RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 BCL2A1Q16548 175 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 TMEM198Q66K66 360 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 KIAA0907Q7Z7F0 614 aaPredicted RBP6.66□□□□□ -1.34
SCN1A-204ENST00000423058 OR9A4Q8NGU2 314 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 ERVK-6Q9BXR3 956 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 DEFB126Q9BYW3 111 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 EIF2B4Q9UI10 523 aaKnown RBP6.66□□□□□ -1.34
SCN1A-204ENST00000423058 GPR34Q9UPC5 381 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 FARSAQ9Y285 508 aaKnown RBP6.66□□□□□ -1.34
SCN1A-204ENST00000423058 RPH3AQ9Y2J0 694 aaPredicted RBP6.66□□□□□ -1.34
SCN1A-204ENST00000423058 DUOX1Q9NRD9 1551 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 A0A0G2JLL6 359 aaPredicted RBP6.66□□□□□ -1.34
SCN1A-204ENST00000423058 hCG_2039718K7EN88 272 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 TGM5O43548 720 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 SNX3O60493 162 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 OR4Q2P0C623 313 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 LHCGRP22888 699 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 DLSTP36957 453 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 LIMK2P53671 638 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 OR2B6P58173 313 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 MXD1Q05195 221 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 SCGB2A2Q13296 93 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 GRK1Q15835 563 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 FLYWCH1Q4VC44 716 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 SLC36A4Q6YBV0 504 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 PRRT2Q7Z6L0 340 aaPredicted RBP6.66□□□□□ -1.34
SCN1A-204ENST00000423058 GID4Q8IVV7 300 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 OR5K1Q8NHB7 308 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 CHPT1Q8WUD6 406 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 GIMAP5Q96F15 307 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 OR1F2PQ96R84 312 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 TM9SF2Q99805 663 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 OPA3Q9H6K4 179 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 RPP14O95059 124 aaKnown RBP6.65□□□□□ -1.34
SCN1A-204ENST00000423058 OAZ2O95190 189 aa6.65□□□□□ -1.34
SCN1A-204ENST00000423058 APOL3O95236 402 aa6.65□□□□□ -1.34
SCN1A-204ENST00000423058 LYPLA2O95372 231 aa6.65□□□□□ -1.34
SCN1A-204ENST00000423058 SLC16A8O95907 504 aa6.65□□□□□ -1.34
SCN1A-204ENST00000423058 SLC2A2P11168 524 aaPredicted RBP6.65□□□□□ -1.34
SCN1A-204ENST00000423058 POU2F1P14859 743 aa6.65□□□□□ -1.34
SCN1A-204ENST00000423058 MPSTP25325 297 aa6.65□□□□□ -1.34
SCN1A-204ENST00000423058 TLE2Q04725 743 aa6.65□□□□□ -1.34
SCN1A-204ENST00000423058 CLEC12AQ5QGZ9 265 aa6.65□□□□□ -1.34
SCN1A-204ENST00000423058 CLEC6AQ6EIG7 209 aa6.65□□□□□ -1.34
SCN1A-204ENST00000423058 CREG2Q8IUH2 290 aa6.65□□□□□ -1.34
SCN1A-204ENST00000423058 IL17RCQ8NAC3 791 aa6.65□□□□□ -1.34
SCN1A-204ENST00000423058 OR5B17Q8NGF7 314 aa6.65□□□□□ -1.34
SCN1A-204ENST00000423058 OR8S1Q8NH09 359 aa6.65□□□□□ -1.34
SCN1A-204ENST00000423058 SEC14L1Q92503 715 aa6.65□□□□□ -1.34
SCN1A-204ENST00000423058 PCDHB18PQ96TA0 734 aa6.65□□□□□ -1.34
SCN1A-204ENST00000423058 PNPOQ9NVS9 261 aa6.65□□□□□ -1.34
SCN1A-204ENST00000423058 MEGF6O75095 1541 aa6.65□□□□□ -1.34
SCN1A-204ENST00000423058 VSTM2BA6NLU5 285 aa6.65□□□□□ -1.34
SCN1A-204ENST00000423058 VAMP1P23763 118 aa6.65□□□□□ -1.34
SCN1A-204ENST00000423058 GRIA1P42261 906 aa6.65□□□□□ -1.34
SCN1A-204ENST00000423058 CIR1Q86X95 450 aaPredicted RBP6.65□□□□□ -1.34
SCN1A-204ENST00000423058 GPR137CQ8N3F9 429 aa6.65□□□□□ -1.34
SCN1A-204ENST00000423058 OR4K14Q8NGD5 310 aa6.65□□□□□ -1.34
SCN1A-204ENST00000423058 SLC13A3Q8WWT9 602 aa6.65□□□□□ -1.34
SCN1A-204ENST00000423058 B3GNT5Q9BYG0 378 aa6.65□□□□□ -1.34
SCN1A-204ENST00000423058 GOLGA2P5Q9HBQ8 144 aa6.65□□□□□ -1.34
SCN1A-204ENST00000423058 FAM208AQ9UK61 1670 aaKnown RBP6.65□□□□□ -1.34
SCN1A-204ENST00000423058 UNCXA6NJT0 531 aa6.65□□□□□ -1.34
SCN1A-204ENST00000423058 DFNA5O60443 496 aa6.65□□□□□ -1.34
SCN1A-204ENST00000423058 ZNF217O75362 1048 aa6.65□□□□□ -1.34
SCN1A-204ENST00000423058 ITGB1P05556 798 aa6.65□□□□□ -1.34
SCN1A-204ENST00000423058 RORAP35398 523 aa6.65□□□□□ -1.34
SCN1A-204ENST00000423058 HNRNPKP61978 463 aaKnown RBP eCLIP6.65□□□□□ -1.34
SCN1A-204ENST00000423058 ERVK-8P63133 956 aa6.65□□□□□ -1.34
SCN1A-204ENST00000423058 SIM2Q14190 667 aaPredicted RBP6.65□□□□□ -1.34
SCN1A-204ENST00000423058 CATSPEREQ5SY80 951 aa6.65□□□□□ -1.34
SCN1A-204ENST00000423058 RAET1LQ5VY80 246 aa6.65□□□□□ -1.34
SCN1A-204ENST00000423058 KCTD18Q6PI47 426 aaPredicted RBP6.65□□□□□ -1.34
SCN1A-204ENST00000423058 CMC1Q7Z7K0 106 aa6.65□□□□□ -1.34
SCN1A-204ENST00000423058 ZNF440Q8IYI8 595 aa6.65□□□□□ -1.34
SCN1A-204ENST00000423058 NAXEQ8NCW5 288 aa6.65□□□□□ -1.34
SCN1A-204ENST00000423058 DDIT4LQ96D03 193 aa6.65□□□□□ -1.34
SCN1A-204ENST00000423058 DUSP9Q99956 384 aaKnown RBP6.65□□□□□ -1.34
SCN1A-204ENST00000423058 TREX2Q9BQ50 279 aaPredicted RBP6.65□□□□□ -1.34
SCN1A-204ENST00000423058 HDHD5Q9BXW7 423 aa6.65□□□□□ -1.34
SCN1A-204ENST00000423058 POLE4Q9NR33 117 aa6.65□□□□□ -1.34
SCN1A-204ENST00000423058 PRTFDC1Q9NRG1 225 aa6.65□□□□□ -1.34
SCN1A-204ENST00000423058 C13orf42A0A1B0GVH6 325 aa6.65□□□□□ -1.34
SCN1A-204ENST00000423058 TCRBV21S2A2A0A5A6 115 aa6.65□□□□□ -1.34
SCN1A-204ENST00000423058 ANKRD33BA6NCL7 494 aa6.65□□□□□ -1.34
SCN1A-204ENST00000423058 GGT3PA6NGU5 568 aa6.65□□□□□ -1.34
SCN1A-204ENST00000423058 EFCAB7A8K855 629 aa6.65□□□□□ -1.34
SCN1A-204ENST00000423058 BRINP1O60477 761 aa6.65□□□□□ -1.34
SCN1A-204ENST00000423058 TYRP14679 529 aa6.65□□□□□ -1.34
SCN1A-204ENST00000423058 RPL26P61254 145 aaKnown RBP6.65□□□□□ -1.34
SCN1A-204ENST00000423058 DSC3Q14574 896 aa6.65□□□□□ -1.34
SCN1A-204ENST00000423058 KDELC1Q6UW63 502 aa6.65□□□□□ -1.34
SCN1A-204ENST00000423058 CEACAM20Q6UY09 585 aa6.65□□□□□ -1.34
SCN1A-204ENST00000423058 MREGQ8N565 214 aa6.65□□□□□ -1.34
SCN1A-204ENST00000423058 TOR1AIP2Q8NFQ8 470 aa6.65□□□□□ -1.34
SCN1A-204ENST00000423058 ASB15Q8WXK1 588 aa6.65□□□□□ -1.34
SCN1A-204ENST00000423058 LRRC3Q9BY71 257 aa6.65□□□□□ -1.34
SCN1A-204ENST00000423058 TIMM8BQ9Y5J9 83 aaPredicted RBP6.65□□□□□ -1.34
SCN1A-204ENST00000423058 CDH10Q9Y6N8 788 aa6.65□□□□□ -1.34
SCN1A-204ENST00000423058 KCNJ13O60928 360 aa6.65□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms