RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 GRHL3Q8TE85 626 aa13.31□□□□□ -0.28
UPF3A-204ENST00000475218 SSC4DQ8WTU2 575 aa13.31□□□□□ -0.28
UPF3A-204ENST00000475218 ANKRD7Q92527 254 aa13.31□□□□□ -0.28
UPF3A-204ENST00000475218 VPS39Q96JC1 886 aa13.31□□□□□ -0.28
UPF3A-204ENST00000475218 CNDP1Q96KN2 507 aa13.31□□□□□ -0.28
UPF3A-204ENST00000475218 RBCK1Q9BYM8 510 aa13.31□□□□□ -0.28
UPF3A-204ENST00000475218 SLC29A3Q9BZD2 475 aa13.31□□□□□ -0.28
UPF3A-204ENST00000475218 EPS8L2Q9H6S3 715 aa13.31□□□□□ -0.28
UPF3A-204ENST00000475218 CAB39LQ9H9S4 337 aa13.31□□□□□ -0.28
UPF3A-204ENST00000475218 RIC8BQ9NVN3 520 aa13.31□□□□□ -0.28
UPF3A-204ENST00000475218 WHRNQ9P202 907 aa13.31□□□□□ -0.28
UPF3A-204ENST00000475218 FAM187AA6NFU0 413 aa13.3□□□□□ -0.28
UPF3A-204ENST00000475218 PCDH17O14917 1159 aa13.3□□□□□ -0.28
UPF3A-204ENST00000475218 NDUFS4O43181 175 aa13.3□□□□□ -0.28
UPF3A-204ENST00000475218 SEC24DO94855 1032 aaPredicted RBP13.3□□□□□ -0.28
UPF3A-204ENST00000475218 F10P00742 488 aa13.3□□□□□ -0.28
UPF3A-204ENST00000475218 GMPRP36959 345 aa13.3□□□□□ -0.28
UPF3A-204ENST00000475218 TNFSF10P50591 281 aa13.3□□□□□ -0.28
UPF3A-204ENST00000475218 GPX6P59796 221 aa13.3□□□□□ -0.28
UPF3A-204ENST00000475218 REEP5Q00765 189 aa13.3□□□□□ -0.28
UPF3A-204ENST00000475218 TLR1Q15399 786 aa13.3□□□□□ -0.28
UPF3A-204ENST00000475218 IRAK1BP1Q5VVH5 260 aa13.3□□□□□ -0.28
UPF3A-204ENST00000475218 RIPOR1Q6ZS17 1223 aa13.3□□□□□ -0.28
UPF3A-204ENST00000475218 ANKRD37Q7Z713 158 aa13.3□□□□□ -0.28
UPF3A-204ENST00000475218 THOC6Q86W42 341 aaKnown RBP13.3□□□□□ -0.28
UPF3A-204ENST00000475218 NT5CQ8TCD5 201 aa13.3□□□□□ -0.28
UPF3A-204ENST00000475218 SLC5A11Q8WWX8 675 aa13.3□□□□□ -0.28
UPF3A-204ENST00000475218 TAAR6Q96RI8 345 aa13.3□□□□□ -0.28
UPF3A-204ENST00000475218 UNKQ9C0B0 810 aaKnown RBP13.3□□□□□ -0.28
UPF3A-204ENST00000475218 ANKHQ9HCJ1 492 aa13.3□□□□□ -0.28
UPF3A-204ENST00000475218 SLC22A14Q9Y267 594 aa13.3□□□□□ -0.28
UPF3A-204ENST00000475218 OARD1Q9Y530 152 aa13.3□□□□□ -0.28
UPF3A-204ENST00000475218 TCRBV9S1A1TA0A576 114 aa13.3□□□□□ -0.28
UPF3A-204ENST00000475218 ANKUB1A6NFN9 424 aa13.3□□□□□ -0.28
UPF3A-204ENST00000475218 GALR3O60755 368 aaPredicted RBP13.3□□□□□ -0.28
UPF3A-204ENST00000475218 SLC35G6P0C7Q6 338 aa13.3□□□□□ -0.28
UPF3A-204ENST00000475218 SMIM10L1P0DMW3 83 aa13.3□□□□□ -0.28
UPF3A-204ENST00000475218 GDF5P43026 501 aa13.3□□□□□ -0.28
UPF3A-204ENST00000475218 OLR1P78380 273 aa13.3□□□□□ -0.28
UPF3A-204ENST00000475218 CDKL1Q00532 357 aa13.3□□□□□ -0.28
UPF3A-204ENST00000475218 CDC16Q13042 620 aa13.3□□□□□ -0.28
UPF3A-204ENST00000475218 PWP1Q13610 501 aa13.3□□□□□ -0.28
UPF3A-204ENST00000475218 MINDY4Q4G0A6 757 aa13.3□□□□□ -0.28
UPF3A-204ENST00000475218 ZNF324BQ6AW86 544 aaPredicted RBP13.3□□□□□ -0.28
UPF3A-204ENST00000475218 ZDHHC24Q6UX98 284 aa13.3□□□□□ -0.28
UPF3A-204ENST00000475218 CPEB2Q7Z5Q1 589 aaKnown RBP13.3□□□□□ -0.28
UPF3A-204ENST00000475218 KLHDC8AQ8IYD2 350 aa13.3□□□□□ -0.28
UPF3A-204ENST00000475218 SPATA6LQ8N4H0 392 aa13.3□□□□□ -0.28
UPF3A-204ENST00000475218 NKAPQ8N5F7 415 aaKnown RBP13.3□□□□□ -0.28
UPF3A-204ENST00000475218 ATL1Q8WXF7 558 aa13.3□□□□□ -0.28
UPF3A-204ENST00000475218 HAS2Q92819 552 aa13.3□□□□□ -0.28
UPF3A-204ENST00000475218 TSLPQ969D9 159 aa13.3□□□□□ -0.28
UPF3A-204ENST00000475218 PEX11GQ96HA9 241 aa13.3□□□□□ -0.28
UPF3A-204ENST00000475218 SMIM10Q96HG1 83 aa13.3□□□□□ -0.28
UPF3A-204ENST00000475218 NPAS2Q99743 824 aa13.3□□□□□ -0.28
UPF3A-204ENST00000475218 TRIM54Q9BYV2 358 aa13.3□□□□□ -0.28
UPF3A-204ENST00000475218 FAM129AQ9BZQ8 928 aa13.3□□□□□ -0.28
UPF3A-204ENST00000475218 SLC6A16Q9GZN6 736 aa13.3□□□□□ -0.28
UPF3A-204ENST00000475218 SAYSD1Q9NPB0 183 aa13.3□□□□□ -0.28
UPF3A-204ENST00000475218 ZFP69BQ9UJL9 534 aa13.3□□□□□ -0.28
UPF3A-204ENST00000475218 CENPEQ02224 2701 aa13.3□□□□□ -0.28
UPF3A-204ENST00000475218 PRAMEF4O60810 478 aa13.29□□□□□ -0.28
UPF3A-204ENST00000475218 CDC123O75794 336 aaPredicted RBP13.29□□□□□ -0.28
UPF3A-204ENST00000475218 LDLRP01130 860 aa13.29□□□□□ -0.28
UPF3A-204ENST00000475218 CYC1P08574 325 aa13.29□□□□□ -0.28
UPF3A-204ENST00000475218 ZNF888P0CJ79 500 aaPredicted RBP13.29□□□□□ -0.28
UPF3A-204ENST00000475218 GRK3P35626 688 aa13.29□□□□□ -0.28
UPF3A-204ENST00000475218 SLC6A12P48065 614 aa13.29□□□□□ -0.28
UPF3A-204ENST00000475218 DEFB134Q4QY38 66 aa13.29□□□□□ -0.28
UPF3A-204ENST00000475218 PRAMEF9Q5VWM5 478 aa13.29□□□□□ -0.28
UPF3A-204ENST00000475218 PLAG1Q6DJT9 500 aa13.29□□□□□ -0.28
UPF3A-204ENST00000475218 RPUSD3Q6P087 351 aaKnown RBP13.29□□□□□ -0.28
UPF3A-204ENST00000475218 NXPE4Q6UWF7 544 aa13.29□□□□□ -0.28
UPF3A-204ENST00000475218 ST6GALNAC3Q8NDV1 305 aa13.29□□□□□ -0.28
UPF3A-204ENST00000475218 UTP15Q8TED0 518 aaKnown RBP13.29□□□□□ -0.28
UPF3A-204ENST00000475218 CREB3L4Q8TEY5 395 aa13.29□□□□□ -0.28
UPF3A-204ENST00000475218 PYROXD1Q8WU10 500 aa13.29□□□□□ -0.28
UPF3A-204ENST00000475218 FAR1Q8WVX9 515 aa13.29□□□□□ -0.28
UPF3A-204ENST00000475218 RHBDF1Q96CC6 855 aa13.29□□□□□ -0.28
UPF3A-204ENST00000475218 SLX1AQ9BQ83 275 aa13.29□□□□□ -0.28
UPF3A-204ENST00000475218 TUBB6Q9BUF5 446 aa13.29□□□□□ -0.28
UPF3A-204ENST00000475218 KLHL31Q9H511 634 aa13.29□□□□□ -0.28
UPF3A-204ENST00000475218 POPDC3Q9HBV1 291 aa13.29□□□□□ -0.28
UPF3A-204ENST00000475218 LRRC4CQ9HCJ2 640 aa13.29□□□□□ -0.28
UPF3A-204ENST00000475218 FAM159BA6NKW6 160 aa13.28□□□□□ -0.28
UPF3A-204ENST00000475218 TAPBPO15533 448 aa13.28□□□□□ -0.28
UPF3A-204ENST00000475218 MAN1A2O60476 641 aa13.28□□□□□ -0.28
UPF3A-204ENST00000475218 WDPCPO95876 746 aa13.28□□□□□ -0.28
UPF3A-204ENST00000475218 TBX6O95947 436 aaPredicted RBP13.28□□□□□ -0.28
UPF3A-204ENST00000475218 ALOX12P18054 663 aa13.28□□□□□ -0.28
UPF3A-204ENST00000475218 AHRP35869 848 aa13.28□□□□□ -0.28
UPF3A-204ENST00000475218 CSHL1Q14406 222 aa13.28□□□□□ -0.28
UPF3A-204ENST00000475218 H3F3CQ6NXT2 135 aa13.28□□□□□ -0.28
UPF3A-204ENST00000475218 SLCO4C1Q6ZQN7 724 aa13.28□□□□□ -0.28
UPF3A-204ENST00000475218 TMPRSS11BQ86T26 416 aa13.28□□□□□ -0.28
UPF3A-204ENST00000475218 OR1N1Q8NGS0 311 aa13.28□□□□□ -0.28
UPF3A-204ENST00000475218 GPR22Q99680 433 aa13.28□□□□□ -0.28
UPF3A-204ENST00000475218 TMEM79Q9BSE2 394 aa13.28□□□□□ -0.28
UPF3A-204ENST00000475218 DERL2Q9GZP9 239 aa13.28□□□□□ -0.28
UPF3A-204ENST00000475218 PELI2Q9HAT8 420 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms