RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 DCAF12Q5T6F0 453 aa9.58□□□□□ -0.88
NUP54-203ENST00000504173 TMEM164Q5U3C3 297 aa9.58□□□□□ -0.88
NUP54-203ENST00000504173 PRAMEF9Q5VWM5 478 aa9.58□□□□□ -0.88
NUP54-203ENST00000504173 HIST2H2AA3Q6FI13 130 aa9.58□□□□□ -0.88
NUP54-203ENST00000504173 FRMPD2BQ6IN97 320 aa9.58□□□□□ -0.88
NUP54-203ENST00000504173 TMIGD1Q6UXZ0 262 aa9.58□□□□□ -0.88
NUP54-203ENST00000504173 CCDC81Q6ZN84 652 aa9.58□□□□□ -0.88
NUP54-203ENST00000504173 BPHLQ86WA6 291 aaPredicted RBP9.58□□□□□ -0.88
NUP54-203ENST00000504173 PPP1R3BQ86XI6 285 aa9.58□□□□□ -0.88
NUP54-203ENST00000504173 NUDCD3Q8IVD9 361 aa9.58□□□□□ -0.88
NUP54-203ENST00000504173 GPR135Q8IZ08 494 aa9.58□□□□□ -0.88
NUP54-203ENST00000504173 ZNF740Q8NDX6 193 aa9.58□□□□□ -0.88
NUP54-203ENST00000504173 OR4K1Q8NGD4 311 aa9.58□□□□□ -0.88
NUP54-203ENST00000504173 OR52B6Q8NGF0 335 aa9.58□□□□□ -0.88
NUP54-203ENST00000504173 OR8K5Q8NH50 307 aa9.58□□□□□ -0.88
NUP54-203ENST00000504173 OR1L3Q8NH93 324 aa9.58□□□□□ -0.88
NUP54-203ENST00000504173 PPP1R14CQ8TAE6 165 aa9.58□□□□□ -0.88
NUP54-203ENST00000504173 USP7Q93009 1102 aa9.58□□□□□ -0.88
NUP54-203ENST00000504173 ZNF501Q96CX3 271 aaPredicted RBP9.58□□□□□ -0.88
NUP54-203ENST00000504173 THAP11Q96EK4 314 aa9.58□□□□□ -0.88
NUP54-203ENST00000504173 MOCOSQ96EN8 888 aa9.58□□□□□ -0.88
NUP54-203ENST00000504173 WDR34Q96EX3 536 aa9.58□□□□□ -0.88
NUP54-203ENST00000504173 CDK15Q96Q40 435 aa9.58□□□□□ -0.88
NUP54-203ENST00000504173 TEFMQ96QE5 360 aaKnown RBP9.58□□□□□ -0.88
NUP54-203ENST00000504173 EFCAB11Q9BUY7 163 aa9.58□□□□□ -0.88
NUP54-203ENST00000504173 DDA1Q9BW61 102 aa9.58□□□□□ -0.88
NUP54-203ENST00000504173 ASPSCR1Q9BZE9 553 aa9.58□□□□□ -0.88
NUP54-203ENST00000504173 DRC3Q9H069 523 aa9.58□□□□□ -0.88
NUP54-203ENST00000504173 GSTO2Q9H4Y5 243 aa9.58□□□□□ -0.88
NUP54-203ENST00000504173 ZBTB26Q9HCK0 441 aa9.58□□□□□ -0.88
NUP54-203ENST00000504173 THSD1Q9NS62 852 aa9.58□□□□□ -0.88
NUP54-203ENST00000504173 GEMIN8Q9NWZ8 242 aaKnown RBP9.58□□□□□ -0.88
NUP54-203ENST00000504173 PILRAQ9UKJ1 303 aa9.58□□□□□ -0.88
NUP54-203ENST00000504173 STK38LQ9Y2H1 464 aa9.58□□□□□ -0.88
NUP54-203ENST00000504173 PCDHGA4Q9Y5G9 962 aa9.58□□□□□ -0.88
NUP54-203ENST00000504173 DNHD1Q96M86 4753 aa9.58□□□□□ -0.88
NUP54-203ENST00000504173 PDZD2O15018 2839 aa9.58□□□□□ -0.88
NUP54-203ENST00000504173 CSMD1Q96PZ7 3565 aa9.58□□□□□ -0.88
NUP54-203ENST00000504173 PCNX1Q96RV3 2341 aa9.57□□□□□ -0.88
NUP54-203ENST00000504173 MTORP42345 2549 aa9.57□□□□□ -0.88
NUP54-203ENST00000504173 LOC105369274A0A096LPK9 316 aa9.57□□□□□ -0.88
NUP54-203ENST00000504173 LOC102723532A0A0G2JNH3 316 aa9.57□□□□□ -0.88
NUP54-203ENST00000504173 OR7A17O14581 309 aa9.57□□□□□ -0.88
NUP54-203ENST00000504173 BIRC5O15392 142 aa9.57□□□□□ -0.88
NUP54-203ENST00000504173 ZSCAN9O15535 394 aaPredicted RBP9.57□□□□□ -0.88
NUP54-203ENST00000504173 LCMT2O60294 686 aaKnown RBP9.57□□□□□ -0.88
NUP54-203ENST00000504173 SRPX2O60687 465 aaPredicted RBP9.57□□□□□ -0.88
NUP54-203ENST00000504173 UGDHO60701 494 aa9.57□□□□□ -0.88
NUP54-203ENST00000504173 WFS1O76024 890 aa9.57□□□□□ -0.88
NUP54-203ENST00000504173 CLDN9O95484 217 aa9.57□□□□□ -0.88
NUP54-203ENST00000504173 STATHP02808 62 aa9.57□□□□□ -0.88
NUP54-203ENST00000504173 EIF2S1P05198 315 aaKnown RBP9.57□□□□□ -0.88
NUP54-203ENST00000504173 SERPIND1P05546 499 aa9.57□□□□□ -0.88
NUP54-203ENST00000504173 FGF5P12034 268 aa9.57□□□□□ -0.88
NUP54-203ENST00000504173 CD22P20273 847 aa9.57□□□□□ -0.88
NUP54-203ENST00000504173 HNF4AP41235 474 aa9.57□□□□□ -0.88
NUP54-203ENST00000504173 CASP2P42575 452 aa9.57□□□□□ -0.88
NUP54-203ENST00000504173 SCTRP47872 440 aa9.57□□□□□ -0.88
NUP54-203ENST00000504173 PPP2R2AP63151 447 aa9.57□□□□□ -0.88
NUP54-203ENST00000504173 PCDH1Q08174 1060 aa9.57□□□□□ -0.88
NUP54-203ENST00000504173 LCP2Q13094 533 aa9.57□□□□□ -0.88
NUP54-203ENST00000504173 TRAF3Q13114 568 aa9.57□□□□□ -0.88
NUP54-203ENST00000504173 LIPJQ5W064 366 aa9.57□□□□□ -0.88
NUP54-203ENST00000504173 GRHL2Q6ISB3 625 aa9.57□□□□□ -0.88
NUP54-203ENST00000504173 MED27Q6P2C8 311 aa9.57□□□□□ -0.88
NUP54-203ENST00000504173 TLDC1Q6P9B6 456 aa9.57□□□□□ -0.88
NUP54-203ENST00000504173 ZCCHC23Q6ZST2 131 aa9.57□□□□□ -0.88
NUP54-203ENST00000504173 FRMD7Q6ZUT3 714 aa9.57□□□□□ -0.88
NUP54-203ENST00000504173 MILR1Q7Z6M3 343 aa9.57□□□□□ -0.88
NUP54-203ENST00000504173 ASPGQ86U10 573 aa9.57□□□□□ -0.88
NUP54-203ENST00000504173 TMEM126BQ8IUX1 230 aa9.57□□□□□ -0.88
NUP54-203ENST00000504173 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP9.57□□□□□ -0.88
NUP54-203ENST00000504173 OR4N4Q8N0Y3 316 aa9.57□□□□□ -0.88
NUP54-203ENST00000504173 CSNK1A1LQ8N752 337 aa9.57□□□□□ -0.88
NUP54-203ENST00000504173 TTC29Q8NA56 475 aaPredicted RBP9.57□□□□□ -0.88
NUP54-203ENST00000504173 MFSD9Q8NBP5 474 aa9.57□□□□□ -0.88
NUP54-203ENST00000504173 TTLQ8NG68 377 aa9.57□□□□□ -0.88
NUP54-203ENST00000504173 UBE2E3Q969T4 207 aa9.57□□□□□ -0.88
NUP54-203ENST00000504173 PMEPA1Q969W9 287 aa9.57□□□□□ -0.88
NUP54-203ENST00000504173 PRR11Q96HE9 360 aaPredicted RBP9.57□□□□□ -0.88
NUP54-203ENST00000504173 MAGEB10Q96LZ2 347 aaPredicted RBP9.57□□□□□ -0.88
NUP54-203ENST00000504173 OR2A5Q96R48 311 aa9.57□□□□□ -0.88
NUP54-203ENST00000504173 ZNF382Q96SR6 550 aa9.57□□□□□ -0.88
NUP54-203ENST00000504173 ZPBPQ9BS86 351 aa9.57□□□□□ -0.88
NUP54-203ENST00000504173 SARGQ9BW04 601 aa9.57□□□□□ -0.88
NUP54-203ENST00000504173 GATA5Q9BWX5 397 aaPredicted RBP9.57□□□□□ -0.88
NUP54-203ENST00000504173 NLNQ9BYT8 704 aa9.57□□□□□ -0.88
NUP54-203ENST00000504173 PITHD1Q9GZP4 211 aaPredicted RBP9.57□□□□□ -0.88
NUP54-203ENST00000504173 SPRTNQ9H040 489 aaPredicted RBP9.57□□□□□ -0.88
NUP54-203ENST00000504173 NT5DC2Q9H857 520 aa9.57□□□□□ -0.88
NUP54-203ENST00000504173 MED4Q9NPJ6 270 aa9.57□□□□□ -0.88
NUP54-203ENST00000504173 RNF11Q9Y3C5 154 aa9.57□□□□□ -0.88
NUP54-203ENST00000504173 PCDHGA3Q9Y5H0 932 aa9.57□□□□□ -0.88
NUP54-203ENST00000504173 B3GALT1Q9Y5Z6 326 aa9.57□□□□□ -0.88
NUP54-203ENST00000504173 KCNE1BA0A087WTH5 132 aa9.56□□□□□ -0.88
NUP54-203ENST00000504173 ANKDD1BA6NHY2 528 aa9.56□□□□□ -0.88
NUP54-203ENST00000504173 C9orf172C9J069 976 aa9.56□□□□□ -0.88
NUP54-203ENST00000504173 PPP6CO00743 305 aa9.56□□□□□ -0.88
NUP54-203ENST00000504173 TXNDC9O14530 226 aa9.56□□□□□ -0.88
NUP54-203ENST00000504173 P2RX6O15547 441 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms