RNA–Protein interactions for RNA: ENST00000464541.5

PTCD3-205, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5

Gene PTCD3, Length 890 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-205ENST00000464541 RBM41Q96IZ5 413 aaKnown RBP4.92□□□□□ -1.62
PTCD3-205ENST00000464541 GAL3ST4Q96RP7 486 aa4.92□□□□□ -1.62
PTCD3-205ENST00000464541 IL12RB2Q99665 862 aa4.92□□□□□ -1.62
PTCD3-205ENST00000464541 PHPT1Q9NRX4 125 aaPredicted RBP4.92□□□□□ -1.62
PTCD3-205ENST00000464541 RNF123Q5XPI4 1314 aa4.92□□□□□ -1.62
PTCD3-205ENST00000464541 ARID2Q68CP9 1835 aa4.91□□□□□ -1.62
PTCD3-205ENST00000464541 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP4.91□□□□□ -1.62
PTCD3-205ENST00000464541 A8MVM7 634 aa4.91□□□□□ -1.62
PTCD3-205ENST00000464541 RNF103O00237 685 aa4.91□□□□□ -1.62
PTCD3-205ENST00000464541 TRAFD1O14545 582 aaPredicted RBP4.91□□□□□ -1.62
PTCD3-205ENST00000464541 PPIP5K2O43314 1243 aa4.91□□□□□ -1.62
PTCD3-205ENST00000464541 FAM58BPP0C7Q3 252 aa4.91□□□□□ -1.62
PTCD3-205ENST00000464541 THEGLP0DJG4 465 aa4.91□□□□□ -1.62
PTCD3-205ENST00000464541 EDNRAP25101 427 aa4.91□□□□□ -1.62
PTCD3-205ENST00000464541 HOXC13P31276 330 aa4.91□□□□□ -1.62
PTCD3-205ENST00000464541 MS4A2Q01362 244 aa4.91□□□□□ -1.62
PTCD3-205ENST00000464541 DHODHQ02127 395 aa4.91□□□□□ -1.62
PTCD3-205ENST00000464541 ZNF177Q13360 481 aaPredicted RBP4.91□□□□□ -1.62
PTCD3-205ENST00000464541 BTNL8Q6UX41 500 aa4.91□□□□□ -1.62
PTCD3-205ENST00000464541 GDPGP1Q6ZNW5 385 aa4.91□□□□□ -1.62
PTCD3-205ENST00000464541 SLC22A15Q8IZD6 547 aa4.91□□□□□ -1.62
PTCD3-205ENST00000464541 APCDD1Q8J025 514 aa4.91□□□□□ -1.62
PTCD3-205ENST00000464541 AQP11Q8NBQ7 271 aa4.91□□□□□ -1.62
PTCD3-205ENST00000464541 PARLQ9H300 379 aa4.91□□□□□ -1.62
PTCD3-205ENST00000464541 CHCHD3Q9NX63 227 aaKnown RBP4.91□□□□□ -1.62
PTCD3-205ENST00000464541 RUVBL2Q9Y230 463 aaKnown RBP4.91□□□□□ -1.62
PTCD3-205ENST00000464541 KLK4Q9Y5K2 254 aa4.91□□□□□ -1.62
PTCD3-205ENST00000464541 IGHV4-30-2A0A087WSY4 118 aa4.9□□□□□ -1.63
PTCD3-205ENST00000464541 hCG_38984A0A1B0GV85 526 aa4.9□□□□□ -1.63
PTCD3-205ENST00000464541 ZFYP08048 801 aaPredicted RBP4.9□□□□□ -1.63
PTCD3-205ENST00000464541 SHC1P29353 583 aa4.9□□□□□ -1.63
PTCD3-205ENST00000464541 PTENP60484 403 aa4.9□□□□□ -1.63
PTCD3-205ENST00000464541 ERVK-16P61578 105 aa4.9□□□□□ -1.63
PTCD3-205ENST00000464541 FAM133BQ5BKY9 247 aaKnown RBP4.9□□□□□ -1.63
PTCD3-205ENST00000464541 PET117Q6UWS5 81 aa4.9□□□□□ -1.63
PTCD3-205ENST00000464541 TMEM182Q6ZP80 229 aaPredicted RBP4.9□□□□□ -1.63
PTCD3-205ENST00000464541 CCDC185Q8N715 623 aa4.9□□□□□ -1.63
PTCD3-205ENST00000464541 NXPE2Q96DL1 559 aa4.9□□□□□ -1.63
PTCD3-205ENST00000464541 CNRIP1Q96F85 164 aaPredicted RBP4.9□□□□□ -1.63
PTCD3-205ENST00000464541 ATXN7L3BQ96GX2 97 aa4.9□□□□□ -1.63
PTCD3-205ENST00000464541 NACAP1Q9BZK3 213 aa4.9□□□□□ -1.63
PTCD3-205ENST00000464541 TRIM6Q9C030 488 aaPredicted RBP4.9□□□□□ -1.63
PTCD3-205ENST00000464541 RPF1Q9H9Y2 349 aaKnown RBP4.9□□□□□ -1.63
PTCD3-205ENST00000464541 GPN1Q9HCN4 374 aaPredicted RBP4.9□□□□□ -1.63
PTCD3-205ENST00000464541 POLKQ9UBT6 870 aa4.9□□□□□ -1.63
PTCD3-205ENST00000464541 COLEC10Q9Y6Z7 277 aa4.9□□□□□ -1.63
PTCD3-205ENST00000464541 ERI2A8K979 691 aaKnown RBP4.89□□□□□ -1.63
PTCD3-205ENST00000464541 FAM86B1E9PN63 330 aa4.89□□□□□ -1.63
PTCD3-205ENST00000464541 TLX2O43763 284 aaPredicted RBP4.89□□□□□ -1.63
PTCD3-205ENST00000464541 MTRF1O75570 445 aaKnown RBP4.89□□□□□ -1.63
PTCD3-205ENST00000464541 NXPH4O95158 308 aa4.89□□□□□ -1.63
PTCD3-205ENST00000464541 FAM86B2P0C5J1 330 aa4.89□□□□□ -1.63
PTCD3-205ENST00000464541 TLX1P31314 330 aaPredicted RBP4.89□□□□□ -1.63
PTCD3-205ENST00000464541 LMO4P61968 165 aa4.89□□□□□ -1.63
PTCD3-205ENST00000464541 SCN1BQ07699 218 aa4.89□□□□□ -1.63
PTCD3-205ENST00000464541 GRB14Q14449 540 aa4.89□□□□□ -1.63
PTCD3-205ENST00000464541 PPA1Q15181 289 aa4.89□□□□□ -1.63
PTCD3-205ENST00000464541 MS4A18Q3C1V0 323 aa4.89□□□□□ -1.63
PTCD3-205ENST00000464541 FAM182AQ5T1J6 154 aa4.89□□□□□ -1.63
PTCD3-205ENST00000464541 COX8CQ7Z4L0 72 aa4.89□□□□□ -1.63
PTCD3-205ENST00000464541 VSIG1Q86XK7 387 aa4.89□□□□□ -1.63
PTCD3-205ENST00000464541 C11orf45Q8TAV5 145 aa4.89□□□□□ -1.63
PTCD3-205ENST00000464541 MIPOL1Q8TD10 442 aa4.89□□□□□ -1.63
PTCD3-205ENST00000464541 RIT1Q92963 219 aa4.89□□□□□ -1.63
PTCD3-205ENST00000464541 ST6GALNAC6Q969X2 333 aa4.89□□□□□ -1.63
PTCD3-205ENST00000464541 TSSK2Q96PF2 358 aa4.89□□□□□ -1.63
PTCD3-205ENST00000464541 A0A0B4J203 849 aa4.88□□□□□ -1.63
PTCD3-205ENST00000464541 A0A1W2PPR1 153 aa4.88□□□□□ -1.63
PTCD3-205ENST00000464541 PRSS46E5RG02 174 aa4.88□□□□□ -1.63
PTCD3-205ENST00000464541 IFIT3O14879 490 aaKnown RBP4.88□□□□□ -1.63
PTCD3-205ENST00000464541 PI15O43692 258 aa4.88□□□□□ -1.63
PTCD3-205ENST00000464541 HSPA4LO95757 839 aa4.88□□□□□ -1.63
PTCD3-205ENST00000464541 GATA1P15976 413 aaPredicted RBP4.88□□□□□ -1.63
PTCD3-205ENST00000464541 CASTP20810 708 aaKnown RBP4.88□□□□□ -1.63
PTCD3-205ENST00000464541 C4BPBP20851 252 aa4.88□□□□□ -1.63
PTCD3-205ENST00000464541 PSMB4P28070 264 aa4.88□□□□□ -1.63
PTCD3-205ENST00000464541 SSTR1P30872 391 aa4.88□□□□□ -1.63
PTCD3-205ENST00000464541 GPR183P32249 361 aa4.88□□□□□ -1.63
PTCD3-205ENST00000464541 KRTAP10-5P60370 271 aa4.88□□□□□ -1.63
PTCD3-205ENST00000464541 POU5F1Q01860 360 aaKnown RBP4.88□□□□□ -1.63
PTCD3-205ENST00000464541 PAX8Q06710 450 aa4.88□□□□□ -1.63
PTCD3-205ENST00000464541 FAM189A2Q15884 450 aa4.88□□□□□ -1.63
PTCD3-205ENST00000464541 ZNF343Q6P1L6 599 aa4.88□□□□□ -1.63
PTCD3-205ENST00000464541 DHRS11Q6UWP2 260 aa4.88□□□□□ -1.63
PTCD3-205ENST00000464541 PIGWQ7Z7B1 504 aa4.88□□□□□ -1.63
PTCD3-205ENST00000464541 NPRL2Q8WTW4 380 aa4.88□□□□□ -1.63
PTCD3-205ENST00000464541 DEPDC1BQ8WUY9 529 aa4.88□□□□□ -1.63
PTCD3-205ENST00000464541 NAP1L5Q96NT1 182 aaPredicted RBP4.88□□□□□ -1.63
PTCD3-205ENST00000464541 ALKBH7Q9BT30 221 aaPredicted RBP4.88□□□□□ -1.63
PTCD3-205ENST00000464541 NLGN3Q9NZ94 848 aa4.88□□□□□ -1.63
PTCD3-205ENST00000464541 PCNX3Q9H6A9 2034 aa4.88□□□□□ -1.63
PTCD3-205ENST00000464541 TRAV34A0A0B4J273 112 aa4.87□□□□□ -1.63
PTCD3-205ENST00000464541 G3V2L1 256 aa4.87□□□□□ -1.63
PTCD3-205ENST00000464541 SLC30A4O14863 429 aa4.87□□□□□ -1.63
PTCD3-205ENST00000464541 KIF5CO60282 957 aa4.87□□□□□ -1.63
PTCD3-205ENST00000464541 COPB2P35606 906 aa4.87□□□□□ -1.63
PTCD3-205ENST00000464541 ALDH1L2Q3SY69 923 aa4.87□□□□□ -1.63
PTCD3-205ENST00000464541 FAM46CQ5VWP2 391 aa4.87□□□□□ -1.63
PTCD3-205ENST00000464541 C15orf52Q6ZUT6 534 aaKnown RBP4.87□□□□□ -1.63
PTCD3-205ENST00000464541 GPRIN3Q6ZVF9 776 aa4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms