RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 HBEGFQ99075 208 aa11.34□□□□□ -0.59
CUX1-210ENST00000497815 ZPBPQ9BS86 351 aa11.34□□□□□ -0.59
CUX1-210ENST00000497815 TRMOQ9BU70 441 aa11.34□□□□□ -0.59
CUX1-210ENST00000497815 PITHD1Q9GZP4 211 aaPredicted RBP11.34□□□□□ -0.59
CUX1-210ENST00000497815 RHBGQ9H310 441 aa11.34□□□□□ -0.59
CUX1-210ENST00000497815 KLHL31Q9H511 634 aa11.34□□□□□ -0.59
CUX1-210ENST00000497815 EML4Q9HC35 981 aaKnown RBP11.34□□□□□ -0.59
CUX1-210ENST00000497815 ASCL3Q9NQ33 180 aa11.34□□□□□ -0.59
CUX1-210ENST00000497815 THSD1Q9NS62 852 aa11.34□□□□□ -0.59
CUX1-210ENST00000497815 FARSBQ9NSD9 589 aaKnown RBP11.34□□□□□ -0.59
CUX1-210ENST00000497815 CUTCQ9NTM9 273 aa11.34□□□□□ -0.59
CUX1-210ENST00000497815 TXLNGQ9NUQ3 528 aa11.34□□□□□ -0.59
CUX1-210ENST00000497815 DHCR7Q9UBM7 475 aaKnown RBP11.34□□□□□ -0.59
CUX1-210ENST00000497815 SNX6Q9UNH7 406 aa11.34□□□□□ -0.59
CUX1-210ENST00000497815 MRPS2Q9Y399 296 aaKnown RBP11.34□□□□□ -0.59
CUX1-210ENST00000497815 CNOT1A5YKK6 2376 aaKnown RBP11.33□□□□□ -0.6
CUX1-210ENST00000497815 FITM1A5D6W6 292 aa11.33□□□□□ -0.6
CUX1-210ENST00000497815 MAGEB17A8MXT2 336 aa11.33□□□□□ -0.6
CUX1-210ENST00000497815 CDRT15L2A8MXV6 281 aa11.33□□□□□ -0.6
CUX1-210ENST00000497815 TMEM233B4DJY2 109 aa11.33□□□□□ -0.6
CUX1-210ENST00000497815 SAP18O00422 153 aaKnown RBP11.33□□□□□ -0.6
CUX1-210ENST00000497815 MANBAO00462 879 aa11.33□□□□□ -0.6
CUX1-210ENST00000497815 TXNDC9O14530 226 aa11.33□□□□□ -0.6
CUX1-210ENST00000497815 NVLO15381 856 aaKnown RBP11.33□□□□□ -0.6
CUX1-210ENST00000497815 CPNE3O75131 537 aaKnown RBP11.33□□□□□ -0.6
CUX1-210ENST00000497815 CLEC3AO75596 197 aa11.33□□□□□ -0.6
CUX1-210ENST00000497815 MED26O95402 600 aa11.33□□□□□ -0.6
CUX1-210ENST00000497815 TGFB1P01137 390 aa11.33□□□□□ -0.6
CUX1-210ENST00000497815 PDYNP01213 254 aa11.33□□□□□ -0.6
CUX1-210ENST00000497815 ENO1P06733 434 aaKnown RBP11.33□□□□□ -0.6
CUX1-210ENST00000497815 GRK2P25098 689 aa11.33□□□□□ -0.6
CUX1-210ENST00000497815 HNRNPH1P31943 449 aaKnown RBP11.33□□□□□ -0.6
CUX1-210ENST00000497815 SERPINB5P36952 375 aa11.33□□□□□ -0.6
CUX1-210ENST00000497815 SLC1A6P48664 564 aa11.33□□□□□ -0.6
CUX1-210ENST00000497815 HTR6P50406 440 aa11.33□□□□□ -0.6
CUX1-210ENST00000497815 RAB8AP61006 207 aa11.33□□□□□ -0.6
CUX1-210ENST00000497815 RPS13P62277 151 aaKnown RBP11.33□□□□□ -0.6
CUX1-210ENST00000497815 SNRPNP63162 240 aaKnown RBP11.33□□□□□ -0.6
CUX1-210ENST00000497815 PHEXP78562 749 aa11.33□□□□□ -0.6
CUX1-210ENST00000497815 BST1Q10588 318 aa11.33□□□□□ -0.6
CUX1-210ENST00000497815 PWP1Q13610 501 aa11.33□□□□□ -0.6
CUX1-210ENST00000497815 FAM214AQ32MH5 1076 aa11.33□□□□□ -0.6
CUX1-210ENST00000497815 SH2D4BQ5SQS7 431 aa11.33□□□□□ -0.6
CUX1-210ENST00000497815 SCIMPQ6UWF3 145 aa11.33□□□□□ -0.6
CUX1-210ENST00000497815 TRIM42Q8IWZ5 723 aa11.33□□□□□ -0.6
CUX1-210ENST00000497815 GALNT6Q8NCL4 622 aa11.33□□□□□ -0.6
CUX1-210ENST00000497815 WDR20Q8TBZ3 569 aa11.33□□□□□ -0.6
CUX1-210ENST00000497815 NT5CQ8TCD5 201 aa11.33□□□□□ -0.6
CUX1-210ENST00000497815 ZNF473Q8WTR7 871 aaKnown RBP11.33□□□□□ -0.6
CUX1-210ENST00000497815 SELENOMQ8WWX9 145 aa11.33□□□□□ -0.6
CUX1-210ENST00000497815 C10orf90Q96M02 699 aa11.33□□□□□ -0.6
CUX1-210ENST00000497815 F2RL3Q96RI0 385 aa11.33□□□□□ -0.6
CUX1-210ENST00000497815 SLC29A3Q9BZD2 475 aa11.33□□□□□ -0.6
CUX1-210ENST00000497815 C20orf27Q9GZN8 174 aa11.33□□□□□ -0.6
CUX1-210ENST00000497815 OR51B5Q9H339 312 aa11.33□□□□□ -0.6
CUX1-210ENST00000497815 MANSC1Q9H8J5 431 aa11.33□□□□□ -0.6
CUX1-210ENST00000497815 DMRT3Q9NQL9 472 aa11.33□□□□□ -0.6
CUX1-210ENST00000497815 SRPK3Q9UPE1 567 aa11.33□□□□□ -0.6
CUX1-210ENST00000497815 PCDHB3Q9Y5E6 796 aa11.33□□□□□ -0.6
CUX1-210ENST00000497815 PCDHGA7Q9Y5G6 932 aa11.33□□□□□ -0.6
CUX1-210ENST00000497815 PCM1Q15154 2024 aa11.33□□□□□ -0.6
CUX1-210ENST00000497815 A0A0A6YYC8 382 aaPredicted RBP11.32□□□□□ -0.6
CUX1-210ENST00000497815 A0A0G2JN53 185 aa11.32□□□□□ -0.6
CUX1-210ENST00000497815 LRIT2A6NDA9 550 aa11.32□□□□□ -0.6
CUX1-210ENST00000497815 I3L1I5 382 aaPredicted RBP11.32□□□□□ -0.6
CUX1-210ENST00000497815 AZIN1O14977 448 aa11.32□□□□□ -0.6
CUX1-210ENST00000497815 DXOO77932 396 aaKnown RBP11.32□□□□□ -0.6
CUX1-210ENST00000497815 B3GALT4O96024 378 aa11.32□□□□□ -0.6
CUX1-210ENST00000497815 KRT6AP02538 564 aa11.32□□□□□ -0.6
CUX1-210ENST00000497815 KRT6BP04259 564 aa11.32□□□□□ -0.6
CUX1-210ENST00000497815 SERPINA6P08185 405 aa11.32□□□□□ -0.6
CUX1-210ENST00000497815 ZNF888P0CJ79 500 aaPredicted RBP11.32□□□□□ -0.6
CUX1-210ENST00000497815 UROSP10746 265 aa11.32□□□□□ -0.6
CUX1-210ENST00000497815 IL1RNP18510 177 aa11.32□□□□□ -0.6
CUX1-210ENST00000497815 GSTM2P28161 218 aa11.32□□□□□ -0.6
CUX1-210ENST00000497815 SERPINB1P30740 379 aa11.32□□□□□ -0.6
CUX1-210ENST00000497815 PIK3CBP42338 1070 aa11.32□□□□□ -0.6
CUX1-210ENST00000497815 KRT6CP48668 564 aa11.32□□□□□ -0.6
CUX1-210ENST00000497815 PLA2G16P53816 162 aa11.32□□□□□ -0.6
CUX1-210ENST00000497815 ARSFP54793 590 aa11.32□□□□□ -0.6
CUX1-210ENST00000497815 SHC2P98077 582 aa11.32□□□□□ -0.6
CUX1-210ENST00000497815 HYAL2Q12891 473 aa11.32□□□□□ -0.6
CUX1-210ENST00000497815 SLC9A5Q14940 896 aa11.32□□□□□ -0.6
CUX1-210ENST00000497815 ABRAXAS2Q15018 415 aa11.32□□□□□ -0.6
CUX1-210ENST00000497815 NDUFA9Q16795 377 aa11.32□□□□□ -0.6
CUX1-210ENST00000497815 MUM1Q2TAK8 710 aa11.32□□□□□ -0.6
CUX1-210ENST00000497815 ATG16L1Q676U5 607 aa11.32□□□□□ -0.6
CUX1-210ENST00000497815 TMEM214Q6NUQ4 689 aaKnown RBP11.32□□□□□ -0.6
CUX1-210ENST00000497815 IGF2-ASQ6U949 168 aa11.32□□□□□ -0.6
CUX1-210ENST00000497815 C6orf15Q6UXA7 325 aaPredicted RBP11.32□□□□□ -0.6
CUX1-210ENST00000497815 PRSS41Q7RTY9 318 aa11.32□□□□□ -0.6
CUX1-210ENST00000497815 ARFGAP2Q8N6H7 521 aa11.32□□□□□ -0.6
CUX1-210ENST00000497815 OR9A4Q8NGU2 314 aa11.32□□□□□ -0.6
CUX1-210ENST00000497815 LRRC8CQ8TDW0 803 aa11.32□□□□□ -0.6
CUX1-210ENST00000497815 ZNF75CPQ92670 426 aaPredicted RBP11.32□□□□□ -0.6
CUX1-210ENST00000497815 CMTM7Q96FZ5 175 aa11.32□□□□□ -0.6
CUX1-210ENST00000497815 MS4A8Q9BY19 250 aa11.32□□□□□ -0.6
CUX1-210ENST00000497815 SLC6A16Q9GZN6 736 aa11.32□□□□□ -0.6
CUX1-210ENST00000497815 AICDAQ9GZX7 198 aa11.32□□□□□ -0.6
CUX1-210ENST00000497815 ADGRE2Q9UHX3 823 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms