RNA–Protein interactions for RNA: ENST00000486618.1

HDAC3-209, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 711 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-209ENST00000486618 ACSS2Q9NR19 701 aa6.57□□□□□ -1.36
HDAC3-209ENST00000486618 C19orf73Q9NVV2 129 aa6.57□□□□□ -1.36
HDAC3-209ENST00000486618 SIDT1Q9NXL6 827 aaKnown RBP6.57□□□□□ -1.36
HDAC3-209ENST00000486618 DNAJB9Q9UBS3 223 aa6.57□□□□□ -1.36
HDAC3-209ENST00000486618 BAIAP2L1Q9UHR4 511 aa6.57□□□□□ -1.36
HDAC3-209ENST00000486618 LNPEPQ9UIQ6 1025 aa6.57□□□□□ -1.36
HDAC3-209ENST00000486618 RWDD2AQ9UIY3 292 aa6.57□□□□□ -1.36
HDAC3-209ENST00000486618 AJAP1Q9UKB5 411 aaPredicted RBP6.57□□□□□ -1.36
HDAC3-209ENST00000486618 SNX6Q9UNH7 406 aa6.57□□□□□ -1.36
HDAC3-209ENST00000486618 NAALAD2Q9Y3Q0 740 aa6.57□□□□□ -1.36
HDAC3-209ENST00000486618 ZNF451Q9Y4E5 1061 aa6.57□□□□□ -1.36
HDAC3-209ENST00000486618 PLEKHM1Q9Y4G2 1056 aa6.57□□□□□ -1.36
HDAC3-209ENST00000486618 TIMM22Q9Y584 194 aa6.57□□□□□ -1.36
HDAC3-209ENST00000486618 PMF1-BGLAPU3KQ54 211 aa6.57□□□□□ -1.36
HDAC3-209ENST00000486618 LRBAP50851 2863 aa6.56□□□□□ -1.36
HDAC3-209ENST00000486618 MN1Q10571 1320 aaPredicted RBP6.56□□□□□ -1.36
HDAC3-209ENST00000486618 CELSR2Q9HCU4 2923 aa6.56□□□□□ -1.36
HDAC3-209ENST00000486618 HEATR9A2RTY3 570 aa6.56□□□□□ -1.36
HDAC3-209ENST00000486618 LILRA5A6NI73 299 aa6.56□□□□□ -1.36
HDAC3-209ENST00000486618 PTGES3LE9PB15 166 aa6.56□□□□□ -1.36
HDAC3-209ENST00000486618 SYT5O00445 386 aa6.56□□□□□ -1.36
HDAC3-209ENST00000486618 HTRA2O43464 458 aaPredicted RBP6.56□□□□□ -1.36
HDAC3-209ENST00000486618 KRT86O43790 486 aa6.56□□□□□ -1.36
HDAC3-209ENST00000486618 DNAJB5O75953 348 aa6.56□□□□□ -1.36
HDAC3-209ENST00000486618 IPO13O94829 963 aaKnown RBP6.56□□□□□ -1.36
HDAC3-209ENST00000486618 CLDN1O95832 211 aa6.56□□□□□ -1.36
HDAC3-209ENST00000486618 LDLRP01130 860 aa6.56□□□□□ -1.36
HDAC3-209ENST00000486618 C9P02748 559 aa6.56□□□□□ -1.36
HDAC3-209ENST00000486618 CYP1A1P04798 512 aaPredicted RBP6.56□□□□□ -1.36
HDAC3-209ENST00000486618 MYZAPP0CAP1 466 aa6.56□□□□□ -1.36
HDAC3-209ENST00000486618 UBL4AP11441 157 aa6.56□□□□□ -1.36
HDAC3-209ENST00000486618 ZNF28P17035 718 aa6.56□□□□□ -1.36
HDAC3-209ENST00000486618 HSPA9P38646 679 aaKnown RBP6.56□□□□□ -1.36
HDAC3-209ENST00000486618 HTR2BP41595 481 aa6.56□□□□□ -1.36
HDAC3-209ENST00000486618 PITPNBP48739 271 aa6.56□□□□□ -1.36
HDAC3-209ENST00000486618 CCL11P51671 97 aa6.56□□□□□ -1.36
HDAC3-209ENST00000486618 VBP1P61758 197 aa6.56□□□□□ -1.36
HDAC3-209ENST00000486618 RPS15P62841 145 aaKnown RBP6.56□□□□□ -1.36
HDAC3-209ENST00000486618 IL10RBQ08334 325 aa6.56□□□□□ -1.36
HDAC3-209ENST00000486618 MRPL49Q13405 166 aaKnown RBP6.56□□□□□ -1.36
HDAC3-209ENST00000486618 CHRNA6Q15825 494 aa6.56□□□□□ -1.36
HDAC3-209ENST00000486618 MAN2A1Q16706 1144 aa6.56□□□□□ -1.36
HDAC3-209ENST00000486618 UGT8Q16880 541 aa6.56□□□□□ -1.36
HDAC3-209ENST00000486618 KLHDC7AQ5VTJ3 777 aa6.56□□□□□ -1.36
HDAC3-209ENST00000486618 C1QL3Q5VWW1 255 aa6.56□□□□□ -1.36
HDAC3-209ENST00000486618 PAPD7Q5XG87 772 aaKnown RBP6.56□□□□□ -1.36
HDAC3-209ENST00000486618 WDR59Q6PJI9 974 aa6.56□□□□□ -1.36
HDAC3-209ENST00000486618 ISLR2Q6UXK2 745 aa6.56□□□□□ -1.36
HDAC3-209ENST00000486618 TRIM72Q6ZMU5 477 aa6.56□□□□□ -1.36
HDAC3-209ENST00000486618 ZNF704Q6ZNC4 412 aaPredicted RBP6.56□□□□□ -1.36
HDAC3-209ENST00000486618 USP45Q70EL2 814 aa6.56□□□□□ -1.36
HDAC3-209ENST00000486618 MARK2Q7KZI7 788 aaKnown RBP6.56□□□□□ -1.36
HDAC3-209ENST00000486618 SZRD1Q7Z422 152 aa6.56□□□□□ -1.36
HDAC3-209ENST00000486618 REC114Q7Z4M0 266 aa6.56□□□□□ -1.36
HDAC3-209ENST00000486618 HSD11B1LQ7Z5J1 315 aa6.56□□□□□ -1.36
HDAC3-209ENST00000486618 TMEM135Q86UB9 458 aa6.56□□□□□ -1.36
HDAC3-209ENST00000486618 PPP1R3BQ86XI6 285 aa6.56□□□□□ -1.36
HDAC3-209ENST00000486618 TCAIMQ8N3R3 496 aa6.56□□□□□ -1.36
HDAC3-209ENST00000486618 CLRN3Q8NCR9 226 aa6.56□□□□□ -1.36
HDAC3-209ENST00000486618 EXD1Q8NHP7 514 aa6.56□□□□□ -1.36
HDAC3-209ENST00000486618 CALML6Q8TD86 181 aa6.56□□□□□ -1.36
HDAC3-209ENST00000486618 INPP5DQ92835 1189 aa6.56□□□□□ -1.36
HDAC3-209ENST00000486618 PEX13Q92968 403 aa6.56□□□□□ -1.36
HDAC3-209ENST00000486618 UBE2FQ969M7 185 aa6.56□□□□□ -1.36
HDAC3-209ENST00000486618 PPP1R14AQ96A00 147 aa6.56□□□□□ -1.36
HDAC3-209ENST00000486618 TMIGD2Q96BF3 282 aa6.56□□□□□ -1.36
HDAC3-209ENST00000486618 AP2M1Q96CW1 435 aa6.56□□□□□ -1.36
HDAC3-209ENST00000486618 SCRN2Q96FV2 425 aa6.56□□□□□ -1.36
HDAC3-209ENST00000486618 CELF6Q96J87 481 aaKnown RBP6.56□□□□□ -1.36
HDAC3-209ENST00000486618 C9orf72Q96LT7 481 aa6.56□□□□□ -1.36
HDAC3-209ENST00000486618 Q96M66 194 aa6.56□□□□□ -1.36
HDAC3-209ENST00000486618 OR6C1Q96RD1 312 aa6.56□□□□□ -1.36
HDAC3-209ENST00000486618 CCT7Q99832 543 aa6.56□□□□□ -1.36
HDAC3-209ENST00000486618 C11orf70Q9BRQ4 267 aa6.56□□□□□ -1.36
HDAC3-209ENST00000486618 ERP44Q9BS26 406 aa6.56□□□□□ -1.36
HDAC3-209ENST00000486618 NUP85Q9BW27 656 aa6.56□□□□□ -1.36
HDAC3-209ENST00000486618 GPR87Q9BY21 358 aa6.56□□□□□ -1.36
HDAC3-209ENST00000486618 STK33Q9BYT3 514 aa6.56□□□□□ -1.36
HDAC3-209ENST00000486618 SLC39A8Q9C0K1 460 aa6.56□□□□□ -1.36
HDAC3-209ENST00000486618 MLXIPLQ9NP71 852 aa6.56□□□□□ -1.36
HDAC3-209ENST00000486618 NRIP3Q9NQ35 241 aa6.56□□□□□ -1.36
HDAC3-209ENST00000486618 LHX9Q9NQ69 397 aa6.56□□□□□ -1.36
HDAC3-209ENST00000486618 NUDT15Q9NV35 164 aa6.56□□□□□ -1.36
HDAC3-209ENST00000486618 TMEM160Q9NX00 188 aa6.56□□□□□ -1.36
HDAC3-209ENST00000486618 TAB2Q9NYJ8 693 aa6.56□□□□□ -1.36
HDAC3-209ENST00000486618 RCOR3Q9P2K3 495 aaPredicted RBP6.56□□□□□ -1.36
HDAC3-209ENST00000486618 ZNHIT2Q9UHR6 403 aa6.56□□□□□ -1.36
HDAC3-209ENST00000486618 PAIP2BQ9ULR5 123 aaKnown RBP6.56□□□□□ -1.36
HDAC3-209ENST00000486618 FZD10Q9ULW2 581 aa6.56□□□□□ -1.36
HDAC3-209ENST00000486618 ZKSCAN5Q9Y2L8 839 aa6.56□□□□□ -1.36
HDAC3-209ENST00000486618 MDC1Q14676 2089 aaKnown RBP6.56□□□□□ -1.36
HDAC3-209ENST00000486618 ZNF106Q9H2Y7 1883 aaKnown RBP6.56□□□□□ -1.36
HDAC3-209ENST00000486618 CNTRLQ7Z7A1 2325 aa6.55□□□□□ -1.36
HDAC3-209ENST00000486618 CRYBG3Q68DQ2 2970 aa6.55□□□□□ -1.36
HDAC3-209ENST00000486618 ZNF503-AS2A6NEH8 195 aa6.55□□□□□ -1.36
HDAC3-209ENST00000486618 SIGLEC16A6NMB1 481 aa6.55□□□□□ -1.36
HDAC3-209ENST00000486618 GOLGA8MH3BSY2 632 aa6.55□□□□□ -1.36
HDAC3-209ENST00000486618 DFFAO00273 331 aa6.55□□□□□ -1.36
HDAC3-209ENST00000486618 EEF2KO00418 725 aaKnown RBP6.55□□□□□ -1.36
HDAC3-209ENST00000486618 HNRNPRO43390 633 aaKnown RBP6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms