RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 TRAM1L1Q8N609 369 aa17.28■□□□□ 0.36
VIM-206ENST00000487938 DYNC2LI1Q8TCX1 351 aa17.28■□□□□ 0.36
VIM-206ENST00000487938 BTN2A2Q8WVV5 523 aa17.28■□□□□ 0.36
VIM-206ENST00000487938 ATL1Q8WXF7 558 aa17.28■□□□□ 0.36
VIM-206ENST00000487938 LGALS12Q96DT0 336 aa17.28■□□□□ 0.36
VIM-206ENST00000487938 FEVQ99581 238 aa17.28■□□□□ 0.36
VIM-206ENST00000487938 DOHHQ9BU89 302 aa17.28■□□□□ 0.36
VIM-206ENST00000487938 BRF2Q9HAW0 419 aa17.28■□□□□ 0.36
VIM-206ENST00000487938 OGDHLQ9ULD0 1010 aa17.28■□□□□ 0.36
VIM-206ENST00000487938 RNF6Q9Y252 685 aa17.28■□□□□ 0.36
VIM-206ENST00000487938 PCDHGB3Q9Y5G1 929 aa17.28■□□□□ 0.36
VIM-206ENST00000487938 NPC1O15118 1278 aa17.27■□□□□ 0.36
VIM-206ENST00000487938 ZSCAN9O15535 394 aaPredicted RBP17.27■□□□□ 0.36
VIM-206ENST00000487938 CATP04040 527 aaKnown RBP17.27■□□□□ 0.36
VIM-206ENST00000487938 CTSLP07711 333 aa17.27■□□□□ 0.36
VIM-206ENST00000487938 CDH3P22223 829 aa17.27■□□□□ 0.36
VIM-206ENST00000487938 ASMTP46597 345 aa17.27■□□□□ 0.36
VIM-206ENST00000487938 C21orf58P58505 322 aa17.27■□□□□ 0.36
VIM-206ENST00000487938 MC1RQ01726 317 aa17.27■□□□□ 0.36
VIM-206ENST00000487938 MVKQ03426 396 aa17.27■□□□□ 0.36
VIM-206ENST00000487938 KCNC4Q03721 635 aa17.27■□□□□ 0.36
VIM-206ENST00000487938 ZNF33BQ06732 778 aa17.27■□□□□ 0.36
VIM-206ENST00000487938 TMEM115Q12893 351 aaPredicted RBP17.27■□□□□ 0.36
VIM-206ENST00000487938 INAQ16352 499 aa17.27■□□□□ 0.36
VIM-206ENST00000487938 EPYCQ99645 322 aa17.27■□□□□ 0.36
VIM-206ENST00000487938 NEURL2Q9BR09 285 aa17.27■□□□□ 0.36
VIM-206ENST00000487938 WDR12Q9GZL7 423 aaKnown RBP17.27■□□□□ 0.36
VIM-206ENST00000487938 ASAH2Q9NR71 780 aa17.27■□□□□ 0.36
VIM-206ENST00000487938 GPATCH2Q9NW75 528 aa17.27■□□□□ 0.36
VIM-206ENST00000487938 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP17.27■□□□□ 0.36
VIM-206ENST00000487938 TNFRSF11BO00300 401 aa17.27■□□□□ 0.35
VIM-206ENST00000487938 KPNA4O00629 521 aaPredicted RBP17.27■□□□□ 0.35
VIM-206ENST00000487938 BMP4P12644 408 aa17.27■□□□□ 0.35
VIM-206ENST00000487938 C21orf33P30042 268 aaPredicted RBP17.27■□□□□ 0.35
VIM-206ENST00000487938 VEGFBP49765 207 aa17.27■□□□□ 0.35
VIM-206ENST00000487938 SELENOWP63302 87 aa17.27■□□□□ 0.35
VIM-206ENST00000487938 ANXA8L1Q5VT79 327 aa17.27■□□□□ 0.35
VIM-206ENST00000487938 IRF7Q92985 503 aa17.27■□□□□ 0.35
VIM-206ENST00000487938 COQ8BQ96D53 544 aa17.27■□□□□ 0.35
VIM-206ENST00000487938 CCM2Q9BSQ5 444 aa17.27■□□□□ 0.35
VIM-206ENST00000487938 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP17.27■□□□□ 0.35
VIM-206ENST00000487938 RLIMQ9NVW2 624 aa17.27■□□□□ 0.35
VIM-206ENST00000487938 NDUFAF4Q9P032 175 aa17.27■□□□□ 0.35
VIM-206ENST00000487938 SH2B3Q9UQQ2 575 aa17.27■□□□□ 0.35
VIM-206ENST00000487938 SLC5A10A0PJK1 596 aa17.26■□□□□ 0.35
VIM-206ENST00000487938 WASH3PC4AMC7 463 aa17.26■□□□□ 0.35
VIM-206ENST00000487938 ATG13O75143 517 aa17.26■□□□□ 0.35
VIM-206ENST00000487938 XPAP23025 273 aaPredicted RBP17.26■□□□□ 0.35
VIM-206ENST00000487938 TIA1P31483 386 aaKnown RBP eCLIP17.26■□□□□ 0.351e-19■■■■□ 20.4
VIM-206ENST00000487938 HBA1P69905 142 aa17.26■□□□□ 0.35
VIM-206ENST00000487938 ZNF284Q2VY69 593 aa17.26■□□□□ 0.35
VIM-206ENST00000487938 PAGE2Q7Z2X7 111 aa17.26■□□□□ 0.35
VIM-206ENST00000487938 P3H2Q8IVL5 708 aa17.26■□□□□ 0.35
VIM-206ENST00000487938 C11orf65Q8NCR3 313 aa17.26■□□□□ 0.35
VIM-206ENST00000487938 KREMEN2Q8NCW0 462 aa17.26■□□□□ 0.35
VIM-206ENST00000487938 OR56A3Q8NH54 315 aa17.26■□□□□ 0.35
VIM-206ENST00000487938 STARD8Q92502 1023 aa17.26■□□□□ 0.35
VIM-206ENST00000487938 PROX1Q92786 737 aa17.26■□□□□ 0.35
VIM-206ENST00000487938 CIDECQ96AQ7 238 aaPredicted RBP17.26■□□□□ 0.35
VIM-206ENST00000487938 TAMM41Q96BW9 452 aa17.26■□□□□ 0.35
VIM-206ENST00000487938 HRASLS5Q96KN8 279 aa17.26■□□□□ 0.35
VIM-206ENST00000487938 PITX2Q99697 317 aa17.26■□□□□ 0.35
VIM-206ENST00000487938 BCL7BQ9BQE9 202 aa17.26■□□□□ 0.35
VIM-206ENST00000487938 ZSCAN5AQ9BUG6 496 aa17.26■□□□□ 0.35
VIM-206ENST00000487938 TMEM121BQ9BXQ6 578 aaPredicted RBP17.26■□□□□ 0.35
VIM-206ENST00000487938 RNF208Q9H0X6 261 aa17.26■□□□□ 0.35
VIM-206ENST00000487938 RC3H2Q9HBD1 1191 aaKnown RBP17.26■□□□□ 0.35
VIM-206ENST00000487938 CCNB1IP1Q9NPC3 277 aa17.26■□□□□ 0.35
VIM-206ENST00000487938 ITM2BQ9Y287 266 aa17.26■□□□□ 0.35
VIM-206ENST00000487938 KIAA1671Q9BY89 1806 aa17.26■□□□□ 0.35
VIM-206ENST00000487938 OR2A25A4D2G3 310 aa17.26■□□□□ 0.35
VIM-206ENST00000487938 CXCL14O95715 111 aa17.26■□□□□ 0.35
VIM-206ENST00000487938 C6orf47O95873 294 aa17.26■□□□□ 0.35
VIM-206ENST00000487938 TGFB1P01137 390 aa17.26■□□□□ 0.35
VIM-206ENST00000487938 IMPDH2P12268 514 aa17.26■□□□□ 0.35
VIM-206ENST00000487938 HLA-EP13747 358 aa17.26■□□□□ 0.35
VIM-206ENST00000487938 HSD3B1P14060 373 aa17.26■□□□□ 0.35
VIM-206ENST00000487938 ZNF8P17098 575 aaPredicted RBP17.26■□□□□ 0.35
VIM-206ENST00000487938 HSD3B2P26439 372 aa17.26■□□□□ 0.35
VIM-206ENST00000487938 PCGF2P35227 344 aa17.26■□□□□ 0.35
VIM-206ENST00000487938 TGFBR2P37173 567 aa17.26■□□□□ 0.35
VIM-206ENST00000487938 DCDC1P59894 354 aa17.26■□□□□ 0.35
VIM-206ENST00000487938 MEF2AQ02078 507 aaPredicted RBP17.26■□□□□ 0.35
VIM-206ENST00000487938 PRSS36Q5K4E3 855 aa17.26■□□□□ 0.35
VIM-206ENST00000487938 LY6G5CQ5SRR4 150 aa17.26■□□□□ 0.35
VIM-206ENST00000487938 SLCO4C1Q6ZQN7 724 aa17.26■□□□□ 0.35
VIM-206ENST00000487938 SYTL1Q8IYJ3 562 aa17.26■□□□□ 0.35
VIM-206ENST00000487938 SLC5A8Q8N695 610 aa17.26■□□□□ 0.35
VIM-206ENST00000487938 OR6Q1Q8NGQ2 317 aa17.26■□□□□ 0.35
VIM-206ENST00000487938 S100ZQ8WXG8 99 aa17.26■□□□□ 0.35
VIM-206ENST00000487938 GLYATL1Q969I3 302 aa17.26■□□□□ 0.35
VIM-206ENST00000487938 TIFAQ96CG3 184 aa17.26■□□□□ 0.35
VIM-206ENST00000487938 COPS4Q9BT78 406 aa17.26■□□□□ 0.35
VIM-206ENST00000487938 ACSL6Q9UKU0 697 aa17.26■□□□□ 0.35
VIM-206ENST00000487938 PADI2Q9Y2J8 665 aa17.26■□□□□ 0.35
VIM-206ENST00000487938 LYVE1Q9Y5Y7 322 aa17.26■□□□□ 0.35
VIM-206ENST00000487938 KCNE2Q9Y6J6 123 aa17.26■□□□□ 0.35
VIM-206ENST00000487938 CXorf51AA0A1B0GTR3 108 aa17.25■□□□□ 0.35
VIM-206ENST00000487938 KRBA1A5PL33 1030 aa17.25■□□□□ 0.35
VIM-206ENST00000487938 FGF18O76093 207 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms