RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 C4orf51C9J302 202 aa13.07□□□□□ -0.32
CD44-224ENST00000526669 H3BMH7 237 aa13.07□□□□□ -0.32
CD44-224ENST00000526669 SAP18O00422 153 aaKnown RBP13.07□□□□□ -0.32
CD44-224ENST00000526669 ZSCAN9O15535 394 aaPredicted RBP13.07□□□□□ -0.32
CD44-224ENST00000526669 ZNF749O43361 778 aa13.07□□□□□ -0.32
CD44-224ENST00000526669 SRPX2O60687 465 aaPredicted RBP13.07□□□□□ -0.32
CD44-224ENST00000526669 KIAA0754O94854 1291 aa13.07□□□□□ -0.32
CD44-224ENST00000526669 TNFSF15O95150 251 aa13.07□□□□□ -0.32
CD44-224ENST00000526669 ETHE1O95571 254 aa13.07□□□□□ -0.32
CD44-224ENST00000526669 TBX6O95947 436 aaPredicted RBP13.07□□□□□ -0.32
CD44-224ENST00000526669 KRT6AP02538 564 aa13.07□□□□□ -0.32
CD44-224ENST00000526669 KRT6BP04259 564 aa13.07□□□□□ -0.32
CD44-224ENST00000526669 NTRK1P04629 796 aa13.07□□□□□ -0.32
CD44-224ENST00000526669 SLC35G6P0C7Q6 338 aa13.07□□□□□ -0.32
CD44-224ENST00000526669 ZNF888P0CJ79 500 aaPredicted RBP13.07□□□□□ -0.32
CD44-224ENST00000526669 FGF5P12034 268 aa13.07□□□□□ -0.32
CD44-224ENST00000526669 ZNF28P17035 718 aa13.07□□□□□ -0.32
CD44-224ENST00000526669 HNRNPH1P31943 449 aaKnown RBP13.07□□□□□ -0.32
CD44-224ENST00000526669 MDH1P40925 334 aaKnown RBP13.07□□□□□ -0.32
CD44-224ENST00000526669 KRT6CP48668 564 aa13.07□□□□□ -0.32
CD44-224ENST00000526669 PHEXP78562 749 aa13.07□□□□□ -0.32
CD44-224ENST00000526669 OCRLQ01968 901 aa13.07□□□□□ -0.32
CD44-224ENST00000526669 RELAQ04206 551 aa13.07□□□□□ -0.32
CD44-224ENST00000526669 RGS1Q08116 209 aa13.07□□□□□ -0.32
CD44-224ENST00000526669 GALNT1Q10472 559 aaPredicted RBP13.07□□□□□ -0.32
CD44-224ENST00000526669 HYAL2Q12891 473 aa13.07□□□□□ -0.32
CD44-224ENST00000526669 EIF3IQ13347 325 aaKnown RBP13.07□□□□□ -0.32
CD44-224ENST00000526669 ABRAXAS2Q15018 415 aa13.07□□□□□ -0.32
CD44-224ENST00000526669 PDCD2Q16342 344 aaPredicted RBP13.07□□□□□ -0.32
CD44-224ENST00000526669 PRTGQ2VWP7 1150 aa13.07□□□□□ -0.32
CD44-224ENST00000526669 TCTE1Q5JU00 501 aa13.07□□□□□ -0.32
CD44-224ENST00000526669 KANK2Q63ZY3 851 aa13.07□□□□□ -0.32
CD44-224ENST00000526669 CEACAM20Q6UY09 585 aa13.07□□□□□ -0.32
CD44-224ENST00000526669 TRPV3Q8NET8 790 aa13.07□□□□□ -0.32
CD44-224ENST00000526669 TTLQ8NG68 377 aa13.07□□□□□ -0.32
CD44-224ENST00000526669 NT5CQ8TCD5 201 aa13.07□□□□□ -0.32
CD44-224ENST00000526669 TWIST2Q8WVJ9 160 aa13.07□□□□□ -0.32
CD44-224ENST00000526669 C10orf90Q96M02 699 aa13.07□□□□□ -0.32
CD44-224ENST00000526669 ZNF285Q96NJ3 590 aa13.07□□□□□ -0.32
CD44-224ENST00000526669 F2RL3Q96RI0 385 aa13.07□□□□□ -0.32
CD44-224ENST00000526669 TAAR9Q96RI9 348 aa13.07□□□□□ -0.32
CD44-224ENST00000526669 MS4A8Q9BY19 250 aa13.07□□□□□ -0.32
CD44-224ENST00000526669 NLNQ9BYT8 704 aa13.07□□□□□ -0.32
CD44-224ENST00000526669 SLC7A5P2Q9GIP4 190 aa13.07□□□□□ -0.32
CD44-224ENST00000526669 ILKAPQ9H0C8 392 aaPredicted RBP13.07□□□□□ -0.32
CD44-224ENST00000526669 FBXO8Q9NRD0 319 aa13.07□□□□□ -0.32
CD44-224ENST00000526669 FAM53CQ9NYF3 392 aa13.07□□□□□ -0.32
CD44-224ENST00000526669 DHCR7Q9UBM7 475 aaKnown RBP13.07□□□□□ -0.32
CD44-224ENST00000526669 NDOR1Q9UHB4 597 aa13.07□□□□□ -0.32
CD44-224ENST00000526669 C9orf172C9J069 976 aa13.06□□□□□ -0.32
CD44-224ENST00000526669 KLF11O14901 512 aa13.06□□□□□ -0.32
CD44-224ENST00000526669 ULK1O75385 1050 aa13.06□□□□□ -0.32
CD44-224ENST00000526669 CLEC3AO75596 197 aa13.06□□□□□ -0.32
CD44-224ENST00000526669 SCRG1O75711 98 aa13.06□□□□□ -0.32
CD44-224ENST00000526669 MSL3P1P0C860 447 aa13.06□□□□□ -0.32
CD44-224ENST00000526669 RPL14P50914 215 aaKnown RBP13.06□□□□□ -0.32
CD44-224ENST00000526669 RAB8AP61006 207 aa13.06□□□□□ -0.32
CD44-224ENST00000526669 BTKQ06187 659 aa13.06□□□□□ -0.32
CD44-224ENST00000526669 DCAF12Q5T6F0 453 aa13.06□□□□□ -0.32
CD44-224ENST00000526669 C1orf189Q5VU69 101 aa13.06□□□□□ -0.32
CD44-224ENST00000526669 TTLL10Q6ZVT0 673 aa13.06□□□□□ -0.32
CD44-224ENST00000526669 PRSS41Q7RTY9 318 aa13.06□□□□□ -0.32
CD44-224ENST00000526669 DDIASQ8IXT1 998 aa13.06□□□□□ -0.32
CD44-224ENST00000526669 CLYBLQ8N0X4 340 aa13.06□□□□□ -0.32
CD44-224ENST00000526669 THOC1Q96FV9 657 aaKnown RBP13.06□□□□□ -0.32
CD44-224ENST00000526669 TUBB1Q9H4B7 451 aa13.06□□□□□ -0.32
CD44-224ENST00000526669 ACTR5Q9H9F9 607 aaPredicted RBP13.06□□□□□ -0.32
CD44-224ENST00000526669 POLR1BQ9H9Y6 1135 aa13.06□□□□□ -0.32
CD44-224ENST00000526669 CUTCQ9NTM9 273 aa13.06□□□□□ -0.32
CD44-224ENST00000526669 FOXJ2Q9P0K8 574 aa13.06□□□□□ -0.32
CD44-224ENST00000526669 SLC12A4Q9UP95 1085 aa13.06□□□□□ -0.32
CD44-224ENST00000526669 CACNA1AO00555 2505 aa13.06□□□□□ -0.32
CD44-224ENST00000526669 ACACAQ13085 2346 aa13.05□□□□□ -0.32
CD44-224ENST00000526669 WDFY3Q8IZQ1 3526 aa13.05□□□□□ -0.32
CD44-224ENST00000526669 TEX51A0A1B0GUA7 166 aa13.05□□□□□ -0.32
CD44-224ENST00000526669 HYKKA2RU49 373 aa13.05□□□□□ -0.32
CD44-224ENST00000526669 ZNF860A6NHJ4 632 aa13.05□□□□□ -0.32
CD44-224ENST00000526669 RTCAO00442 366 aaKnown RBP13.05□□□□□ -0.32
CD44-224ENST00000526669 PIP5K1BO14986 540 aa13.05□□□□□ -0.32
CD44-224ENST00000526669 ERI3O43414 337 aaKnown RBP13.05□□□□□ -0.32
CD44-224ENST00000526669 CHEK2O96017 543 aa13.05□□□□□ -0.32
CD44-224ENST00000526669 JUNP05412 331 aaKnown RBP13.05□□□□□ -0.32
CD44-224ENST00000526669 SERPINA6P08185 405 aa13.05□□□□□ -0.32
CD44-224ENST00000526669 LINC00032P0C843 101 aa13.05□□□□□ -0.32
CD44-224ENST00000526669 IL1RNP18510 177 aa13.05□□□□□ -0.32
CD44-224ENST00000526669 ALAS2P22557 587 aa13.05□□□□□ -0.32
CD44-224ENST00000526669 PIK3CBP42338 1070 aa13.05□□□□□ -0.32
CD44-224ENST00000526669 RAB15P59190 212 aa13.05□□□□□ -0.32
CD44-224ENST00000526669 HMGCS1Q01581 520 aa13.05□□□□□ -0.32
CD44-224ENST00000526669 CAMK2BQ13554 666 aa13.05□□□□□ -0.32
CD44-224ENST00000526669 PWP1Q13610 501 aa13.05□□□□□ -0.32
CD44-224ENST00000526669 IL11RAQ14626 422 aa13.05□□□□□ -0.32
CD44-224ENST00000526669 GRM7Q14831 915 aa13.05□□□□□ -0.32
CD44-224ENST00000526669 IMPG1Q17R60 797 aa13.05□□□□□ -0.32
CD44-224ENST00000526669 TLDC1Q6P9B6 456 aa13.05□□□□□ -0.32
CD44-224ENST00000526669 CYB5D1Q6P9G0 228 aa13.05□□□□□ -0.32
CD44-224ENST00000526669 CRLF3Q8IUI8 442 aa13.05□□□□□ -0.32
CD44-224ENST00000526669 OR8K5Q8NH50 307 aa13.05□□□□□ -0.32
CD44-224ENST00000526669 UTP15Q8TED0 518 aaKnown RBP13.05□□□□□ -0.32
CD44-224ENST00000526669 CLIP3Q96DZ5 547 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms