RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 NT5CQ8TCD5 201 aa28.21■■■□□ 2.11
LIMCH1-211ENST00000509638 FRG2BQ96QU4 278 aa28.21■■■□□ 2.11
LIMCH1-211ENST00000509638 ELOVL6Q9H5J4 265 aa28.21■■■□□ 2.11
LIMCH1-211ENST00000509638 CUTCQ9NTM9 273 aa28.21■■■□□ 2.11
LIMCH1-211ENST00000509638 DHCR7Q9UBM7 475 aaKnown RBP28.21■■■□□ 2.11
LIMCH1-211ENST00000509638 SEC16AO15027 2179 aa28.21■■■□□ 2.11
LIMCH1-211ENST00000509638 TMEM114B3SHH9 223 aa28.2■■■□□ 2.11
LIMCH1-211ENST00000509638 CRCPO75575 148 aa28.2■■■□□ 2.11
LIMCH1-211ENST00000509638 MED26O95402 600 aa28.2■■■□□ 2.11
LIMCH1-211ENST00000509638 HMOX2P30519 316 aa28.2■■■□□ 2.11
LIMCH1-211ENST00000509638 SERPINB1P30740 379 aa28.2■■■□□ 2.11
LIMCH1-211ENST00000509638 IFT88Q13099 833 aa28.2■■■□□ 2.11
LIMCH1-211ENST00000509638 ARHGEF39Q8N4T4 335 aa28.2■■■□□ 2.11
LIMCH1-211ENST00000509638 SLC38A9Q8NBW4 561 aa28.2■■■□□ 2.11
LIMCH1-211ENST00000509638 METTL6Q8TCB7 284 aa28.2■■■□□ 2.11
LIMCH1-211ENST00000509638 ZNF473Q8WTR7 871 aaKnown RBP28.2■■■□□ 2.11
LIMCH1-211ENST00000509638 CLIP3Q96DZ5 547 aa28.2■■■□□ 2.11
LIMCH1-211ENST00000509638 EML4Q9HC35 981 aaKnown RBP28.2■■■□□ 2.11
LIMCH1-211ENST00000509638 DMRT3Q9NQL9 472 aa28.2■■■□□ 2.11
LIMCH1-211ENST00000509638 INTS9Q9NV88 658 aaKnown RBP28.2■■■□□ 2.11
LIMCH1-211ENST00000509638 SNX6Q9UNH7 406 aa28.2■■■□□ 2.11
LIMCH1-211ENST00000509638 TSC22D4Q9Y3Q8 395 aa28.2■■■□□ 2.11
LIMCH1-211ENST00000509638 LYPLA1O75608 230 aaPredicted RBP28.2■■■□□ 2.1
LIMCH1-211ENST00000509638 HSPA4LO95757 839 aa28.2■■■□□ 2.1
LIMCH1-211ENST00000509638 SERPINA6P08185 405 aa28.2■■■□□ 2.1
LIMCH1-211ENST00000509638 ATP1A2P50993 1020 aa28.2■■■□□ 2.1
LIMCH1-211ENST00000509638 NEK2P51955 445 aa28.2■■■□□ 2.1
LIMCH1-211ENST00000509638 FOXA1P55317 472 aa28.2■■■□□ 2.1
LIMCH1-211ENST00000509638 GALNT1Q10472 559 aaPredicted RBP28.2■■■□□ 2.1
LIMCH1-211ENST00000509638 HYAL2Q12891 473 aa28.2■■■□□ 2.1
LIMCH1-211ENST00000509638 TMEM214Q6NUQ4 689 aaKnown RBP28.2■■■□□ 2.1
LIMCH1-211ENST00000509638 ATG14Q6ZNE5 492 aa28.2■■■□□ 2.1
LIMCH1-211ENST00000509638 DYDC1Q8WWB3 177 aa28.2■■■□□ 2.1
LIMCH1-211ENST00000509638 SLC6A16Q9GZN6 736 aa28.2■■■□□ 2.1
LIMCH1-211ENST00000509638 TXLNGQ9NUQ3 528 aa28.2■■■□□ 2.1
LIMCH1-211ENST00000509638 MRPS2Q9Y399 296 aaKnown RBP28.2■■■□□ 2.1
LIMCH1-211ENST00000509638 IGF2RP11717 2491 aa28.2■■■□□ 2.1
LIMCH1-211ENST00000509638 ITM2AO43736 263 aa28.19■■■□□ 2.1
LIMCH1-211ENST00000509638 TBX6O95947 436 aaPredicted RBP28.19■■■□□ 2.1
LIMCH1-211ENST00000509638 PIK3CBP42338 1070 aa28.19■■■□□ 2.1
LIMCH1-211ENST00000509638 ARSFP54793 590 aa28.19■■■□□ 2.1
LIMCH1-211ENST00000509638 ABCE1P61221 599 aaKnown RBP28.19■■■□□ 2.1
LIMCH1-211ENST00000509638 SNRPNP63162 240 aaKnown RBP28.19■■■□□ 2.1
LIMCH1-211ENST00000509638 PHEXP78562 749 aa28.19■■■□□ 2.1
LIMCH1-211ENST00000509638 BST1Q10588 318 aa28.19■■■□□ 2.1
LIMCH1-211ENST00000509638 STX3Q13277 289 aa28.19■■■□□ 2.1
LIMCH1-211ENST00000509638 MUM1Q2TAK8 710 aa28.19■■■□□ 2.1
LIMCH1-211ENST00000509638 TBC1D25Q3MII6 688 aa28.19■■■□□ 2.1
LIMCH1-211ENST00000509638 YOD1Q5VVQ6 348 aaPredicted RBP28.19■■■□□ 2.1
LIMCH1-211ENST00000509638 RHBDD2Q6NTF9 364 aa28.19■■■□□ 2.1
LIMCH1-211ENST00000509638 TTLL10Q6ZVT0 673 aa28.19■■■□□ 2.1
LIMCH1-211ENST00000509638 DTWD1Q8N5C7 304 aa28.19■■■□□ 2.1
LIMCH1-211ENST00000509638 RAB3IL1Q8TBN0 382 aa28.19■■■□□ 2.1
LIMCH1-211ENST00000509638 AGR3Q8TD06 166 aa28.19■■■□□ 2.1
LIMCH1-211ENST00000509638 MTFMTQ96DP5 389 aaKnown RBP28.19■■■□□ 2.1
LIMCH1-211ENST00000509638 FARSBQ9NSD9 589 aaKnown RBP28.19■■■□□ 2.1
LIMCH1-211ENST00000509638 ADGRE2Q9UHX3 823 aa28.19■■■□□ 2.1
LIMCH1-211ENST00000509638 TMEM184BQ9Y519 407 aaPredicted RBP28.19■■■□□ 2.1
LIMCH1-211ENST00000509638 TIMM22Q9Y584 194 aa28.19■■■□□ 2.1
LIMCH1-211ENST00000509638 SCN3AQ9NY46 2000 aa28.19■■■□□ 2.1
LIMCH1-211ENST00000509638 TEX51A0A1B0GUA7 166 aa28.18■■■□□ 2.1
LIMCH1-211ENST00000509638 DLGAP3O95886 979 aa28.18■■■□□ 2.1
LIMCH1-211ENST00000509638 HBQ1P09105 142 aa28.18■■■□□ 2.1
LIMCH1-211ENST00000509638 HNRNPH1P31943 449 aaKnown RBP28.18■■■□□ 2.1
LIMCH1-211ENST00000509638 EMP3P54852 163 aa28.18■■■□□ 2.1
LIMCH1-211ENST00000509638 FAM214AQ32MH5 1076 aa28.18■■■□□ 2.1
LIMCH1-211ENST00000509638 SGO1Q5FBB7 561 aa28.18■■■□□ 2.1
LIMCH1-211ENST00000509638 TOR1AIP1Q5JTV8 583 aa28.18■■■□□ 2.1
LIMCH1-211ENST00000509638 MANEAQ5SRI9 462 aa28.18■■■□□ 2.1
LIMCH1-211ENST00000509638 C10orf62Q5T681 223 aaPredicted RBP28.18■■■□□ 2.1
LIMCH1-211ENST00000509638 GARNL3Q5VVW2 1013 aa28.18■■■□□ 2.1
LIMCH1-211ENST00000509638 CLEC6AQ6EIG7 209 aa28.18■■■□□ 2.1
LIMCH1-211ENST00000509638 TRIM42Q8IWZ5 723 aa28.18■■■□□ 2.1
LIMCH1-211ENST00000509638 GALNT6Q8NCL4 622 aa28.18■■■□□ 2.1
LIMCH1-211ENST00000509638 ZNF578Q96N58 590 aaPredicted RBP28.18■■■□□ 2.1
LIMCH1-211ENST00000509638 HBEGFQ99075 208 aa28.18■■■□□ 2.1
LIMCH1-211ENST00000509638 MS4A8Q9BY19 250 aa28.18■■■□□ 2.1
LIMCH1-211ENST00000509638 AICDAQ9GZX7 198 aa28.18■■■□□ 2.1
LIMCH1-211ENST00000509638 ZNF395Q9H8N7 513 aaPredicted RBP28.18■■■□□ 2.1
LIMCH1-211ENST00000509638 NDOR1Q9UHB4 597 aa28.18■■■□□ 2.1
LIMCH1-211ENST00000509638 A0A1B0GX78 115 aa28.17■■■□□ 2.1
LIMCH1-211ENST00000509638 STMND1H3BQB6 276 aa28.17■■■□□ 2.1
LIMCH1-211ENST00000509638 MANBAO00462 879 aa28.17■■■□□ 2.1
LIMCH1-211ENST00000509638 KRT6AP02538 564 aa28.17■■■□□ 2.1
LIMCH1-211ENST00000509638 KRT6BP04259 564 aa28.17■■■□□ 2.1
LIMCH1-211ENST00000509638 CD82P27701 267 aa28.17■■■□□ 2.1
LIMCH1-211ENST00000509638 SLC1A6P48664 564 aa28.17■■■□□ 2.1
LIMCH1-211ENST00000509638 KRT6CP48668 564 aa28.17■■■□□ 2.1
LIMCH1-211ENST00000509638 SH2D4BQ5SQS7 431 aa28.17■■■□□ 2.1
LIMCH1-211ENST00000509638 C1orf189Q5VU69 101 aa28.17■■■□□ 2.1
LIMCH1-211ENST00000509638 ZFAND4Q86XD8 727 aa28.17■■■□□ 2.1
LIMCH1-211ENST00000509638 SELENOMQ8WWX9 145 aa28.17■■■□□ 2.1
LIMCH1-211ENST00000509638 GATA6Q92908 595 aa28.17■■■□□ 2.1
LIMCH1-211ENST00000509638 KLHL31Q9H511 634 aa28.17■■■□□ 2.1
LIMCH1-211ENST00000509638 ACSL6Q9UKU0 697 aa28.17■■■□□ 2.1
LIMCH1-211ENST00000509638 FIS1Q9Y3D6 152 aa28.17■■■□□ 2.1
LIMCH1-211ENST00000509638 LRIT2A6NDA9 550 aa28.16■■■□□ 2.1
LIMCH1-211ENST00000509638 MAGEB17A8MXT2 336 aa28.16■■■□□ 2.1
LIMCH1-211ENST00000509638 TMEM233B4DJY2 109 aa28.16■■■□□ 2.1
LIMCH1-211ENST00000509638 DSCR3O14972 297 aa28.16■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms