RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 NUDT8Q8WV74 236 aa13.51□□□□□ -0.25
LIG1-203ENST00000536218 FBXW5Q969U6 566 aa13.51□□□□□ -0.25
LIG1-203ENST00000536218 TRAF4Q9BUZ4 470 aaPredicted RBP13.51□□□□□ -0.25
LIG1-203ENST00000536218 LEF1Q9UJU2 399 aaPredicted RBP13.51□□□□□ -0.25
LIG1-203ENST00000536218 PCDHGB2Q9Y5G2 931 aa13.51□□□□□ -0.25
LIG1-203ENST00000536218 CDH23Q9H251 3354 aa13.5□□□□□ -0.25
LIG1-203ENST00000536218 NPEPPSL1A6NEC2 478 aa13.5□□□□□ -0.25
LIG1-203ENST00000536218 MYO1GB0I1T2 1018 aa13.5□□□□□ -0.25
LIG1-203ENST00000536218 CCL16O15467 120 aa13.5□□□□□ -0.25
LIG1-203ENST00000536218 TLL1O43897 1013 aa13.5□□□□□ -0.25
LIG1-203ENST00000536218 RPS3P23396 243 aaKnown RBP eCLIP13.5□□□□□ -0.25
LIG1-203ENST00000536218 FAM151BQ6UXP7 276 aa13.5□□□□□ -0.25
LIG1-203ENST00000536218 CYP4Z2PQ8N1L4 340 aa13.5□□□□□ -0.25
LIG1-203ENST00000536218 SVOPLQ8N434 492 aa13.5□□□□□ -0.25
LIG1-203ENST00000536218 COQ8BQ96D53 544 aa13.5□□□□□ -0.25
LIG1-203ENST00000536218 HCFC1R1Q9NWW0 138 aa13.5□□□□□ -0.25
LIG1-203ENST00000536218 POLG2Q9UHN1 485 aa13.5□□□□□ -0.25
LIG1-203ENST00000536218 LSM7Q9UK45 103 aaKnown RBP13.5□□□□□ -0.25
LIG1-203ENST00000536218 MED16Q9Y2X0 877 aa13.5□□□□□ -0.25
LIG1-203ENST00000536218 TOR1AO14656 332 aa13.5□□□□□ -0.25
LIG1-203ENST00000536218 UGT2B17O75795 530 aa13.5□□□□□ -0.25
LIG1-203ENST00000536218 TRAPPC2P0DI81 140 aa13.5□□□□□ -0.25
LIG1-203ENST00000536218 TRAPPC2BP0DI82 140 aa13.5□□□□□ -0.25
LIG1-203ENST00000536218 CBX5P45973 191 aa13.5□□□□□ -0.25
LIG1-203ENST00000536218 UGT2B15P54855 530 aa13.5□□□□□ -0.25
LIG1-203ENST00000536218 RAB44Q7Z6P3 723 aaPredicted RBP13.5□□□□□ -0.25
LIG1-203ENST00000536218 CCDC190Q86UF4 302 aa13.5□□□□□ -0.25
LIG1-203ENST00000536218 ADHFE1Q8IWW8 467 aa13.5□□□□□ -0.25
LIG1-203ENST00000536218 ZNF566Q969W8 418 aa13.5□□□□□ -0.25
LIG1-203ENST00000536218 EID2BQ96D98 161 aa13.5□□□□□ -0.25
LIG1-203ENST00000536218 SIPA1Q96FS4 1042 aa13.5□□□□□ -0.25
LIG1-203ENST00000536218 ABCG8Q9H221 673 aa13.5□□□□□ -0.25
LIG1-203ENST00000536218 FARSBQ9NSD9 589 aaKnown RBP13.5□□□□□ -0.25
LIG1-203ENST00000536218 PKP3Q9Y446 797 aa13.5□□□□□ -0.25
LIG1-203ENST00000536218 A0A1B0GTL3 188 aa13.49□□□□□ -0.25
LIG1-203ENST00000536218 M0R082 166 aa13.49□□□□□ -0.25
LIG1-203ENST00000536218 WISP3O95389 354 aaPredicted RBP13.49□□□□□ -0.25
LIG1-203ENST00000536218 C8AP07357 584 aa13.49□□□□□ -0.25
LIG1-203ENST00000536218 MTHFD2P13995 350 aa13.49□□□□□ -0.25
LIG1-203ENST00000536218 EPHA2P29317 976 aa13.49□□□□□ -0.25
LIG1-203ENST00000536218 RPS5P46782 204 aaKnown RBP13.49□□□□□ -0.25
LIG1-203ENST00000536218 AGTR2P50052 363 aa13.49□□□□□ -0.25
LIG1-203ENST00000536218 ETV1P50549 477 aa13.49□□□□□ -0.25
LIG1-203ENST00000536218 ARHGDIAP52565 204 aa13.49□□□□□ -0.25
LIG1-203ENST00000536218 HERVK_113P63132 956 aa13.49□□□□□ -0.25
LIG1-203ENST00000536218 HOXC5Q00444 222 aa13.49□□□□□ -0.25
LIG1-203ENST00000536218 MFSD13AQ14CX5 517 aa13.49□□□□□ -0.25
LIG1-203ENST00000536218 ARMC12Q5T9G4 340 aa13.49□□□□□ -0.25
LIG1-203ENST00000536218 CYP4Z1Q86W10 505 aa13.49□□□□□ -0.25
LIG1-203ENST00000536218 TIGD4Q8IY51 512 aa13.49□□□□□ -0.25
LIG1-203ENST00000536218 CMTM8Q8IZV2 173 aa13.49□□□□□ -0.25
LIG1-203ENST00000536218 EEF1AKMT1Q8WVE0 214 aa13.49□□□□□ -0.25
LIG1-203ENST00000536218 COPS4Q9BT78 406 aa13.49□□□□□ -0.25
LIG1-203ENST00000536218 THUMPD3Q9BV44 507 aaKnown RBP13.49□□□□□ -0.25
LIG1-203ENST00000536218 ERVK-6Q9BXR3 956 aa13.49□□□□□ -0.25
LIG1-203ENST00000536218 SLC22A4Q9H015 551 aa13.49□□□□□ -0.25
LIG1-203ENST00000536218 EXOSC4Q9NPD3 245 aaKnown RBP13.49□□□□□ -0.25
LIG1-203ENST00000536218 TMEFF2Q9UIK5 374 aaPredicted RBP13.49□□□□□ -0.25
LIG1-203ENST00000536218 COMMD10Q9Y6G5 202 aa13.49□□□□□ -0.25
LIG1-203ENST00000536218 AZIN1O14977 448 aa13.49□□□□□ -0.25
LIG1-203ENST00000536218 GREM1O60565 184 aa13.49□□□□□ -0.25
LIG1-203ENST00000536218 SLC22A3O75751 556 aa13.49□□□□□ -0.25
LIG1-203ENST00000536218 PKMP14618 531 aaKnown RBP13.49□□□□□ -0.25
LIG1-203ENST00000536218 CD70P32970 193 aa13.49□□□□□ -0.25
LIG1-203ENST00000536218 CSTF2P33240 577 aaKnown RBP eCLIP13.49□□□□□ -0.25
LIG1-203ENST00000536218 PRIM2P49643 509 aa13.49□□□□□ -0.25
LIG1-203ENST00000536218 STK19P49842 368 aaPredicted RBP13.49□□□□□ -0.25
LIG1-203ENST00000536218 GBX1Q14549 363 aa13.49□□□□□ -0.25
LIG1-203ENST00000536218 TYW3Q6IPR3 259 aaKnown RBP13.49□□□□□ -0.25
LIG1-203ENST00000536218 OR5K1Q8NHB7 308 aa13.49□□□□□ -0.25
LIG1-203ENST00000536218 MYLIPQ8WY64 445 aa13.49□□□□□ -0.25
LIG1-203ENST00000536218 GFM1Q96RP9 751 aaKnown RBP13.49□□□□□ -0.25
LIG1-203ENST00000536218 BARD1Q99728 777 aaKnown RBP13.49□□□□□ -0.25
LIG1-203ENST00000536218 PPIL3Q9H2H8 161 aaKnown RBP13.49□□□□□ -0.25
LIG1-203ENST00000536218 CCNB1IP1Q9NPC3 277 aa13.49□□□□□ -0.25
LIG1-203ENST00000536218 SAGE1Q9NXZ1 904 aa13.49□□□□□ -0.25
LIG1-203ENST00000536218 SLC16A6O15403 523 aa13.48□□□□□ -0.25
LIG1-203ENST00000536218 JUNDP17535 347 aa13.48□□□□□ -0.25
LIG1-203ENST00000536218 TIE1P35590 1138 aa13.48□□□□□ -0.25
LIG1-203ENST00000536218 POLR2JP52435 117 aaKnown RBP13.48□□□□□ -0.25
LIG1-203ENST00000536218 QPRTQ15274 297 aa13.48□□□□□ -0.25
LIG1-203ENST00000536218 AAK1Q2M2I8 961 aa13.48□□□□□ -0.25
LIG1-203ENST00000536218 CYP27C1Q4G0S4 372 aa13.48□□□□□ -0.25
LIG1-203ENST00000536218 P3H2Q8IVL5 708 aa13.48□□□□□ -0.25
LIG1-203ENST00000536218 FBXO39Q8N4B4 442 aa13.48□□□□□ -0.25
LIG1-203ENST00000536218 ENKURQ8TC29 256 aa13.48□□□□□ -0.25
LIG1-203ENST00000536218 GPR151Q8TDV0 419 aa13.48□□□□□ -0.25
LIG1-203ENST00000536218 ASIC4Q96FT7 647 aa13.48□□□□□ -0.25
LIG1-203ENST00000536218 DYRK4Q9NR20 520 aa13.48□□□□□ -0.25
LIG1-203ENST00000536218 ABCB8Q9NUT2 735 aa13.48□□□□□ -0.25
LIG1-203ENST00000536218 CPNE7Q9UBL6 633 aa13.48□□□□□ -0.25
LIG1-203ENST00000536218 OR51B4Q9Y5P0 310 aa13.48□□□□□ -0.25
LIG1-203ENST00000536218 A0A0B4J293 547 aa13.48□□□□□ -0.25
LIG1-203ENST00000536218 EFCAB10A6NFE3 127 aa13.48□□□□□ -0.25
LIG1-203ENST00000536218 KIAA0513O60268 411 aa13.48□□□□□ -0.25
LIG1-203ENST00000536218 VPS26AO75436 327 aa13.48□□□□□ -0.25
LIG1-203ENST00000536218 ECI2O75521 394 aa13.48□□□□□ -0.25
LIG1-203ENST00000536218 CDK14O94921 469 aa13.48□□□□□ -0.25
LIG1-203ENST00000536218 CTSOP43234 321 aaPredicted RBP13.48□□□□□ -0.25
LIG1-203ENST00000536218 EMX2Q04743 252 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms