RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 DUX1O43812 170 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 DFNA5O60443 496 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 CCNKO75909 580 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 UBXN7O94888 489 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 ZIC2O95409 532 aaPredicted RBP7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 KRT6AP02538 564 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 KRT6BP04259 564 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 SNRPAP09012 282 aaKnown RBP7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 GLB1P16278 677 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 JAK1P23458 1154 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 SERPINB1P30740 379 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 SLC34A1Q06495 639 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 PCID2Q5JVF3 399 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 TMEM164Q5U3C3 297 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 C1orf146Q5VVC0 180 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 UNC5AQ6ZN44 842 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 ZNF704Q6ZNC4 412 aaPredicted RBP7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 LUZP2Q86TE4 346 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 SLC9B2Q86UD5 537 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 IQCHQ86VS3 1027 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 KCNMB4Q86W47 210 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 OR13J1Q8NGT2 312 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 GRK7Q8WTQ7 553 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 GPR21Q99679 349 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 PCED1AQ9H1Q7 454 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 DHCR7Q9UBM7 475 aaKnown RBP7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 MAN2B2Q9Y2E5 1009 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 MRPS18BQ9Y676 258 aaKnown RBP7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 SPG11Q96JI7 2443 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 TTLL8A6PVC2 850 aa7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 ERI2A8K979 691 aaKnown RBP7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 TNFRSF21O75509 655 aa7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 ZC3H12BQ5HYM0 836 aaKnown RBP7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 ZNF425Q6IV72 752 aa7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 DCP2Q8IU60 420 aaKnown RBP7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 AVL9Q8NBF6 648 aa7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 TTLQ8NG68 377 aa7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 SVIPQ8NHG7 77 aa7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 STYXQ8WUJ0 223 aa7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 CMTM3Q96MX0 182 aa7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 LRRC37BQ96QE4 947 aa7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 ULBP3Q9BZM4 244 aa7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 STRADBQ9C0K7 418 aa7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 PCDHB11Q9Y5F2 797 aa7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 BTNL10A8MVZ5 291 aa7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 C2orf74A8MZ97 194 aa7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 BTN3A3O00478 584 aa7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 RGS5O15539 181 aa7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 RRP8O43159 456 aaKnown RBP7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 SULT1B1O43704 296 aa7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 PROCP04070 461 aa7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 SLC5A2P31639 672 aa7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 CSF2RBP32927 897 aa7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 TSPAN7P41732 249 aa7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 CACNG1Q06432 222 aa7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 DDX39BQ13838 428 aaKnown RBP7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 BCL2A1Q16548 175 aa7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 SGCAQ16586 387 aa7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 UBAP2Q5T6F2 1119 aaKnown RBP7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 MROH9Q5TGP6 573 aa7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 MRNIPQ6NTE8 343 aa7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 SPRED1Q7Z699 444 aa7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 PIP4P1Q86T03 277 aa7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 SLC51BQ86UW2 128 aa7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 PTRH1Q86Y79 214 aaKnown RBP7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 CADM2Q8N3J6 435 aa7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 POU5F2Q8N7G0 328 aa7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 DMRTB1Q96MA1 342 aa7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 DHRS9Q9BPW9 319 aa7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 TRABDQ9H4I3 376 aa7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 TCF7L2Q9NQB0 619 aa7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 EVA1BQ9NVM1 165 aa7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 FOXJ2Q9P0K8 574 aa7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 BOLA1Q9Y3E2 137 aa7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 PIPSLA2A3N6 862 aa7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 OR2W5A6NFC9 320 aa7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 PRMT5O14744 637 aaPredicted RBP7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 ALOX12BO75342 701 aa7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 CKMT1AP12532 417 aa7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 PAMP19021 973 aa7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 P2RX3P56373 397 aa7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 ERVK-8P63133 956 aa7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 OCA2Q04671 838 aa7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 HYAL2Q12891 473 aa7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 ZNF124Q15973 351 aa7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 RPE65Q16518 533 aa7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 NADK2Q4G0N4 442 aa7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 TMEM126BQ8IUX1 230 aa7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 PPIL6Q8IXY8 311 aa7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 AGGF1Q8N302 714 aaeCLIP7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 AGR3Q8TD06 166 aa7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 AENQ8WTP8 325 aaKnown RBP7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 SLC9A6Q92581 669 aa7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 ZDHHC3Q9NYG2 299 aa7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 LAMP5Q9UJQ1 280 aa7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 SLC17A4Q9Y2C5 497 aa7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 PSAT1Q9Y617 370 aa7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 LRRK1Q38SD2 2015 aa7.6□□□□□ -1.19
LIMCH1-219ENST00000514096 KIAA1549LQ6ZVL6 1849 aa7.59□□□□□ -1.19
LIMCH1-219ENST00000514096 IGHV1OR21-1A0A087WYE8 117 aa7.59□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms