RNA–Protein interactions for RNA: ENST00000498540.2

TRAF4-212, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 748 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-212ENST00000498540 ART1P52961 327 aa13.79□□□□□ -0.2
TRAF4-212ENST00000498540 OR4D2P58180 307 aa13.79□□□□□ -0.2
TRAF4-212ENST00000498540 MEI1Q5TIA1 1274 aa13.79□□□□□ -0.2
TRAF4-212ENST00000498540 KIAA0930Q6ICG6 404 aaPredicted RBP13.79□□□□□ -0.2
TRAF4-212ENST00000498540 CEP128Q6ZU80 1094 aa13.79□□□□□ -0.2
TRAF4-212ENST00000498540 SLC26A11Q86WA9 606 aa13.79□□□□□ -0.2
TRAF4-212ENST00000498540 EID3Q8N140 333 aa13.79□□□□□ -0.2
TRAF4-212ENST00000498540 FAM57AQ8TBR7 257 aa13.79□□□□□ -0.2
TRAF4-212ENST00000498540 CCDC177Q9NQR7 707 aaPredicted RBP13.79□□□□□ -0.2
TRAF4-212ENST00000498540 TNFRSF10DQ9UBN6 386 aa13.79□□□□□ -0.2
TRAF4-212ENST00000498540 DRG1Q9Y295 367 aaKnown RBP13.79□□□□□ -0.2
TRAF4-212ENST00000498540 A0A1B0GTH9 108 aa13.78□□□□□ -0.2
TRAF4-212ENST00000498540 FAM90A27PA6NNH2 459 aa13.78□□□□□ -0.2
TRAF4-212ENST00000498540 LCMT2O60294 686 aaKnown RBP13.78□□□□□ -0.2
TRAF4-212ENST00000498540 DNAJB6O75190 326 aa13.78□□□□□ -0.2
TRAF4-212ENST00000498540 MPC1LP0DKB6 136 aa13.78□□□□□ -0.2
TRAF4-212ENST00000498540 HRH2P25021 359 aa13.78□□□□□ -0.2
TRAF4-212ENST00000498540 PTGS2P35354 604 aa13.78□□□□□ -0.2
TRAF4-212ENST00000498540 CYB561P49447 251 aa13.78□□□□□ -0.2
TRAF4-212ENST00000498540 ITGA8P53708 1063 aa13.78□□□□□ -0.2
TRAF4-212ENST00000498540 TFF3Q07654 80 aa13.78□□□□□ -0.2
TRAF4-212ENST00000498540 RPS6KA1Q15418 735 aa13.78□□□□□ -0.2
TRAF4-212ENST00000498540 SIX1Q15475 284 aaPredicted RBP13.78□□□□□ -0.2
TRAF4-212ENST00000498540 TTLL9Q3SXZ7 439 aa13.78□□□□□ -0.2
TRAF4-212ENST00000498540 ZNF549Q6P9A3 640 aa13.78□□□□□ -0.2
TRAF4-212ENST00000498540 CYHR1Q6ZMK1 362 aa13.78□□□□□ -0.2
TRAF4-212ENST00000498540 PIWIL4Q7Z3Z4 852 aaKnown RBP13.78□□□□□ -0.2
TRAF4-212ENST00000498540 ASPGQ86U10 573 aa13.78□□□□□ -0.2
TRAF4-212ENST00000498540 CAMKVQ8NCB2 501 aa13.78□□□□□ -0.2
TRAF4-212ENST00000498540 THAP11Q96EK4 314 aa13.78□□□□□ -0.2
TRAF4-212ENST00000498540 OR1F2PQ96R84 312 aa13.78□□□□□ -0.2
TRAF4-212ENST00000498540 DESI2Q9BSY9 194 aa13.78□□□□□ -0.2
TRAF4-212ENST00000498540 UCK2Q9BZX2 261 aa13.78□□□□□ -0.2
TRAF4-212ENST00000498540 TRIM45Q9H8W5 580 aaPredicted RBP13.78□□□□□ -0.2
TRAF4-212ENST00000498540 NAV3Q8IVL0 2385 aa13.78□□□□□ -0.2
TRAF4-212ENST00000498540 TCRBV7S3A2A0A539 114 aa13.77□□□□□ -0.21
TRAF4-212ENST00000498540 AP3B1O00203 1094 aa13.77□□□□□ -0.21
TRAF4-212ENST00000498540 TFECO14948 347 aaPredicted RBP13.77□□□□□ -0.21
TRAF4-212ENST00000498540 ZBTB14O43829 449 aa13.77□□□□□ -0.21
TRAF4-212ENST00000498540 CDC40O60508 579 aaKnown RBP eCLIP13.77□□□□□ -0.219e-6■■■□□ 15.9
TRAF4-212ENST00000498540 AVILO75366 819 aa13.77□□□□□ -0.21
TRAF4-212ENST00000498540 NADKO95544 446 aaPredicted RBP13.77□□□□□ -0.21
TRAF4-212ENST00000498540 MEOX1P50221 254 aa13.77□□□□□ -0.21
TRAF4-212ENST00000498540 MLF1P58340 268 aa13.77□□□□□ -0.21
TRAF4-212ENST00000498540 OLR1P78380 273 aa13.77□□□□□ -0.21
TRAF4-212ENST00000498540 KIF5AQ12840 1032 aa13.77□□□□□ -0.21
TRAF4-212ENST00000498540 ZNF470Q6ECI4 717 aa13.77□□□□□ -0.21
TRAF4-212ENST00000498540 CAPN13Q6MZZ7 669 aaPredicted RBP13.77□□□□□ -0.21
TRAF4-212ENST00000498540 NEPROQ6NW34 567 aa13.77□□□□□ -0.21
TRAF4-212ENST00000498540 MBOAT1Q6ZNC8 495 aa13.77□□□□□ -0.21
TRAF4-212ENST00000498540 UBE2R2Q712K3 238 aaPredicted RBP13.77□□□□□ -0.21
TRAF4-212ENST00000498540 RPRMLQ8N4K4 120 aa13.77□□□□□ -0.21
TRAF4-212ENST00000498540 SLC13A3Q8WWT9 602 aa13.77□□□□□ -0.21
TRAF4-212ENST00000498540 NRGNQ92686 78 aa13.77□□□□□ -0.21
TRAF4-212ENST00000498540 INTS10Q9NVR2 710 aaKnown RBP13.77□□□□□ -0.21
TRAF4-212ENST00000498540 RNF6Q9Y252 685 aa13.77□□□□□ -0.21
TRAF4-212ENST00000498540 SLC22A7Q9Y694 548 aa13.77□□□□□ -0.21
TRAF4-212ENST00000498540 NIPBLQ6KC79 2804 aaeCLIP13.77□□□□□ -0.212e-8■■■□□ 17.1
TRAF4-212ENST00000498540 PHF3Q92576 2039 aaKnown RBP13.76□□□□□ -0.21
TRAF4-212ENST00000498540 HS6ST1O60243 411 aa13.76□□□□□ -0.21
TRAF4-212ENST00000498540 TOXO94900 526 aa13.76□□□□□ -0.21
TRAF4-212ENST00000498540 B3GALT4O96024 378 aa13.76□□□□□ -0.21
TRAF4-212ENST00000498540 FHP07954 510 aa13.76□□□□□ -0.21
TRAF4-212ENST00000498540 SLC35G6P0C7Q6 338 aa13.76□□□□□ -0.21
TRAF4-212ENST00000498540 CDH1P12830 882 aa13.76□□□□□ -0.21
TRAF4-212ENST00000498540 ENO3P13929 434 aaPredicted RBP13.76□□□□□ -0.21
TRAF4-212ENST00000498540 IL10P22301 178 aa13.76□□□□□ -0.21
TRAF4-212ENST00000498540 MSX1P28360 303 aa13.76□□□□□ -0.21
TRAF4-212ENST00000498540 TRHRP34981 398 aaPredicted RBP13.76□□□□□ -0.21
TRAF4-212ENST00000498540 HLCSP50747 726 aa13.76□□□□□ -0.21
TRAF4-212ENST00000498540 NR0B1P51843 470 aaKnown RBP13.76□□□□□ -0.21
TRAF4-212ENST00000498540 TERF1P54274 439 aa13.76□□□□□ -0.21
TRAF4-212ENST00000498540 MPP1Q00013 466 aa13.76□□□□□ -0.21
TRAF4-212ENST00000498540 CTBP1Q13363 440 aa13.76□□□□□ -0.21
TRAF4-212ENST00000498540 CMPK2Q5EBM0 449 aa13.76□□□□□ -0.21
TRAF4-212ENST00000498540 TMEM200AQ86VY9 491 aa13.76□□□□□ -0.21
TRAF4-212ENST00000498540 DENND6AQ8IWF6 608 aa13.76□□□□□ -0.21
TRAF4-212ENST00000498540 SULF2Q8IWU5 870 aa13.76□□□□□ -0.21
TRAF4-212ENST00000498540 DMRTC2Q8IXT2 367 aaPredicted RBP13.76□□□□□ -0.21
TRAF4-212ENST00000498540 CPNE9Q8IYJ1 553 aa13.76□□□□□ -0.21
TRAF4-212ENST00000498540 AFAP1L2Q8N4X5 818 aa13.76□□□□□ -0.21
TRAF4-212ENST00000498540 POGLUT1Q8NBL1 392 aa13.76□□□□□ -0.21
TRAF4-212ENST00000498540 ZNF740Q8NDX6 193 aa13.76□□□□□ -0.21
TRAF4-212ENST00000498540 LILRB4Q8NHJ6 448 aa13.76□□□□□ -0.21
TRAF4-212ENST00000498540 CD200R1Q8TD46 325 aa13.76□□□□□ -0.21
TRAF4-212ENST00000498540 ASB5Q8WWX0 329 aa13.76□□□□□ -0.21
TRAF4-212ENST00000498540 KCNJ9Q92806 393 aa13.76□□□□□ -0.21
TRAF4-212ENST00000498540 TMEM125Q96AQ2 219 aa13.76□□□□□ -0.21
TRAF4-212ENST00000498540 TBC1D20Q96BZ9 403 aa13.76□□□□□ -0.21
TRAF4-212ENST00000498540 GPR21Q99679 349 aa13.76□□□□□ -0.21
TRAF4-212ENST00000498540 FBXO6Q9NRD1 293 aaPredicted RBP13.76□□□□□ -0.21
TRAF4-212ENST00000498540 KLHL42Q9P2K6 505 aa13.76□□□□□ -0.21
TRAF4-212ENST00000498540 ADAMTS6Q9UKP5 1117 aa13.76□□□□□ -0.21
TRAF4-212ENST00000498540 VPS9D1Q9Y2B5 631 aa13.76□□□□□ -0.21
TRAF4-212ENST00000498540 KLF13Q9Y2Y9 288 aaPredicted RBP13.76□□□□□ -0.21
TRAF4-212ENST00000498540 CTAGE9A4FU28 777 aa13.75□□□□□ -0.21
TRAF4-212ENST00000498540 FOXO6A8MYZ6 492 aa13.75□□□□□ -0.21
TRAF4-212ENST00000498540 CDK2AP1O14519 115 aa13.75□□□□□ -0.21
TRAF4-212ENST00000498540 CHST10O43529 356 aa13.75□□□□□ -0.21
TRAF4-212ENST00000498540 GALR3O60755 368 aaPredicted RBP13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms