RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 CPNE7Q9UBL6 633 aa13.61□□□□□ -0.23
CUX1-209ENST00000487284 CSNK1G3Q9Y6M4 447 aa13.61□□□□□ -0.23
CUX1-209ENST00000487284 C15orf38-AP3S2A0A0A6YYH1 394 aa13.6□□□□□ -0.23
CUX1-209ENST00000487284 KIR2DS5A0A0G2JLQ3 304 aa13.6□□□□□ -0.23
CUX1-209ENST00000487284 A0A0G2JNG1 304 aa13.6□□□□□ -0.23
CUX1-209ENST00000487284 LNP1A1A4G5 178 aa13.6□□□□□ -0.23
CUX1-209ENST00000487284 KIR2DS3K7RE56 304 aa13.6□□□□□ -0.23
CUX1-209ENST00000487284 ACOT8O14734 319 aa13.6□□□□□ -0.23
CUX1-209ENST00000487284 NOBOXO60393 691 aa13.6□□□□□ -0.23
CUX1-209ENST00000487284 DFNA5O60443 496 aa13.6□□□□□ -0.23
CUX1-209ENST00000487284 BCAS2O75934 225 aaPredicted RBP13.6□□□□□ -0.23
CUX1-209ENST00000487284 MYO1DO94832 1006 aa13.6□□□□□ -0.23
CUX1-209ENST00000487284 PGRP06401 933 aa13.6□□□□□ -0.23
CUX1-209ENST00000487284 CXCR2P25025 360 aa13.6□□□□□ -0.23
CUX1-209ENST00000487284 SERPINB1P30740 379 aa13.6□□□□□ -0.23
CUX1-209ENST00000487284 SHMT2P34897 504 aa13.6□□□□□ -0.23
CUX1-209ENST00000487284 CCR8P51685 355 aa13.6□□□□□ -0.23
CUX1-209ENST00000487284 UBE2IP63279 158 aaKnown RBP13.6□□□□□ -0.23
CUX1-209ENST00000487284 RAE1P78406 368 aaKnown RBP13.6□□□□□ -0.23
CUX1-209ENST00000487284 PHEXP78562 749 aa13.6□□□□□ -0.23
CUX1-209ENST00000487284 MS4A2Q01362 244 aa13.6□□□□□ -0.23
CUX1-209ENST00000487284 PRDX1Q06830 199 aaKnown RBP13.6□□□□□ -0.23
CUX1-209ENST00000487284 FLOT2Q14254 428 aa13.6□□□□□ -0.23
CUX1-209ENST00000487284 TRIM25Q14258 630 aaKnown RBP13.6□□□□□ -0.23
CUX1-209ENST00000487284 CAPRIN1Q14444 709 aaKnown RBP13.6□□□□□ -0.23
CUX1-209ENST00000487284 KIR2DS5Q14953 304 aa13.6□□□□□ -0.23
CUX1-209ENST00000487284 DLEU7Q6UYE1 221 aa13.6□□□□□ -0.23
CUX1-209ENST00000487284 VN1R5Q7Z5H4 357 aa13.6□□□□□ -0.23
CUX1-209ENST00000487284 ARPINQ7Z6K5 226 aa13.6□□□□□ -0.23
CUX1-209ENST00000487284 DHDDSQ86SQ9 333 aa13.6□□□□□ -0.23
CUX1-209ENST00000487284 TRIM48Q8IWZ4 208 aa13.6□□□□□ -0.23
CUX1-209ENST00000487284 KIAA2013Q8IYS2 634 aa13.6□□□□□ -0.23
CUX1-209ENST00000487284 TMEM125Q96AQ2 219 aa13.6□□□□□ -0.23
CUX1-209ENST00000487284 BCAP29Q9UHQ4 241 aa13.6□□□□□ -0.23
CUX1-209ENST00000487284 ADGRE2Q9UHX3 823 aa13.6□□□□□ -0.23
CUX1-209ENST00000487284 L3MBTL1Q9Y468 752 aa13.6□□□□□ -0.23
CUX1-209ENST00000487284 PCDHB11Q9Y5F2 797 aa13.6□□□□□ -0.23
CUX1-209ENST00000487284 PCDHA9Q9Y5H5 950 aa13.6□□□□□ -0.23
CUX1-209ENST00000487284 YKT6O15498 198 aa13.59□□□□□ -0.23
CUX1-209ENST00000487284 VIPP01282 170 aa13.59□□□□□ -0.23
CUX1-209ENST00000487284 HSD17B1P14061 328 aa13.59□□□□□ -0.23
CUX1-209ENST00000487284 PRPS1L1P21108 318 aa13.59□□□□□ -0.23
CUX1-209ENST00000487284 TIA1P31483 386 aaKnown RBP eCLIP13.59□□□□□ -0.23
CUX1-209ENST00000487284 MAZP56270 477 aaKnown RBP13.59□□□□□ -0.23
CUX1-209ENST00000487284 TRAP1Q12931 704 aaKnown RBP13.59□□□□□ -0.23
CUX1-209ENST00000487284 PWP1Q13610 501 aa13.59□□□□□ -0.23
CUX1-209ENST00000487284 DPY19L1Q2PZI1 675 aa13.59□□□□□ -0.23
CUX1-209ENST00000487284 C6orf132Q5T0Z8 1188 aa13.59□□□□□ -0.23
CUX1-209ENST00000487284 OGFOD3Q6PK18 319 aa13.59□□□□□ -0.23
CUX1-209ENST00000487284 MSANTD1Q6ZTZ1 278 aa13.59□□□□□ -0.23
CUX1-209ENST00000487284 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.59□□□□□ -0.23
CUX1-209ENST00000487284 FAM156AQ8NDB6 213 aa13.59□□□□□ -0.23
CUX1-209ENST00000487284 JPH3Q8WXH2 748 aaPredicted RBP13.59□□□□□ -0.23
CUX1-209ENST00000487284 EGLN2Q96KS0 407 aa13.59□□□□□ -0.23
CUX1-209ENST00000487284 EBPLQ9BY08 206 aa13.59□□□□□ -0.23
CUX1-209ENST00000487284 TWSG1Q9GZX9 223 aa13.59□□□□□ -0.23
CUX1-209ENST00000487284 POT1Q9NUX5 634 aa13.59□□□□□ -0.23
CUX1-209ENST00000487284 CMTM6Q9NX76 183 aa13.59□□□□□ -0.23
CUX1-209ENST00000487284 MAPRE3Q9UPY8 281 aa13.59□□□□□ -0.23
CUX1-209ENST00000487284 NEUROG3Q9Y4Z2 214 aa13.59□□□□□ -0.23
CUX1-209ENST00000487284 PEBP1P30086 187 aaKnown RBP13.58□□□□□ -0.23
CUX1-209ENST00000487284 MSX2P35548 267 aaPredicted RBP13.58□□□□□ -0.23
CUX1-209ENST00000487284 NBL1P41271 181 aa13.58□□□□□ -0.23
CUX1-209ENST00000487284 ASMTP46597 345 aa13.58□□□□□ -0.23
CUX1-209ENST00000487284 ATXN3P54252 364 aaPredicted RBP13.58□□□□□ -0.23
CUX1-209ENST00000487284 AP2B1P63010 937 aa13.58□□□□□ -0.23
CUX1-209ENST00000487284 PHC1P78364 1004 aa13.58□□□□□ -0.23
CUX1-209ENST00000487284 CSNK1G2P78368 415 aa13.58□□□□□ -0.23
CUX1-209ENST00000487284 ABATP80404 500 aa13.58□□□□□ -0.23
CUX1-209ENST00000487284 HHEXQ03014 270 aa13.58□□□□□ -0.23
CUX1-209ENST00000487284 GPR18Q14330 331 aa13.58□□□□□ -0.23
CUX1-209ENST00000487284 SF3A2Q15428 464 aaKnown RBP13.58□□□□□ -0.23
CUX1-209ENST00000487284 C17orf82Q86X59 251 aaPredicted RBP13.58□□□□□ -0.23
CUX1-209ENST00000487284 ARL14Q8N4G2 192 aa13.58□□□□□ -0.23
CUX1-209ENST00000487284 GPR156Q8NFN8 814 aa13.58□□□□□ -0.23
CUX1-209ENST00000487284 STARD8Q92502 1023 aa13.58□□□□□ -0.23
CUX1-209ENST00000487284 GTF2H4Q92759 462 aa13.58□□□□□ -0.23
CUX1-209ENST00000487284 IRF2BPLQ9H1B7 796 aa13.58□□□□□ -0.23
CUX1-209ENST00000487284 S100A14Q9HCY8 104 aa13.58□□□□□ -0.23
CUX1-209ENST00000487284 OR6C2Q9NZP2 312 aa13.58□□□□□ -0.23
CUX1-209ENST00000487284 SLAMF8Q9P0V8 285 aa13.58□□□□□ -0.23
CUX1-209ENST00000487284 MAN2B2Q9Y2E5 1009 aa13.58□□□□□ -0.23
CUX1-209ENST00000487284 NUP214P35658 2090 aaPredicted RBP13.58□□□□□ -0.24
CUX1-209ENST00000487284 IGKV1-8A0A0C4DH67 115 aa13.58□□□□□ -0.24
CUX1-209ENST00000487284 H7BY64 318 aa13.58□□□□□ -0.24
CUX1-209ENST00000487284 SEMA3DO95025 777 aa13.58□□□□□ -0.24
CUX1-209ENST00000487284 KCNH1O95259 989 aa13.58□□□□□ -0.24
CUX1-209ENST00000487284 TGFB1P01137 390 aa13.58□□□□□ -0.24
CUX1-209ENST00000487284 ANXA4P09525 319 aaPredicted RBP13.58□□□□□ -0.24
CUX1-209ENST00000487284 ZNF806P0C7X5 589 aa13.58□□□□□ -0.24
CUX1-209ENST00000487284 TCN1P20061 433 aaPredicted RBP13.58□□□□□ -0.24
CUX1-209ENST00000487284 PTX3P26022 381 aaPredicted RBP13.58□□□□□ -0.24
CUX1-209ENST00000487284 S100A3P33764 101 aa13.58□□□□□ -0.24
CUX1-209ENST00000487284 GCKP35557 465 aa13.58□□□□□ -0.24
CUX1-209ENST00000487284 ERFP50548 548 aa13.58□□□□□ -0.24
CUX1-209ENST00000487284 HNRNPFP52597 415 aaKnown RBP13.58□□□□□ -0.24
CUX1-209ENST00000487284 EEFSECP57772 596 aaKnown RBP13.58□□□□□ -0.24
CUX1-209ENST00000487284 SPEM2Q0P670 501 aa13.58□□□□□ -0.24
CUX1-209ENST00000487284 MAPKAPK3Q16644 382 aa13.58□□□□□ -0.24
CUX1-209ENST00000487284 C14orf28Q4W4Y0 310 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms