RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 AGAP4Q96P64 663 aa10.91□□□□□ -0.66
LIMCH1-208ENST00000508501 LIN28AQ9H9Z2 209 aaKnown RBP10.91□□□□□ -0.66
LIMCH1-208ENST00000508501 KCNMB3Q9NPA1 279 aa10.91□□□□□ -0.66
LIMCH1-208ENST00000508501 WASH6PQ9NQA3 447 aa10.91□□□□□ -0.66
LIMCH1-208ENST00000508501 NANSQ9NR45 359 aa10.91□□□□□ -0.66
LIMCH1-208ENST00000508501 PCDHB11Q9Y5F2 797 aa10.91□□□□□ -0.66
LIMCH1-208ENST00000508501 KIAA0556O60303 1618 aa10.9□□□□□ -0.66
LIMCH1-208ENST00000508501 MEGF11A6BM72 1044 aa10.9□□□□□ -0.66
LIMCH1-208ENST00000508501 CASTOR2A6NHX0 329 aa10.9□□□□□ -0.66
LIMCH1-208ENST00000508501 FAAHO00519 579 aa10.9□□□□□ -0.66
LIMCH1-208ENST00000508501 LYRM1O43325 122 aa10.9□□□□□ -0.66
LIMCH1-208ENST00000508501 PEX14O75381 377 aa10.9□□□□□ -0.66
LIMCH1-208ENST00000508501 ITGA5P08648 1049 aa10.9□□□□□ -0.66
LIMCH1-208ENST00000508501 GNRHRP30968 328 aa10.9□□□□□ -0.66
LIMCH1-208ENST00000508501 PPM1JQ5JR12 505 aa10.9□□□□□ -0.66
LIMCH1-208ENST00000508501 PRSS48Q7RTY5 328 aa10.9□□□□□ -0.66
LIMCH1-208ENST00000508501 OR56A1Q8NGH5 318 aa10.9□□□□□ -0.66
LIMCH1-208ENST00000508501 HEBP2Q9Y5Z4 205 aa10.9□□□□□ -0.66
LIMCH1-208ENST00000508501 F5H5P2 479 aa10.9□□□□□ -0.66
LIMCH1-208ENST00000508501 EPHB6O15197 1021 aa10.9□□□□□ -0.66
LIMCH1-208ENST00000508501 TXNL1O43396 289 aa10.9□□□□□ -0.66
LIMCH1-208ENST00000508501 BUD23O43709 281 aaKnown RBP10.9□□□□□ -0.66
LIMCH1-208ENST00000508501 HTR3BO95264 441 aa10.9□□□□□ -0.66
LIMCH1-208ENST00000508501 LYPLA2O95372 231 aa10.9□□□□□ -0.66
LIMCH1-208ENST00000508501 CHRM5P08912 532 aaPredicted RBP10.9□□□□□ -0.66
LIMCH1-208ENST00000508501 MYF6P23409 242 aa10.9□□□□□ -0.66
LIMCH1-208ENST00000508501 PPIGQ13427 754 aaKnown RBP eCLIP10.9□□□□□ -0.66
LIMCH1-208ENST00000508501 SPHARQ15513 63 aa10.9□□□□□ -0.66
LIMCH1-208ENST00000508501 FAM171A1Q5VUB5 890 aa10.9□□□□□ -0.66
LIMCH1-208ENST00000508501 HGSNATQ68CP4 663 aa10.9□□□□□ -0.66
LIMCH1-208ENST00000508501 ELP2Q6IA86 826 aa10.9□□□□□ -0.66
LIMCH1-208ENST00000508501 FAM151BQ6UXP7 276 aa10.9□□□□□ -0.66
LIMCH1-208ENST00000508501 AQP11Q8NBQ7 271 aa10.9□□□□□ -0.66
LIMCH1-208ENST00000508501 FKBP10Q96AY3 582 aa10.9□□□□□ -0.66
LIMCH1-208ENST00000508501 ZDHHC4Q9NPG8 344 aa10.9□□□□□ -0.66
LIMCH1-208ENST00000508501 GPRC5BQ9NZH0 403 aa10.9□□□□□ -0.66
LIMCH1-208ENST00000508501 VPS29Q9UBQ0 182 aa10.9□□□□□ -0.66
LIMCH1-208ENST00000508501 ZNF705GA8MUZ8 300 aaPredicted RBP10.9□□□□□ -0.66
LIMCH1-208ENST00000508501 A8MV72 311 aaPredicted RBP10.9□□□□□ -0.66
LIMCH1-208ENST00000508501 ANKRD63C9JTQ0 380 aa10.9□□□□□ -0.66
LIMCH1-208ENST00000508501 PHYHO14832 338 aa10.9□□□□□ -0.66
LIMCH1-208ENST00000508501 COQ9O75208 318 aa10.9□□□□□ -0.66
LIMCH1-208ENST00000508501 PPM1AP35813 382 aa10.9□□□□□ -0.66
LIMCH1-208ENST00000508501 VSX2P58304 361 aaPredicted RBP10.9□□□□□ -0.66
LIMCH1-208ENST00000508501 RAB4BP61018 213 aa10.9□□□□□ -0.66
LIMCH1-208ENST00000508501 EMX2Q04743 252 aa10.9□□□□□ -0.66
LIMCH1-208ENST00000508501 EMC10Q5UCC4 262 aa10.9□□□□□ -0.66
LIMCH1-208ENST00000508501 MSANTD2Q6P1R3 559 aa10.9□□□□□ -0.66
LIMCH1-208ENST00000508501 PGAP3Q96FM1 320 aaPredicted RBP10.9□□□□□ -0.66
LIMCH1-208ENST00000508501 FCRL2Q96LA5 508 aaPredicted RBP10.9□□□□□ -0.66
LIMCH1-208ENST00000508501 TGM7Q96PF1 710 aa10.9□□□□□ -0.66
LIMCH1-208ENST00000508501 DPYSL5Q9BPU6 564 aa10.9□□□□□ -0.66
LIMCH1-208ENST00000508501 TSSK6Q9BXA6 273 aa10.9□□□□□ -0.66
LIMCH1-208ENST00000508501 SAMD10Q9BYL1 202 aa10.9□□□□□ -0.66
LIMCH1-208ENST00000508501 ZCCHC3Q9NUD5 404 aaKnown RBP10.9□□□□□ -0.66
LIMCH1-208ENST00000508501 CNTNAP4Q9C0A0 1308 aa10.9□□□□□ -0.66
LIMCH1-208ENST00000508501 USP31Q70CQ4 1352 aa10.9□□□□□ -0.66
LIMCH1-208ENST00000508501 ARAP3Q8WWN8 1544 aa10.9□□□□□ -0.66
LIMCH1-208ENST00000508501 OR6C75A6NL08 312 aa10.9□□□□□ -0.67
LIMCH1-208ENST00000508501 TGOLN2O43493 480 aa10.9□□□□□ -0.67
LIMCH1-208ENST00000508501 TLR5O60602 858 aa10.9□□□□□ -0.67
LIMCH1-208ENST00000508501 ENGP17813 658 aa10.9□□□□□ -0.67
LIMCH1-208ENST00000508501 DLX5P56178 289 aa10.9□□□□□ -0.67
LIMCH1-208ENST00000508501 OGDHQ02218 1023 aa10.9□□□□□ -0.67
LIMCH1-208ENST00000508501 SLC39A12Q504Y0 691 aa10.9□□□□□ -0.67
LIMCH1-208ENST00000508501 CRTC1Q6UUV9 634 aa10.9□□□□□ -0.67
LIMCH1-208ENST00000508501 ZNF574Q6ZN55 896 aaPredicted RBP10.9□□□□□ -0.67
LIMCH1-208ENST00000508501 CCDC71LQ8N9Z2 235 aa10.9□□□□□ -0.67
LIMCH1-208ENST00000508501 RNF128Q8TEB7 428 aa10.9□□□□□ -0.67
LIMCH1-208ENST00000508501 EBF4Q9BQW3 602 aa10.9□□□□□ -0.67
LIMCH1-208ENST00000508501 TMEM106CQ9BVX2 250 aa10.9□□□□□ -0.67
LIMCH1-208ENST00000508501 MAF1Q9H063 256 aa10.9□□□□□ -0.67
LIMCH1-208ENST00000508501 MAGEH1Q9H213 219 aa10.9□□□□□ -0.67
LIMCH1-208ENST00000508501 ELP3Q9H9T3 547 aa10.9□□□□□ -0.67
LIMCH1-208ENST00000508501 BPIFA1Q9NP55 256 aa10.9□□□□□ -0.67
LIMCH1-208ENST00000508501 ZDHHC18Q9NUE0 388 aa10.9□□□□□ -0.67
LIMCH1-208ENST00000508501 COPS7AQ9UBW8 275 aa10.9□□□□□ -0.67
LIMCH1-208ENST00000508501 ZNF175Q9Y473 711 aa10.9□□□□□ -0.67
LIMCH1-208ENST00000508501 AGAP14A8MT82 685 aa10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 PCDH7O60245 1069 aa10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 ECI2O75521 394 aa10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 TYRP14679 529 aa10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 CYP2B6P20813 491 aa10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 S1PR1P21453 382 aa10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 IL12BP29460 328 aa10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 PKLRP30613 574 aa10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 TAS2R39P59534 338 aa10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 TAS2R20P59543 309 aa10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 HSD11B2P80365 405 aa10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 EIF4HQ15056 248 aaKnown RBP10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 SF1Q15637 639 aaKnown RBP10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 PLA2G4EQ3MJ16 856 aa10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 GPR149Q86SP6 731 aa10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 RELL1Q8IUW5 271 aa10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 SEMA6DQ8NFY4 1073 aa10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 ELMOD3Q96FG2 381 aa10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 APMAPQ9HDC9 416 aa10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 CHRAC1Q9NRG0 131 aa10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 TMPRSS11EQ9UL52 423 aa10.89□□□□□ -0.67
LIMCH1-208ENST00000508501 KRBA1A5PL33 1030 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms