RNA–Protein interactions for RNA: ENST00000449223.3

RPS28-202, Transcript of ribosomal protein S28, humanhuman

TSL 2

Gene RPS28, Length 1,523 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-202ENST00000449223 EBAG9O00559 213 aa18.4■□□□□ 0.54
RPS28-202ENST00000449223 NTN3O00634 580 aaPredicted RBP18.4■□□□□ 0.54
RPS28-202ENST00000449223 KIF1CO43896 1103 aaKnown RBP18.4■□□□□ 0.54
RPS28-202ENST00000449223 SEC22BO75396 215 aa18.4■□□□□ 0.54
RPS28-202ENST00000449223 NCF2P19878 526 aaPredicted RBP18.4■□□□□ 0.54
RPS28-202ENST00000449223 GABRA4P48169 554 aa18.4■□□□□ 0.54
RPS28-202ENST00000449223 RPL38P63173 70 aaKnown RBP18.4■□□□□ 0.54
RPS28-202ENST00000449223 SQLEQ14534 574 aa18.4■□□□□ 0.54
RPS28-202ENST00000449223 ZC3H12BQ5HYM0 836 aaKnown RBP18.4■□□□□ 0.54
RPS28-202ENST00000449223 ASPGQ86U10 573 aa18.4■□□□□ 0.54
RPS28-202ENST00000449223 NAXDQ8IW45 347 aa18.4■□□□□ 0.54
RPS28-202ENST00000449223 METTL4Q8N3J2 472 aa18.4■□□□□ 0.54
RPS28-202ENST00000449223 DNAJC22Q8N4W6 341 aa18.4■□□□□ 0.54
RPS28-202ENST00000449223 OR4D9Q8NGE8 314 aa18.4■□□□□ 0.54
RPS28-202ENST00000449223 KLHL6Q8WZ60 621 aa18.4■□□□□ 0.54
RPS28-202ENST00000449223 ERP27Q96DN0 273 aa18.4■□□□□ 0.54
RPS28-202ENST00000449223 APIPQ96GX9 242 aa18.4■□□□□ 0.54
RPS28-202ENST00000449223 SLC41A2Q96JW4 573 aa18.4■□□□□ 0.54
RPS28-202ENST00000449223 ZNF285Q96NJ3 590 aa18.4■□□□□ 0.54
RPS28-202ENST00000449223 NUDT22Q9BRQ3 303 aa18.4■□□□□ 0.54
RPS28-202ENST00000449223 MRPL1Q9BYD6 325 aaKnown RBP18.4■□□□□ 0.54
RPS28-202ENST00000449223 OR51B5Q9H339 312 aa18.4■□□□□ 0.54
RPS28-202ENST00000449223 FAM60AQ9NP50 221 aa18.4■□□□□ 0.54
RPS28-202ENST00000449223 FTSJ1Q9UET6 329 aa18.4■□□□□ 0.54
RPS28-202ENST00000449223 ZNF292O60281 2723 aa18.4■□□□□ 0.54
RPS28-202ENST00000449223 EP300Q09472 2414 aaPredicted RBP18.4■□□□□ 0.54
RPS28-202ENST00000449223 CAPN14A8MX76 684 aa18.39■□□□□ 0.54
RPS28-202ENST00000449223 PRAMEF10O60809 474 aa18.39■□□□□ 0.54
RPS28-202ENST00000449223 RPLP0P05388 317 aaKnown RBP18.39■□□□□ 0.54
RPS28-202ENST00000449223 MAPK1P28482 360 aa18.39■□□□□ 0.54
RPS28-202ENST00000449223 DIO3P55073 304 aa18.39■□□□□ 0.54
RPS28-202ENST00000449223 CCL7P80098 99 aa18.39■□□□□ 0.54
RPS28-202ENST00000449223 CYP4F3Q08477 520 aa18.39■□□□□ 0.54
RPS28-202ENST00000449223 ACSM2AQ08AH3 577 aa18.39■□□□□ 0.54
RPS28-202ENST00000449223 ACSM2BQ68CK6 577 aa18.39■□□□□ 0.54
RPS28-202ENST00000449223 WDR48Q8TAF3 677 aa18.39■□□□□ 0.54
RPS28-202ENST00000449223 SLC13A3Q8WWT9 602 aa18.39■□□□□ 0.54
RPS28-202ENST00000449223 CATSPER2Q96P56 530 aa18.39■□□□□ 0.54
RPS28-202ENST00000449223 FCRL4Q96PJ5 515 aa18.39■□□□□ 0.54
RPS28-202ENST00000449223 CENPKQ9BS16 269 aa18.39■□□□□ 0.54
RPS28-202ENST00000449223 ZNF717Q9BY31 904 aaPredicted RBP18.39■□□□□ 0.54
RPS28-202ENST00000449223 AICDAQ9GZX7 198 aa18.39■□□□□ 0.54
RPS28-202ENST00000449223 KLHL25Q9H0H3 589 aa18.39■□□□□ 0.54
RPS28-202ENST00000449223 ZNF768Q9H5H4 540 aaKnown RBP18.39■□□□□ 0.54
RPS28-202ENST00000449223 RUVBL1Q9Y265 456 aaKnown RBP18.39■□□□□ 0.54
RPS28-202ENST00000449223 COL27A1Q8IZC6 1860 aaPredicted RBP18.39■□□□□ 0.53
RPS28-202ENST00000449223 A0A0J9YVX5 310 aa18.39■□□□□ 0.53
RPS28-202ENST00000449223 NDUFS4O43181 175 aa18.39■□□□□ 0.53
RPS28-202ENST00000449223 SRPX2O60687 465 aaPredicted RBP18.39■□□□□ 0.53
RPS28-202ENST00000449223 SLC35G6P0C7Q6 338 aa18.39■□□□□ 0.53
RPS28-202ENST00000449223 PRPS2P11908 318 aa18.39■□□□□ 0.53
RPS28-202ENST00000449223 HNRNPH1P31943 449 aaKnown RBP18.39■□□□□ 0.53
RPS28-202ENST00000449223 TSFMP43897 325 aaKnown RBP18.39■□□□□ 0.53
RPS28-202ENST00000449223 ACADVLP49748 655 aa18.39■□□□□ 0.53
RPS28-202ENST00000449223 CYP4F2P78329 520 aa18.39■□□□□ 0.53
RPS28-202ENST00000449223 HSD11B2P80365 405 aa18.39■□□□□ 0.53
RPS28-202ENST00000449223 AASDHQ4L235 1098 aaPredicted RBP18.39■□□□□ 0.53
RPS28-202ENST00000449223 CACHD1Q5VU97 1274 aa18.39■□□□□ 0.53
RPS28-202ENST00000449223 FRMPD2BQ6IN97 320 aa18.39■□□□□ 0.53
RPS28-202ENST00000449223 NOXRED1Q6NXP6 359 aa18.39■□□□□ 0.53
RPS28-202ENST00000449223 ZNF574Q6ZN55 896 aaPredicted RBP18.39■□□□□ 0.53
RPS28-202ENST00000449223 USP53Q70EK8 1073 aa18.39■□□□□ 0.53
RPS28-202ENST00000449223 FAM9CQ8IZT9 166 aa18.39■□□□□ 0.53
RPS28-202ENST00000449223 ZNF655Q8N720 491 aaPredicted RBP18.39■□□□□ 0.53
RPS28-202ENST00000449223 CAMKVQ8NCB2 501 aa18.39■□□□□ 0.53
RPS28-202ENST00000449223 REXO4Q9GZR2 422 aaKnown RBP18.39■□□□□ 0.53
RPS28-202ENST00000449223 PDE7BQ9NP56 450 aa18.39■□□□□ 0.53
RPS28-202ENST00000449223 AHSPQ9NZD4 102 aa18.39■□□□□ 0.53
RPS28-202ENST00000449223 TMEM9Q9P0T7 183 aa18.39■□□□□ 0.53
RPS28-202ENST00000449223 ADAM29Q9UKF5 820 aa18.39■□□□□ 0.53
RPS28-202ENST00000449223 EIF3LQ9Y262 564 aaKnown RBP18.39■□□□□ 0.53
RPS28-202ENST00000449223 H0YGG7 62 aa18.38■□□□□ 0.53
RPS28-202ENST00000449223 PLPP1O14494 284 aa18.38■□□□□ 0.53
RPS28-202ENST00000449223 ANKRD28O15084 1053 aa18.38■□□□□ 0.53
RPS28-202ENST00000449223 ZSCAN9O15535 394 aaPredicted RBP18.38■□□□□ 0.53
RPS28-202ENST00000449223 SH3BP5O60239 455 aa18.38■□□□□ 0.53
RPS28-202ENST00000449223 RASSF9O75901 435 aa18.38■□□□□ 0.53
RPS28-202ENST00000449223 THRAP10827 490 aa18.38■□□□□ 0.53
RPS28-202ENST00000449223 ARF3P61204 181 aaPredicted RBP18.38■□□□□ 0.53
RPS28-202ENST00000449223 STXBP1P61764 594 aaKnown RBP18.38■□□□□ 0.53
RPS28-202ENST00000449223 RAE1P78406 368 aaKnown RBP18.38■□□□□ 0.53
RPS28-202ENST00000449223 RGS1Q08116 209 aa18.38■□□□□ 0.53
RPS28-202ENST00000449223 UBAP2LQ14157 1087 aaKnown RBP18.38■□□□□ 0.53
RPS28-202ENST00000449223 KRT72Q14CN4 511 aa18.38■□□□□ 0.53
RPS28-202ENST00000449223 PDCD4Q53EL6 469 aaKnown RBP18.38■□□□□ 0.53
RPS28-202ENST00000449223 IL23RQ5VWK5 629 aa18.38■□□□□ 0.53
RPS28-202ENST00000449223 TMPRSS9Q7Z410 1059 aa18.38■□□□□ 0.53
RPS28-202ENST00000449223 COMMD6Q7Z4G1 85 aa18.38■□□□□ 0.53
RPS28-202ENST00000449223 ARHGAP22Q7Z5H3 698 aa18.38■□□□□ 0.53
RPS28-202ENST00000449223 D2HGDHQ8N465 521 aa18.38■□□□□ 0.53
RPS28-202ENST00000449223 C1orf52Q8N6N3 182 aaKnown RBP18.38■□□□□ 0.53
RPS28-202ENST00000449223 SRFBP1Q8NEF9 429 aaKnown RBP18.38■□□□□ 0.53
RPS28-202ENST00000449223 RERGQ96A58 199 aaPredicted RBP18.38■□□□□ 0.53
RPS28-202ENST00000449223 MS4A6EQ96DS6 147 aa18.38■□□□□ 0.53
RPS28-202ENST00000449223 CDC6Q99741 560 aa18.38■□□□□ 0.53
RPS28-202ENST00000449223 C1orf50Q9BV19 199 aa18.38■□□□□ 0.53
RPS28-202ENST00000449223 ZIM2Q9NZV7 527 aa18.38■□□□□ 0.53
RPS28-202ENST00000449223 ARMCX1Q9P291 453 aa18.38■□□□□ 0.53
RPS28-202ENST00000449223 LOC105369274A0A096LPK9 316 aa18.37■□□□□ 0.53
RPS28-202ENST00000449223 LOC102723532A0A0G2JNH3 316 aa18.37■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms