENST00000537004 CPSF6Q16630 551 aaKnown RBP eCLIP11.47□□□□□ -0.57
CLIP1-208ENST00000537004 TBC1D25Q3MII6 688 aa11.47□□□□□ -0.57
CLIP1-208ENST00000537004 RFTN2Q52LD8 501 aaPredicted RBP11.47□□□□□ -0.57
CLIP1-208ENST00000537004 SGO1Q5FBB7 561 aa11.47□□□□□ -0.57
CLIP1-208ENST00000537004 PHF19Q5T6S3 580 aa11.47□□□□□ -0.57
CLIP1-208ENST00000537004 CYP20A1Q6UW02 462 aa11.47□□□□□ -0.57
CLIP1-208ENST00000537004 TRIM46Q7Z4K8 759 aa11.47□□□□□ -0.57
CLIP1-208ENST00000537004 SLITRK4Q8IW52 837 aa11.47□□□□□ -0.57
CLIP1-208ENST00000537004 SLC22A15Q8IZD6 547 aa11.47□□□□□ -0.57
CLIP1-208ENST00000537004 FGF11Q92914 225 aa11.47□□□□□ -0.57
CLIP1-208ENST00000537004 USP7Q93009 1102 aa11.47□□□□□ -0.57
CLIP1-208ENST00000537004 VPS33AQ96AX1 596 aa11.47□□□□□ -0.57
CLIP1-208ENST00000537004 FBXL8Q96CD0 374 aa11.47□□□□□ -0.57
CLIP1-208ENST00000537004 SLC46A1Q96NT5 459 aa11.47□□□□□ -0.57
CLIP1-208ENST00000537004 HOPXQ9BPY8 73 aaPredicted RBP11.47□□□□□ -0.57
CLIP1-208ENST00000537004 GPATCH1Q9BRR8 931 aaKnown RBP11.47□□□□□ -0.57
CLIP1-208ENST00000537004 ATG10Q9H0Y0 220 aa11.47□□□□□ -0.57
CLIP1-208ENST00000537004 DNAJC11Q9NVH1 559 aa11.47□□□□□ -0.57
CLIP1-208ENST00000537004 GID8Q9NWU2 228 aa11.47□□□□□ -0.57
CLIP1-208ENST00000537004 CD300AQ9UGN4 299 aa11.47□□□□□ -0.57
CLIP1-208ENST00000537004 SLC22A14Q9Y267 594 aa11.47□□□□□ -0.57
CLIP1-208ENST00000537004 WDR37Q9Y2I8 494 aa11.47□□□□□ -0.57
CLIP1-208ENST00000537004 POLR3HQ9Y535 204 aaPredicted RBP11.47□□□□□ -0.57
CLIP1-208ENST00000537004 PTPRQQ9UMZ3 2332 aa11.47□□□□□ -0.57
CLIP1-208ENST00000537004 ASPDHA6ND91 283 aa11.47□□□□□ -0.57
CLIP1-208ENST00000537004 CCDC154A6NI56 674 aa11.47□□□□□ -0.57
CLIP1-208ENST00000537004 PRR19A6NJB7 356 aa11.47□□□□□ -0.57
CLIP1-208ENST00000537004 PDZK1P1A8MUH7 402 aa11.47□□□□□ -0.57
CLIP1-208ENST00000537004 GPR89AB7ZAQ6 455 aa11.47□□□□□ -0.57
CLIP1-208ENST00000537004 EEDO75530 441 aaKnown RBP11.47□□□□□ -0.57
CLIP1-208ENST00000537004 CPNE6O95741 557 aa11.47□□□□□ -0.57
CLIP1-208ENST00000537004 KRT6AP02538 564 aa11.47□□□□□ -0.57
CLIP1-208ENST00000537004 KRT6BP04259 564 aa11.47□□□□□ -0.57
CLIP1-208ENST00000537004 GPR89BP0CG08 455 aa11.47□□□□□ -0.57
CLIP1-208ENST00000537004 G6PDP11413 515 aa11.47□□□□□ -0.57
CLIP1-208ENST00000537004 SLC2A4P14672 509 aa11.47□□□□□ -0.57
CLIP1-208ENST00000537004 ITIH1P19827 911 aa11.47□□□□□ -0.57
CLIP1-208ENST00000537004 IL12AP29459 219 aa11.47□□□□□ -0.57
CLIP1-208ENST00000537004 KRT6CP48668 564 aa11.47□□□□□ -0.57
CLIP1-208ENST00000537004 PPM1FP49593 454 aaPredicted RBP11.47□□□□□ -0.57
CLIP1-208ENST00000537004 RPL38P63173 70 aaKnown RBP11.47□□□□□ -0.57
CLIP1-208ENST00000537004 MRPS22P82650 360 aaKnown RBP11.47□□□□□ -0.57
CLIP1-208ENST00000537004 HMGCS1Q01581 520 aa11.47□□□□□ -0.57
CLIP1-208ENST00000537004 PRKG2Q13237 762 aa11.47□□□□□ -0.57
CLIP1-208ENST00000537004 NR1D2Q14995 579 aa11.47□□□□□ -0.57
CLIP1-208ENST00000537004 GGTA1PQ4G0N0 100 aa11.47□□□□□ -0.57
CLIP1-208ENST00000537004 ZNF658BQ4V348 819 aaPredicted RBP11.47□□□□□ -0.57
CLIP1-208ENST00000537004 BCL7AQ4VC05 210 aa11.47□□□□□ -0.57
CLIP1-208ENST00000537004 EEF1AKMT2Q5JPI9 291 aaKnown RBP11.47□□□□□ -0.57
CLIP1-208ENST00000537004 CHCHD2P9Q5T1J5 151 aaPredicted RBP11.47□□□□□ -0.57
CLIP1-208ENST00000537004 IL23RQ5VWK5 629 aa11.47□□□□□ -0.57
CLIP1-208ENST00000537004 PRMT9Q6P2P2 845 aa11.47□□□□□ -0.57
CLIP1-208ENST00000537004 FAM83HQ6ZRV2 1179 aaPredicted RBP11.47□□□□□ -0.57
CLIP1-208ENST00000537004 RAB11FIP2Q7L804 512 aa11.47□□□□□ -0.57
CLIP1-208ENST00000537004 SLC38A3Q99624 504 aa11.47□□□□□ -0.57
CLIP1-208ENST00000537004 ZNF624Q9P2J8 865 aaPredicted RBP11.47□□□□□ -0.57
CLIP1-208ENST00000537004 CPNE7Q9UBL6 633 aa11.47□□□□□ -0.57
CLIP1-208ENST00000537004 KCNE1BA0A087WTH5 132 aa11.46□□□□□ -0.57
CLIP1-208ENST00000537004 POP7O75817 140 aaKnown RBP11.46□□□□□ -0.57
CLIP1-208ENST00000537004 TNFSF15O95150 251 aa11.46□□□□□ -0.57
CLIP1-208ENST00000537004 CATP04040 527 aaKnown RBP11.46□□□□□ -0.57
CLIP1-208ENST00000537004 ATP6V1C1P21283 382 aa11.46□□□□□ -0.57
CLIP1-208ENST00000537004 PDHA2P29803 388 aa11.46□□□□□ -0.57
CLIP1-208ENST00000537004 SLC19A1P41440 591 aa11.46□□□□□ -0.57
CLIP1-208ENST00000537004 GPR3P46089 330 aa11.46□□□□□ -0.57
CLIP1-208ENST00000537004 MAD2L1Q13257 205 aaPredicted RBP11.46□□□□□ -0.57
CLIP1-208ENST00000537004 GTF2H3Q13889 308 aa11.46□□□□□ -0.57
CLIP1-208ENST00000537004 CAPRIN1Q14444 709 aaKnown RBP11.46□□□□□ -0.57
CLIP1-208ENST00000537004 NFE2L1Q14494 772 aa11.46□□□□□ -0.57
CLIP1-208ENST00000537004 CLCA4Q14CN2 919 aa11.46□□□□□ -0.57
CLIP1-208ENST00000537004 C16orf72Q14CZ0 275 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms