RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 TMEM164Q5U3C3 297 aa15.05■□□□□ -0
USP40-206ENST00000443711 ADNP2Q6IQ32 1131 aa15.05■□□□□ -0
USP40-206ENST00000443711 CHSY3Q70JA7 882 aa15.05■□□□□ -0
USP40-206ENST00000443711 USP7Q93009 1102 aa15.05■□□□□ -0
USP40-206ENST00000443711 FAR2Q96K12 515 aa15.05■□□□□ -0
USP40-206ENST00000443711 ZPBPQ9BS86 351 aa15.05■□□□□ -0
USP40-206ENST00000443711 POLR1BQ9H9Y6 1135 aa15.05■□□□□ -0
USP40-206ENST00000443711 BRF2Q9HAW0 419 aa15.05■□□□□ -0
USP40-206ENST00000443711 APMAPQ9HDC9 416 aa15.05■□□□□ -0
USP40-206ENST00000443711 DMRT3Q9NQL9 472 aa15.05■□□□□ -0
USP40-206ENST00000443711 PFDN4Q9NQP4 134 aa15.05■□□□□ -0
USP40-206ENST00000443711 FARSBQ9NSD9 589 aaKnown RBP15.05■□□□□ -0
USP40-206ENST00000443711 STARD5Q9NSY2 213 aa15.05■□□□□ -0
USP40-206ENST00000443711 PNPOQ9NVS9 261 aa15.05■□□□□ -0
USP40-206ENST00000443711 PPT2Q9UMR5 302 aa15.05■□□□□ -0
USP40-206ENST00000443711 SATB2Q9UPW6 733 aa15.05■□□□□ -0
USP40-206ENST00000443711 CFAP54Q96N23 3096 aa15.04■□□□□ -0
USP40-206ENST00000443711 A0A1W2PNU3 283 aaPredicted RBP15.04■□□□□ -0
USP40-206ENST00000443711 SERTM1A2A2V5 107 aa15.04■□□□□ -0
USP40-206ENST00000443711 MAGEB17A8MXT2 336 aa15.04■□□□□ -0
USP40-206ENST00000443711 TMEM233B4DJY2 109 aa15.04■□□□□ -0
USP40-206ENST00000443711 SLCO1B7G3V0H7 640 aa15.04■□□□□ -0
USP40-206ENST00000443711 P2RX6O15547 441 aa15.04■□□□□ -0
USP40-206ENST00000443711 TGFB1P01137 390 aa15.04■□□□□ -0
USP40-206ENST00000443711 HSD3B1P14060 373 aa15.04■□□□□ -0
USP40-206ENST00000443711 HSD3B2P26439 372 aa15.04■□□□□ -0
USP40-206ENST00000443711 HTR6P50406 440 aa15.04■□□□□ -0
USP40-206ENST00000443711 HK2P52789 917 aa15.04■□□□□ -0
USP40-206ENST00000443711 ARSFP54793 590 aa15.04■□□□□ -0
USP40-206ENST00000443711 STXBP1P61764 594 aaKnown RBP15.04■□□□□ -0
USP40-206ENST00000443711 RPS13P62277 151 aaKnown RBP15.04■□□□□ -0
USP40-206ENST00000443711 CSTF3Q12996 717 aaKnown RBP15.04■□□□□ -0
USP40-206ENST00000443711 NDUFA9Q16795 377 aa15.04■□□□□ -0
USP40-206ENST00000443711 HKDC1Q2TB90 917 aa15.04■□□□□ -0
USP40-206ENST00000443711 UGT3A2Q3SY77 523 aa15.04■□□□□ -0
USP40-206ENST00000443711 TMEM35AQ53FP2 167 aa15.04■□□□□ -0
USP40-206ENST00000443711 TOR1AIP1Q5JTV8 583 aa15.04■□□□□ -0
USP40-206ENST00000443711 YOD1Q5VVQ6 348 aaPredicted RBP15.04■□□□□ -0
USP40-206ENST00000443711 GARNL3Q5VVW2 1013 aa15.04■□□□□ -0
USP40-206ENST00000443711 DGLUCYQ7Z3D6 616 aa15.04■□□□□ -0
USP40-206ENST00000443711 MARCH9Q86YJ5 346 aa15.04■□□□□ -0
USP40-206ENST00000443711 TMEM126BQ8IUX1 230 aa15.04■□□□□ -0
USP40-206ENST00000443711 GBP7Q8N8V2 638 aaPredicted RBP15.04■□□□□ -0
USP40-206ENST00000443711 TEFMQ96QE5 360 aaKnown RBP15.04■□□□□ -0
USP40-206ENST00000443711 SERPINI1Q99574 410 aa15.04■□□□□ -0
USP40-206ENST00000443711 CTRCQ99895 268 aa15.04■□□□□ -0
USP40-206ENST00000443711 MACROD1Q9BQ69 325 aa15.04■□□□□ -0
USP40-206ENST00000443711 NDC1Q9BTX1 674 aa15.04■□□□□ -0
USP40-206ENST00000443711 DDA1Q9BW61 102 aa15.04■□□□□ -0
USP40-206ENST00000443711 MS4A8Q9BY19 250 aa15.04■□□□□ -0
USP40-206ENST00000443711 ASPSCR1Q9BZE9 553 aa15.04■□□□□ -0
USP40-206ENST00000443711 B3GNT4Q9C0J1 378 aa15.04■□□□□ -0
USP40-206ENST00000443711 SLC6A16Q9GZN6 736 aa15.04■□□□□ -0
USP40-206ENST00000443711 SLCO1B3Q9NPD5 702 aa15.04■□□□□ -0
USP40-206ENST00000443711 NMRK1Q9NWW6 199 aa15.04■□□□□ -0
USP40-206ENST00000443711 RUVBL1Q9Y265 456 aaKnown RBP15.04■□□□□ -0
USP40-206ENST00000443711 PCDHGA8Q9Y5G5 932 aa15.04■□□□□ -0
USP40-206ENST00000443711 DNAJC15Q9Y5T4 150 aa15.04■□□□□ -0
USP40-206ENST00000443711 HYKKA2RU49 373 aa15.03■□□□□ -0
USP40-206ENST00000443711 LRIT2A6NDA9 550 aa15.03■□□□□ -0
USP40-206ENST00000443711 SLC28A1O00337 649 aa15.03■□□□□ -0
USP40-206ENST00000443711 ZNF749O43361 778 aa15.03■□□□□ -0
USP40-206ENST00000443711 HBQ1P09105 142 aa15.03■□□□□ -0
USP40-206ENST00000443711 GYS2P54840 703 aa15.03■□□□□ -0
USP40-206ENST00000443711 TGM3Q08188 693 aa15.03■□□□□ -0
USP40-206ENST00000443711 HYAL2Q12891 473 aa15.03■□□□□ -0
USP40-206ENST00000443711 CUL3Q13618 768 aa15.03■□□□□ -0
USP40-206ENST00000443711 ABRAXAS2Q15018 415 aa15.03■□□□□ -0
USP40-206ENST00000443711 MUM1Q2TAK8 710 aa15.03■□□□□ -0
USP40-206ENST00000443711 ADPRMQ3LIE5 342 aa15.03■□□□□ -0
USP40-206ENST00000443711 DEPDC1Q5TB30 811 aa15.03■□□□□ -0
USP40-206ENST00000443711 KHDRBS2Q5VWX1 349 aaKnown RBP15.03■□□□□ -0
USP40-206ENST00000443711 FAM219BQ5XKK7 198 aa15.03■□□□□ -0
USP40-206ENST00000443711 PWWP2BQ6NUJ5 590 aa15.03■□□□□ -0
USP40-206ENST00000443711 SCIMPQ6UWF3 145 aa15.03■□□□□ -0
USP40-206ENST00000443711 RNF165Q6ZSG1 346 aa15.03■□□□□ -0
USP40-206ENST00000443711 FAM47EQ6ZV65 393 aa15.03■□□□□ -0
USP40-206ENST00000443711 RNF175Q8N4F7 328 aa15.03■□□□□ -0
USP40-206ENST00000443711 KCT2Q8NC54 265 aa15.03■□□□□ -0
USP40-206ENST00000443711 SRFBP1Q8NEF9 429 aaKnown RBP15.03■□□□□ -0
USP40-206ENST00000443711 PIWIL2Q8TC59 973 aaKnown RBP15.03■□□□□ -0
USP40-206ENST00000443711 TWIST2Q8WVJ9 160 aa15.03■□□□□ -0
USP40-206ENST00000443711 F2RL3Q96RI0 385 aa15.03■□□□□ -0
USP40-206ENST00000443711 CCT7Q99832 543 aa15.03■□□□□ -0
USP40-206ENST00000443711 CENPKQ9BS16 269 aa15.03■□□□□ -0
USP40-206ENST00000443711 SLC7A5P2Q9GIP4 190 aa15.03■□□□□ -0
USP40-206ENST00000443711 NRSN2Q9GZP1 204 aa15.03■□□□□ -0
USP40-206ENST00000443711 VTI1BQ9UEU0 232 aa15.03■□□□□ -0
USP40-206ENST00000443711 SRPK3Q9UPE1 567 aa15.03■□□□□ -0
USP40-206ENST00000443711 PCDHB3Q9Y5E6 796 aa15.03■□□□□ -0
USP40-206ENST00000443711 PCDHGA3Q9Y5H0 932 aa15.03■□□□□ -0
USP40-206ENST00000443711 SPTBN2O15020 2390 aa15.03■□□□□ -0
USP40-206ENST00000443711 SCN3AQ9NY46 2000 aa15.02■□□□□ -0
USP40-206ENST00000443711 PMS2P1A4D2B8 440 aa15.02■□□□□ -0
USP40-206ENST00000443711 EDF1O60869 148 aaKnown RBP15.02■□□□□ -0
USP40-206ENST00000443711 SCRG1O75711 98 aa15.02■□□□□ -0
USP40-206ENST00000443711 TNFSF15O95150 251 aa15.02■□□□□ -0
USP40-206ENST00000443711 TBX6O95947 436 aaPredicted RBP15.02■□□□□ -0
USP40-206ENST00000443711 VIMP08670 466 aaKnown RBP15.02■□□□□ -0
USP40-206ENST00000443711 KITP10721 976 aa15.02■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms