RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 ZNF766Q5HY98 468 aa11.53□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 TUBA3EQ6PEY2 450 aa11.53□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 SBSNQ6UWP8 590 aa11.53□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 TMEM207Q6UWW9 146 aa11.53□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 GFRALQ6UXV0 394 aa11.53□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 BEST3Q8N1M1 668 aa11.53□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 ARMC10Q8N2F6 343 aa11.53□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 ZNF740Q8NDX6 193 aa11.53□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 OR5T3Q8NGG3 340 aa11.53□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 ELP5Q8TE02 316 aa11.53□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 FBXL8Q96CD0 374 aa11.53□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 LINGO1Q96FE5 620 aa11.53□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 SCMH1Q96GD3 660 aa11.53□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 SNF8Q96H20 258 aa11.53□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 SMIM10Q96HG1 83 aa11.53□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 MAGEB10Q96LZ2 347 aaPredicted RBP11.53□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 SIGLEC12Q96PQ1 595 aa11.53□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 WDR83Q9BRX9 315 aaKnown RBP11.53□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 TEKT2Q9UIF3 430 aa11.53□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 IKZF3Q9UKT9 509 aa11.53□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 SNX12Q9UMY4 172 aa11.53□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 ZNF835Q9Y2P0 537 aa11.53□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 VWA7Q9Y334 891 aa11.53□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 KLF2Q9Y5W3 355 aaPredicted RBP11.53□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 TRBC2A0A5B9 178 aa11.52□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 CTAGE15A4D2H0 777 aa11.52□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 UNC5CO95185 931 aa11.52□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 MYBL2P10244 700 aa11.52□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 GRK3P35626 688 aa11.52□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 SCTRP47872 440 aa11.52□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 CCR8P51685 355 aa11.52□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 IL2P60568 153 aa11.52□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 HYAL2Q12891 473 aa11.52□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 FRG1Q14331 258 aaKnown RBP11.52□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 USP10Q14694 798 aaKnown RBP11.52□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 NSDHLQ15738 373 aa11.52□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 MEP1AQ16819 746 aa11.52□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 PPP1R3AQ16821 1122 aa11.52□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 SFT2D3Q587I9 215 aa11.52□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 STEAP4Q687X5 459 aa11.52□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 Q6ZPB1 254 aaPredicted RBP11.52□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 CTAGE6Q86UF2 777 aa11.52□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 CRLF3Q8IUI8 442 aa11.52□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 LGI4Q8N135 537 aa11.52□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 MYO1HQ8N1T3 1032 aa11.52□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 SLC35F6Q8N357 371 aa11.52□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 NT5CQ8TCD5 201 aa11.52□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 THAP3Q8WTV1 239 aaPredicted RBP11.52□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 PYCR2Q96C36 320 aa11.52□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 CERS2Q96G23 380 aa11.52□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 CCDC120Q96HB5 630 aa11.52□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 OLFM1Q99784 485 aa11.52□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 MCMBPQ9BTE3 642 aa11.52□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 AICDAQ9GZX7 198 aa11.52□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 SPNS1Q9H2V7 528 aa11.52□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 TRIM45Q9H8W5 580 aaPredicted RBP11.52□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 CLK4Q9HAZ1 481 aaKnown RBP11.52□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 SLC17A6Q9P2U8 582 aa11.52□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 COPG2Q9UBF2 871 aa11.52□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 SEC14L3Q9UDX4 400 aa11.52□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 CORO1CQ9ULV4 474 aaPredicted RBP11.52□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 TEX264Q9Y6I9 313 aa11.52□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 ENO4A6NNW6 628 aa11.51□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 A8MUI8 341 aa11.51□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 CHST10O43529 356 aa11.51□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 NEURL1O76050 574 aa11.51□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 FHP07954 510 aa11.51□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 ENO2P09104 434 aaPredicted RBP11.51□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 HIST1H2AGP0C0S8 130 aaPredicted RBP11.51□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 SLC35G6P0C7Q6 338 aa11.51□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 ALOX12P18054 663 aa11.51□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 HIST1H2ADP20671 130 aa11.51□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 GRNP28799 593 aaKnown RBP11.51□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 AHRP35869 848 aa11.51□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 PMP22Q01453 160 aa11.51□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 MEF2AQ02078 507 aaPredicted RBP11.51□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 ABRAXAS2Q15018 415 aa11.51□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 CATSPEREQ5SY80 951 aa11.51□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 HECTD2Q5U5R9 776 aa11.51□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 FCRLBQ6BAA4 426 aa11.51□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 SPINK14Q6IE38 97 aa11.51□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 TRMT10BQ6PF06 316 aaKnown RBP11.51□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 PAPD4Q6PIY7 484 aaKnown RBP11.51□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 ZNF227Q86WZ6 799 aa11.51□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 SIAH3Q8IW03 269 aa11.51□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 CHERPQ8IWX8 916 aaKnown RBP11.51□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 PALM2Q8IXS6 379 aa11.51□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 ANKRD53Q8N9V6 530 aa11.51□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 NFAM1Q8NET5 270 aaPredicted RBP11.51□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 GABPB2Q8TAK5 448 aaPredicted RBP11.51□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 SUN3Q8TAQ9 357 aa11.51□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 ZCCHC10Q8TBK6 192 aa11.51□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 ADAMTS18Q8TE60 1221 aa11.51□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 UTP15Q8TED0 518 aaKnown RBP11.51□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 ANKRD7Q92527 254 aa11.51□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 TSLPQ969D9 159 aa11.51□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 NEIL2Q969S2 332 aa11.51□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 MARVELD3Q96A59 401 aa11.51□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 TBC1D20Q96BZ9 403 aa11.51□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 PEX11GQ96HA9 241 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms