RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 ZNF37AP17032 561 aaPredicted RBP17.72■□□□□ 0.43
CCDC88B-206ENST00000473405 ITGA8P53708 1063 aa17.72■□□□□ 0.43
CCDC88B-206ENST00000473405 RHAGQ02094 409 aa17.72■□□□□ 0.43
CCDC88B-206ENST00000473405 ZNF33BQ06732 778 aa17.72■□□□□ 0.43
CCDC88B-206ENST00000473405 FASTKD3Q14CZ7 662 aaKnown RBP17.72■□□□□ 0.43
CCDC88B-206ENST00000473405 CATSPEREQ5SY80 951 aa17.72■□□□□ 0.43
CCDC88B-206ENST00000473405 OR5T3Q8NGG3 340 aa17.72■□□□□ 0.43
CCDC88B-206ENST00000473405 NR4A3Q92570 626 aa17.72■□□□□ 0.43
CCDC88B-206ENST00000473405 NEIL2Q969S2 332 aa17.72■□□□□ 0.43
CCDC88B-206ENST00000473405 PDLIM5Q96HC4 596 aaKnown RBP17.72■□□□□ 0.43
CCDC88B-206ENST00000473405 C19orf25Q9UFG5 118 aaPredicted RBP17.72■□□□□ 0.43
CCDC88B-206ENST00000473405 CTAGE15A4D2H0 777 aa17.71■□□□□ 0.43
CCDC88B-206ENST00000473405 OR5H15A6NDH6 313 aa17.71■□□□□ 0.43
CCDC88B-206ENST00000473405 TTI1O43156 1089 aa17.71■□□□□ 0.43
CCDC88B-206ENST00000473405 CDC123O75794 336 aaPredicted RBP17.71■□□□□ 0.43
CCDC88B-206ENST00000473405 GUCA1CO95843 209 aa17.71■□□□□ 0.43
CCDC88B-206ENST00000473405 STSP08842 583 aa17.71■□□□□ 0.43
CCDC88B-206ENST00000473405 DCTP40126 519 aa17.71■□□□□ 0.43
CCDC88B-206ENST00000473405 HERC3Q15034 1050 aa17.71■□□□□ 0.43
CCDC88B-206ENST00000473405 BTBD16Q32M84 506 aa17.71■□□□□ 0.43
CCDC88B-206ENST00000473405 ABHD17BQ5VST6 288 aa17.71■□□□□ 0.43
CCDC88B-206ENST00000473405 STRA8Q7Z7C7 330 aa17.71■□□□□ 0.43
CCDC88B-206ENST00000473405 CTAGE6Q86UF2 777 aa17.71■□□□□ 0.43
CCDC88B-206ENST00000473405 ANKMY2Q8IV38 441 aa17.71■□□□□ 0.43
CCDC88B-206ENST00000473405 ATL1Q8WXF7 558 aa17.71■□□□□ 0.43
CCDC88B-206ENST00000473405 TSNARE1Q96NA8 513 aa17.71■□□□□ 0.43
CCDC88B-206ENST00000473405 OR1F2PQ96R84 312 aa17.71■□□□□ 0.43
CCDC88B-206ENST00000473405 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP17.71■□□□□ 0.43
CCDC88B-206ENST00000473405 CSMD2Q7Z408 3487 aa17.7■□□□□ 0.42
CCDC88B-206ENST00000473405 PABPN1LA6NDY0 278 aaKnown RBP17.7■□□□□ 0.42
CCDC88B-206ENST00000473405 FANCGO15287 622 aa17.7■□□□□ 0.42
CCDC88B-206ENST00000473405 OR1F1O43749 312 aa17.7■□□□□ 0.42
CCDC88B-206ENST00000473405 GALR3O60755 368 aaPredicted RBP17.7■□□□□ 0.42
CCDC88B-206ENST00000473405 DNAJB6O75190 326 aa17.7■□□□□ 0.42
CCDC88B-206ENST00000473405 B3GALT4O96024 378 aa17.7■□□□□ 0.42
CCDC88B-206ENST00000473405 AGTR2P50052 363 aa17.7■□□□□ 0.42
CCDC88B-206ENST00000473405 ARL4CP56559 192 aa17.7■□□□□ 0.42
CCDC88B-206ENST00000473405 KCNK10P57789 538 aa17.7■□□□□ 0.42
CCDC88B-206ENST00000473405 PWP1Q13610 501 aa17.7■□□□□ 0.42
CCDC88B-206ENST00000473405 ZNF460Q14592 562 aa17.7■□□□□ 0.42
CCDC88B-206ENST00000473405 ABRAXAS2Q15018 415 aa17.7■□□□□ 0.42
CCDC88B-206ENST00000473405 FCRLBQ6BAA4 426 aa17.7■□□□□ 0.42
CCDC88B-206ENST00000473405 H3F3CQ6NXT2 135 aa17.7■□□□□ 0.42
CCDC88B-206ENST00000473405 ZC3HC1Q86WB0 502 aaKnown RBP17.7■□□□□ 0.42
CCDC88B-206ENST00000473405 NT5CQ8TCD5 201 aa17.7■□□□□ 0.42
CCDC88B-206ENST00000473405 SLC5A11Q8WWX8 675 aa17.7■□□□□ 0.42
CCDC88B-206ENST00000473405 TSLPQ969D9 159 aa17.7■□□□□ 0.42
CCDC88B-206ENST00000473405 PEX11GQ96HA9 241 aa17.7■□□□□ 0.42
CCDC88B-206ENST00000473405 RUNDC3BQ96NL0 473 aa17.7■□□□□ 0.42
CCDC88B-206ENST00000473405 NPAS2Q99743 824 aa17.7■□□□□ 0.42
CCDC88B-206ENST00000473405 TRIM54Q9BYV2 358 aa17.7■□□□□ 0.42
CCDC88B-206ENST00000473405 ZFATQ9P243 1243 aa17.7■□□□□ 0.42
CCDC88B-206ENST00000473405 TEKT2Q9UIF3 430 aa17.7■□□□□ 0.42
CCDC88B-206ENST00000473405 CREBBPQ92793 2442 aa17.7■□□□□ 0.42
CCDC88B-206ENST00000473405 NPEPPSL1A6NEC2 478 aa17.69■□□□□ 0.42
CCDC88B-206ENST00000473405 E7ESA3 106 aa17.69■□□□□ 0.42
CCDC88B-206ENST00000473405 CDC7O00311 574 aa17.69■□□□□ 0.42
CCDC88B-206ENST00000473405 PRAMEF2O60811 474 aa17.69■□□□□ 0.42
CCDC88B-206ENST00000473405 ALOX12P18054 663 aa17.69■□□□□ 0.42
CCDC88B-206ENST00000473405 SCTRP47872 440 aa17.69■□□□□ 0.42
CCDC88B-206ENST00000473405 GNG11P61952 73 aa17.69■□□□□ 0.42
CCDC88B-206ENST00000473405 REEP5Q00765 189 aa17.69■□□□□ 0.42
CCDC88B-206ENST00000473405 MGAT5Q09328 741 aa17.69■□□□□ 0.42
CCDC88B-206ENST00000473405 DEFB134Q4QY38 66 aa17.69■□□□□ 0.42
CCDC88B-206ENST00000473405 SFT2D3Q587I9 215 aa17.69■□□□□ 0.42
CCDC88B-206ENST00000473405 ACER2Q5QJU3 275 aa17.69■□□□□ 0.42
CCDC88B-206ENST00000473405 BEST3Q8N1M1 668 aa17.69■□□□□ 0.42
CCDC88B-206ENST00000473405 ANKRD53Q8N9V6 530 aa17.69■□□□□ 0.42
CCDC88B-206ENST00000473405 MCMBPQ9BTE3 642 aa17.69■□□□□ 0.42
CCDC88B-206ENST00000473405 TRIM31Q9BZY9 425 aa17.69■□□□□ 0.42
CCDC88B-206ENST00000473405 STMN3Q9NZ72 180 aa17.69■□□□□ 0.42
CCDC88B-206ENST00000473405 MOCS1Q9NZB8 636 aa17.69■□□□□ 0.42
CCDC88B-206ENST00000473405 SAR1BQ9Y6B6 198 aa17.69■□□□□ 0.42
CCDC88B-206ENST00000473405 MYO7BQ6PIF6 2116 aa17.68■□□□□ 0.42
CCDC88B-206ENST00000473405 FAM95CA0A1B0GW59 222 aa17.68■□□□□ 0.42
CCDC88B-206ENST00000473405 A8MUI8 341 aa17.68■□□□□ 0.42
CCDC88B-206ENST00000473405 MAGEB17A8MXT2 336 aa17.68■□□□□ 0.42
CCDC88B-206ENST00000473405 MAN1A2O60476 641 aa17.68■□□□□ 0.42
CCDC88B-206ENST00000473405 ZG16O60844 167 aa17.68■□□□□ 0.42
CCDC88B-206ENST00000473405 FHP07954 510 aa17.68■□□□□ 0.42
CCDC88B-206ENST00000473405 ZNF888P0CJ79 500 aaPredicted RBP17.68■□□□□ 0.42
CCDC88B-206ENST00000473405 SAT1P21673 171 aa17.68■□□□□ 0.42
CCDC88B-206ENST00000473405 IL10P22301 178 aa17.68■□□□□ 0.42
CCDC88B-206ENST00000473405 MST1P26927 711 aa17.68■□□□□ 0.42
CCDC88B-206ENST00000473405 RPL21P46778 160 aaKnown RBP17.68■□□□□ 0.42
CCDC88B-206ENST00000473405 TAS2R39P59534 338 aa17.68■□□□□ 0.42
CCDC88B-206ENST00000473405 OLR1P78380 273 aa17.68■□□□□ 0.42
CCDC88B-206ENST00000473405 SRSF11Q05519 484 aaKnown RBP17.68■□□□□ 0.42
CCDC88B-206ENST00000473405 HYAL2Q12891 473 aa17.68■□□□□ 0.42
CCDC88B-206ENST00000473405 PDIA2Q13087 525 aaKnown RBP17.68■□□□□ 0.42
CCDC88B-206ENST00000473405 CSHL1Q14406 222 aa17.68■□□□□ 0.42
CCDC88B-206ENST00000473405 NSDHLQ15738 373 aa17.68■□□□□ 0.42
CCDC88B-206ENST00000473405 EXT1Q16394 746 aa17.68■□□□□ 0.42
CCDC88B-206ENST00000473405 C1QL3Q5VWW1 255 aa17.68■□□□□ 0.42
CCDC88B-206ENST00000473405 PAPD4Q6PIY7 484 aaKnown RBP17.68■□□□□ 0.42
CCDC88B-206ENST00000473405 THOC6Q86W42 341 aaKnown RBP17.68■□□□□ 0.42
CCDC88B-206ENST00000473405 FBXO36Q8NEA4 188 aa17.68■□□□□ 0.42
CCDC88B-206ENST00000473405 PLPP5Q8NEB5 264 aa17.68■□□□□ 0.42
CCDC88B-206ENST00000473405 M1APQ8TC57 530 aa17.68■□□□□ 0.42
CCDC88B-206ENST00000473405 ANKRD49Q8WVL7 239 aa17.68■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms