RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 A0A1W2PPW3 197 aa10.4□□□□□ -0.74
LIMCH1-205ENST00000503057 RIIAD1A6NNX1 92 aa10.4□□□□□ -0.74
LIMCH1-205ENST00000503057 STAT5AP42229 794 aa10.4□□□□□ -0.74
LIMCH1-205ENST00000503057 BLVRAP53004 296 aa10.4□□□□□ -0.74
LIMCH1-205ENST00000503057 DOC2AQ14183 400 aa10.4□□□□□ -0.74
LIMCH1-205ENST00000503057 ATG14Q6ZNE5 492 aa10.4□□□□□ -0.74
LIMCH1-205ENST00000503057 C7orf61Q8IZ16 206 aa10.4□□□□□ -0.74
LIMCH1-205ENST00000503057 KLHL23Q8NBE8 558 aa10.4□□□□□ -0.74
LIMCH1-205ENST00000503057 POF1BQ8WVV4 589 aa10.4□□□□□ -0.74
LIMCH1-205ENST00000503057 LMLNQ96KR4 655 aa10.4□□□□□ -0.74
LIMCH1-205ENST00000503057 PKP4Q99569 1192 aa10.4□□□□□ -0.74
LIMCH1-205ENST00000503057 NTMT1Q9BV86 223 aa10.4□□□□□ -0.74
LIMCH1-205ENST00000503057 GTPBP1O00178 669 aaKnown RBP10.4□□□□□ -0.74
LIMCH1-205ENST00000503057 CAPN5O15484 640 aaPredicted RBP10.4□□□□□ -0.74
LIMCH1-205ENST00000503057 VEGFDO43915 354 aa10.4□□□□□ -0.74
LIMCH1-205ENST00000503057 TSC22D2O75157 780 aa10.4□□□□□ -0.74
LIMCH1-205ENST00000503057 SUOXP51687 545 aa10.4□□□□□ -0.74
LIMCH1-205ENST00000503057 RNF44Q7L0R7 432 aa10.4□□□□□ -0.74
LIMCH1-205ENST00000503057 HERVK_113Q902F9 699 aa10.4□□□□□ -0.74
LIMCH1-205ENST00000503057 DIRAS2Q96HU8 199 aa10.4□□□□□ -0.74
LIMCH1-205ENST00000503057 MAELQ96JY0 434 aaKnown RBP10.4□□□□□ -0.74
LIMCH1-205ENST00000503057 MND1Q9BWT6 205 aa10.4□□□□□ -0.74
LIMCH1-205ENST00000503057 TPK1Q9H3S4 243 aa10.4□□□□□ -0.74
LIMCH1-205ENST00000503057 SOX17Q9H6I2 414 aaPredicted RBP10.4□□□□□ -0.74
LIMCH1-205ENST00000503057 TAS2R9Q9NYW1 312 aa10.4□□□□□ -0.74
LIMCH1-205ENST00000503057 EVPLQ92817 2033 aa10.4□□□□□ -0.75
LIMCH1-205ENST00000503057 NPIPB15A6NHN6 443 aaPredicted RBP10.4□□□□□ -0.75
LIMCH1-205ENST00000503057 GJB3O75712 270 aa10.4□□□□□ -0.75
LIMCH1-205ENST00000503057 INMTO95050 263 aa10.4□□□□□ -0.75
LIMCH1-205ENST00000503057 ALDOCP09972 364 aaKnown RBP10.4□□□□□ -0.75
LIMCH1-205ENST00000503057 SUSD1Q6UWL2 747 aa10.4□□□□□ -0.75
LIMCH1-205ENST00000503057 CHMP1BQ7LBR1 199 aa10.4□□□□□ -0.75
LIMCH1-205ENST00000503057 TAS1R1Q7RTX1 841 aa10.4□□□□□ -0.75
LIMCH1-205ENST00000503057 ADGRG5Q8IZF4 528 aa10.4□□□□□ -0.75
LIMCH1-205ENST00000503057 OR56A1Q8NGH5 318 aa10.4□□□□□ -0.75
LIMCH1-205ENST00000503057 ZCCHC10Q8TBK6 192 aa10.4□□□□□ -0.75
LIMCH1-205ENST00000503057 KLHL6Q8WZ60 621 aa10.4□□□□□ -0.75
LIMCH1-205ENST00000503057 TMCO6Q96DC7 493 aa10.4□□□□□ -0.75
LIMCH1-205ENST00000503057 GIN1Q9NXP7 522 aa10.4□□□□□ -0.75
LIMCH1-205ENST00000503057 TMEM98Q9Y2Y6 226 aa10.4□□□□□ -0.75
LIMCH1-205ENST00000503057 TTC34A8MYJ7 566 aa10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 FBP2O00757 339 aa10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 ERI3O43414 337 aaKnown RBP10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 ADH1BP00325 375 aa10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 TBPL1P62380 186 aa10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 ARF5P84085 180 aa10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 KCNC4Q03721 635 aa10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 SCN1BQ07699 218 aa10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 CRB2Q5IJ48 1285 aa10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 ZNF648Q5T619 568 aaPredicted RBP10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 SHQ1Q6PI26 577 aaKnown RBP10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 ERN2Q76MJ5 926 aaKnown RBP10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 RAB43Q86YS6 212 aa10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 TMC8Q8IU68 726 aa10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 SETD7Q8WTS6 366 aaKnown RBP10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 RIPOR3Q96MK2 946 aa10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 KCNN2Q9H2S1 579 aa10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 ELOVL2Q9NXB9 296 aa10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 RGS17Q9UGC6 210 aaPredicted RBP10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 GREB1LQ9C091 1923 aaPredicted RBP10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 SLC31A1O15431 190 aa10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 NDUFS4O43181 175 aa10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 GBAP04062 536 aa10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 CTSAP10619 480 aa10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 PRDX3P30048 256 aaKnown RBP10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 RGRP47804 291 aa10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 ADAM17P78536 824 aa10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 GRHL2Q6ISB3 625 aa10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 HTR3DQ70Z44 454 aa10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 ABHD13Q7L211 337 aa10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 PELI3Q8N2H9 469 aa10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 KCNS3Q9BQ31 491 aa10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 CPEB1Q9BZB8 566 aaKnown RBP10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 POLR2J2Q9GZM3 115 aaKnown RBP10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 CWH43Q9H720 699 aa10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 SLC28A3Q9HAS3 691 aa10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 LHX3Q9UBR4 397 aa10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 ACSL5Q9ULC5 683 aa10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 HLA-DQA2P01906 255 aa10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 GSTM2P28161 218 aa10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 HOXD9P28356 352 aaPredicted RBP10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 MAT2AP31153 395 aaKnown RBP10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 AKT2P31751 481 aa10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 CCT3P49368 545 aaKnown RBP10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 MYBPC1Q00872 1141 aa10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 FCHO2Q0JRZ9 810 aa10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 SYT16Q17RD7 645 aa10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 DTWD1Q8N5C7 304 aa10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 MFSD2AQ8NA29 543 aa10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 OR4K1Q8NGD4 311 aa10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 OR5P2Q8WZ92 322 aa10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 KLK6Q92876 244 aa10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 ZNF689Q96CS4 500 aaPredicted RBP10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 AMBNQ9NP70 447 aa10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 PLAGL1Q9UM63 463 aa10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 MGAT4BQ9UQ53 548 aa10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 IGLV3-25P01717 112 aa10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 CLK3P49761 638 aaKnown RBP10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 CDKL1Q00532 357 aa10.39□□□□□ -0.75
LIMCH1-205ENST00000503057 TUBB3Q13509 450 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms