RNA–Protein interactions for RNA: ENST00000474572.6

USP39-214, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 293 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-214ENST00000474572 SLC35G4P0C7Q5 338 aa9.41□□□□□ -0.9
USP39-214ENST00000474572 THRBP10828 461 aa9.41□□□□□ -0.9
USP39-214ENST00000474572 COL9A1P20849 921 aa9.41□□□□□ -0.9
USP39-214ENST00000474572 CXCR2P25025 360 aa9.41□□□□□ -0.9
USP39-214ENST00000474572 TPP2P29144 1249 aaPredicted RBP9.41□□□□□ -0.9
USP39-214ENST00000474572 PKLRP30613 574 aa9.41□□□□□ -0.9
USP39-214ENST00000474572 CTHP32929 405 aa9.41□□□□□ -0.9
USP39-214ENST00000474572 KDELR2P33947 212 aa9.41□□□□□ -0.9
USP39-214ENST00000474572 PCGF2P35227 344 aa9.41□□□□□ -0.9
USP39-214ENST00000474572 ADPRHP54922 357 aa9.41□□□□□ -0.9
USP39-214ENST00000474572 DLX2Q07687 328 aaPredicted RBP9.41□□□□□ -0.9
USP39-214ENST00000474572 COL19A1Q14993 1142 aa9.41□□□□□ -0.9
USP39-214ENST00000474572 MLF2Q15773 248 aaPredicted RBP9.41□□□□□ -0.9
USP39-214ENST00000474572 MPEG1Q2M385 716 aa9.41□□□□□ -0.9
USP39-214ENST00000474572 NADK2Q4G0N4 442 aa9.41□□□□□ -0.9
USP39-214ENST00000474572 DEPDC1Q5TB30 811 aa9.41□□□□□ -0.9
USP39-214ENST00000474572 ANKRD26P1Q6NSI1 321 aa9.41□□□□□ -0.9
USP39-214ENST00000474572 ZNF621Q6ZSS3 439 aa9.41□□□□□ -0.9
USP39-214ENST00000474572 PIWIL3Q7Z3Z3 882 aaKnown RBP9.41□□□□□ -0.9
USP39-214ENST00000474572 SATL1Q86VE3 508 aa9.41□□□□□ -0.9
USP39-214ENST00000474572 HORMAD1Q86X24 394 aa9.41□□□□□ -0.9
USP39-214ENST00000474572 ADHFE1Q8IWW8 467 aa9.41□□□□□ -0.9
USP39-214ENST00000474572 IL17RCQ8NAC3 791 aa9.41□□□□□ -0.9
USP39-214ENST00000474572 ZNF740Q8NDX6 193 aa9.41□□□□□ -0.9
USP39-214ENST00000474572 GPR156Q8NFN8 814 aa9.41□□□□□ -0.9
USP39-214ENST00000474572 TSPAN14Q8NG11 270 aa9.41□□□□□ -0.9
USP39-214ENST00000474572 OR52N2Q8NGI0 321 aa9.41□□□□□ -0.9
USP39-214ENST00000474572 WDR48Q8TAF3 677 aa9.41□□□□□ -0.9
USP39-214ENST00000474572 MAGEE2Q8TD90 523 aaPredicted RBP9.41□□□□□ -0.9
USP39-214ENST00000474572 NCLNQ969V3 563 aa9.41□□□□□ -0.9
USP39-214ENST00000474572 INSM2Q96T92 566 aaPredicted RBP9.41□□□□□ -0.9
USP39-214ENST00000474572 AIF1LQ9BQI0 150 aa9.41□□□□□ -0.9
USP39-214ENST00000474572 RAB11FIP5Q9BXF6 653 aa9.41□□□□□ -0.9
USP39-214ENST00000474572 C1QTNF7Q9BXJ2 289 aa9.41□□□□□ -0.9
USP39-214ENST00000474572 SLC17A9Q9BYT1 436 aa9.41□□□□□ -0.9
USP39-214ENST00000474572 TRIM4Q9C037 500 aa9.41□□□□□ -0.9
USP39-214ENST00000474572 TWSG1Q9GZX9 223 aa9.41□□□□□ -0.9
USP39-214ENST00000474572 MKRN2Q9H000 416 aaKnown RBP9.41□□□□□ -0.9
USP39-214ENST00000474572 BTBD1Q9H0C5 482 aa9.41□□□□□ -0.9
USP39-214ENST00000474572 OR51B5Q9H339 312 aa9.41□□□□□ -0.9
USP39-214ENST00000474572 CLK4Q9HAZ1 481 aaKnown RBP9.41□□□□□ -0.9
USP39-214ENST00000474572 ATAD3AQ9NVI7 634 aa9.41□□□□□ -0.9
USP39-214ENST00000474572 FBXL12Q9NXK8 326 aa9.41□□□□□ -0.9
USP39-214ENST00000474572 RPS6KA6Q9UK32 745 aa9.41□□□□□ -0.9
USP39-214ENST00000474572 FZD4Q9ULV1 537 aa9.41□□□□□ -0.9
USP39-214ENST00000474572 PLAGL1Q9UM63 463 aa9.41□□□□□ -0.9
USP39-214ENST00000474572 VPS4AQ9UN37 437 aa9.41□□□□□ -0.9
USP39-214ENST00000474572 WDR37Q9Y2I8 494 aa9.41□□□□□ -0.9
USP39-214ENST00000474572 ZBTB32Q9Y2Y4 487 aaPredicted RBP9.41□□□□□ -0.9
USP39-214ENST00000474572 DOCK9Q9BZ29 2069 aa9.41□□□□□ -0.9
USP39-214ENST00000474572 GNG14A0A1W2PPG7 69 aa9.4□□□□□ -0.9
USP39-214ENST00000474572 A0A1W2PQU0 124 aa9.4□□□□□ -0.9
USP39-214ENST00000474572 G3V2T6 193 aa9.4□□□□□ -0.9
USP39-214ENST00000474572 PLPP1O14494 284 aa9.4□□□□□ -0.9
USP39-214ENST00000474572 AHCYL1O43865 530 aa9.4□□□□□ -0.9
USP39-214ENST00000474572 PRICKLE3O43900 615 aaPredicted RBP9.4□□□□□ -0.9
USP39-214ENST00000474572 TNFRSF21O75509 655 aa9.4□□□□□ -0.9
USP39-214ENST00000474572 BMP10O95393 424 aa9.4□□□□□ -0.9
USP39-214ENST00000474572 CPSF4O95639 269 aaKnown RBP9.4□□□□□ -0.9
USP39-214ENST00000474572 SNAP29O95721 258 aa9.4□□□□□ -0.9
USP39-214ENST00000474572 PAK4O96013 591 aaPredicted RBP9.4□□□□□ -0.9
USP39-214ENST00000474572 DNTTP04053 509 aa9.4□□□□□ -0.9
USP39-214ENST00000474572 DCTP40126 519 aa9.4□□□□□ -0.9
USP39-214ENST00000474572 FRKP42685 505 aaPredicted RBP9.4□□□□□ -0.9
USP39-214ENST00000474572 CLCNKAP51800 687 aa9.4□□□□□ -0.9
USP39-214ENST00000474572 KIAA1024LP59773 190 aa9.4□□□□□ -0.9
USP39-214ENST00000474572 MEF2AQ02078 507 aaPredicted RBP9.4□□□□□ -0.9
USP39-214ENST00000474572 RBBP4Q09028 425 aa9.4□□□□□ -0.9
USP39-214ENST00000474572 ELOAQ14241 798 aaKnown RBP9.4□□□□□ -0.9
USP39-214ENST00000474572 RGNQ15493 299 aa9.4□□□□□ -0.9
USP39-214ENST00000474572 LARP7Q4G0J3 582 aaKnown RBP eCLIP9.4□□□□□ -0.9
USP39-214ENST00000474572 IQCCQ4KMZ1 466 aa9.4□□□□□ -0.9
USP39-214ENST00000474572 ZC3H12BQ5HYM0 836 aaKnown RBP9.4□□□□□ -0.9
USP39-214ENST00000474572 THEMIS2Q5TEJ8 643 aa9.4□□□□□ -0.9
USP39-214ENST00000474572 KHDRBS2Q5VWX1 349 aaKnown RBP9.4□□□□□ -0.9
USP39-214ENST00000474572 ZCCHC8Q6NZY4 707 aaKnown RBP9.4□□□□□ -0.9
USP39-214ENST00000474572 ABRAXAS1Q6UWZ7 409 aa9.4□□□□□ -0.9
USP39-214ENST00000474572 USP30Q70CQ3 517 aa9.4□□□□□ -0.9
USP39-214ENST00000474572 CACUL1Q86Y37 369 aa9.4□□□□□ -0.9
USP39-214ENST00000474572 HIPK1Q86Z02 1210 aa9.4□□□□□ -0.9
USP39-214ENST00000474572 ZDHHC13Q8IUH4 622 aa9.4□□□□□ -0.9
USP39-214ENST00000474572 ALDH16A1Q8IZ83 802 aa9.4□□□□□ -0.9
USP39-214ENST00000474572 NATD1Q8N6N6 113 aa9.4□□□□□ -0.9
USP39-214ENST00000474572 ANKRD53Q8N9V6 530 aa9.4□□□□□ -0.9
USP39-214ENST00000474572 LINC01555Q8NAE3 123 aa9.4□□□□□ -0.9
USP39-214ENST00000474572 DENND6BQ8NEG7 585 aa9.4□□□□□ -0.9
USP39-214ENST00000474572 OR2L8Q8NGY9 312 aa9.4□□□□□ -0.9
USP39-214ENST00000474572 CDC26Q8NHZ8 85 aa9.4□□□□□ -0.9
USP39-214ENST00000474572 ERLEC1Q96DZ1 483 aa9.4□□□□□ -0.9
USP39-214ENST00000474572 FBXL20Q96IG2 436 aa9.4□□□□□ -0.9
USP39-214ENST00000474572 MBOAT4Q96T53 435 aa9.4□□□□□ -0.9
USP39-214ENST00000474572 TSC22D3Q99576 134 aa9.4□□□□□ -0.9
USP39-214ENST00000474572 RBM4BQ9BQ04 359 aaKnown RBP9.4□□□□□ -0.9
USP39-214ENST00000474572 APOOQ9BUR5 198 aa9.4□□□□□ -0.9
USP39-214ENST00000474572 SARGQ9BW04 601 aa9.4□□□□□ -0.9
USP39-214ENST00000474572 RBM4Q9BWF3 364 aaKnown RBP9.4□□□□□ -0.9
USP39-214ENST00000474572 EPS8L2Q9H6S3 715 aa9.4□□□□□ -0.9
USP39-214ENST00000474572 CAAP1Q9H8G2 361 aa9.4□□□□□ -0.9
USP39-214ENST00000474572 IL1RAPQ9NPH3 570 aa9.4□□□□□ -0.9
USP39-214ENST00000474572 GPATCH2Q9NW75 528 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms