RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 VPS29Q9UBQ0 182 aa9.49□□□□□ -0.89
SS18-203ENST00000415083 WDR37Q9Y2I8 494 aa9.49□□□□□ -0.89
SS18-203ENST00000415083 PCDH17O14917 1159 aa9.49□□□□□ -0.89
SS18-203ENST00000415083 TLL1O43897 1013 aa9.49□□□□□ -0.89
SS18-203ENST00000415083 UPK1BO75841 260 aa9.49□□□□□ -0.89
SS18-203ENST00000415083 SLCO2B1O94956 709 aa9.49□□□□□ -0.89
SS18-203ENST00000415083 CDK1P06493 297 aa9.49□□□□□ -0.89
SS18-203ENST00000415083 MPC1LP0DKB6 136 aa9.49□□□□□ -0.89
SS18-203ENST00000415083 ADORA3P0DMS8 318 aa9.49□□□□□ -0.89
SS18-203ENST00000415083 BMPR1AP36894 532 aa9.49□□□□□ -0.89
SS18-203ENST00000415083 BDKRB1P46663 353 aa9.49□□□□□ -0.89
SS18-203ENST00000415083 PPP5CP53041 499 aa9.49□□□□□ -0.89
SS18-203ENST00000415083 DGUOKQ16854 277 aa9.49□□□□□ -0.89
SS18-203ENST00000415083 MLIPQ5VWP3 458 aa9.49□□□□□ -0.89
SS18-203ENST00000415083 C19orf48Q6RUI8 117 aa9.49□□□□□ -0.89
SS18-203ENST00000415083 KLHL17Q6TDP4 642 aa9.49□□□□□ -0.89
SS18-203ENST00000415083 CAMKMTQ7Z624 323 aa9.49□□□□□ -0.89
SS18-203ENST00000415083 ATCAYQ86WG3 371 aa9.49□□□□□ -0.89
SS18-203ENST00000415083 Q8N9G6 341 aaPredicted RBP9.49□□□□□ -0.89
SS18-203ENST00000415083 ATG16L2Q8NAA4 619 aa9.49□□□□□ -0.89
SS18-203ENST00000415083 OR4K1Q8NGD4 311 aa9.49□□□□□ -0.89
SS18-203ENST00000415083 OR5M11Q96RB7 305 aa9.49□□□□□ -0.89
SS18-203ENST00000415083 C2orf49Q9BVC5 232 aaPredicted RBP9.49□□□□□ -0.89
SS18-203ENST00000415083 MTG2Q9H4K7 406 aa9.49□□□□□ -0.89
SS18-203ENST00000415083 ITM2CQ9NQX7 267 aa9.49□□□□□ -0.89
SS18-203ENST00000415083 PLCXD1Q9NUJ7 323 aa9.49□□□□□ -0.89
SS18-203ENST00000415083 ANKMY1Q9P2S6 941 aa9.49□□□□□ -0.89
SS18-203ENST00000415083 FAM8A1Q9UBU6 413 aa9.49□□□□□ -0.89
SS18-203ENST00000415083 PRAMEF33A0A0G2JMD5 474 aa9.49□□□□□ -0.89
SS18-203ENST00000415083 OR2AG2A6NM03 316 aa9.49□□□□□ -0.89
SS18-203ENST00000415083 PRAMEF10O60809 474 aa9.49□□□□□ -0.89
SS18-203ENST00000415083 PSIP1O75475 530 aaKnown RBP9.49□□□□□ -0.89
SS18-203ENST00000415083 C8GP07360 202 aa9.49□□□□□ -0.89
SS18-203ENST00000415083 IMPA1P29218 277 aa9.49□□□□□ -0.89
SS18-203ENST00000415083 UGT2B10P36537 528 aa9.49□□□□□ -0.89
SS18-203ENST00000415083 DGKEP52429 567 aa9.49□□□□□ -0.89
SS18-203ENST00000415083 NKX2-5P52952 324 aaPredicted RBP9.49□□□□□ -0.89
SS18-203ENST00000415083 DDX39BQ13838 428 aaKnown RBP9.49□□□□□ -0.89
SS18-203ENST00000415083 E2F2Q14209 437 aa9.49□□□□□ -0.89
SS18-203ENST00000415083 C22orf39Q6P5X5 142 aa9.49□□□□□ -0.89
SS18-203ENST00000415083 SPATC1Q76KD6 591 aa9.49□□□□□ -0.89
SS18-203ENST00000415083 ZNF605Q86T29 641 aa9.49□□□□□ -0.89
SS18-203ENST00000415083 PSMA8Q8TAA3 256 aa9.49□□□□□ -0.89
SS18-203ENST00000415083 CORO1BQ9BR76 489 aa9.49□□□□□ -0.89
SS18-203ENST00000415083 COPS4Q9BT78 406 aa9.49□□□□□ -0.89
SS18-203ENST00000415083 DUSP26Q9BV47 211 aa9.49□□□□□ -0.89
SS18-203ENST00000415083 ITPAQ9BY32 194 aa9.49□□□□□ -0.89
SS18-203ENST00000415083 SIAEQ9HAT2 523 aa9.49□□□□□ -0.89
SS18-203ENST00000415083 TRIM39Q9HCM9 518 aa9.49□□□□□ -0.89
SS18-203ENST00000415083 CFAP97Q9P2B7 532 aa9.49□□□□□ -0.89
SS18-203ENST00000415083 STOX2Q9P2F5 926 aaPredicted RBP9.49□□□□□ -0.89
SS18-203ENST00000415083 INSL5Q9Y5Q6 135 aa9.49□□□□□ -0.89
SS18-203ENST00000415083 NINQ8N4C6 2090 aa9.48□□□□□ -0.89
SS18-203ENST00000415083 AGAP5A6NIR3 686 aa9.48□□□□□ -0.89
SS18-203ENST00000415083 TTC36A6NLP5 189 aa9.48□□□□□ -0.89
SS18-203ENST00000415083 RFXAPO00287 272 aa9.48□□□□□ -0.89
SS18-203ENST00000415083 FFAR1O14842 300 aa9.48□□□□□ -0.89
SS18-203ENST00000415083 EPN2O95208 641 aa9.48□□□□□ -0.89
SS18-203ENST00000415083 FKBP9O95302 570 aa9.48□□□□□ -0.89
SS18-203ENST00000415083 OXSR1O95747 527 aaPredicted RBP9.48□□□□□ -0.89
SS18-203ENST00000415083 TBX6O95947 436 aaPredicted RBP9.48□□□□□ -0.89
SS18-203ENST00000415083 NTRK1P04629 796 aa9.48□□□□□ -0.89
SS18-203ENST00000415083 CTSLP07711 333 aa9.48□□□□□ -0.89
SS18-203ENST00000415083 IGFBP1P08833 259 aaPredicted RBP9.48□□□□□ -0.89
SS18-203ENST00000415083 CCR2P41597 374 aa9.48□□□□□ -0.89
SS18-203ENST00000415083 HNMTP50135 292 aa9.48□□□□□ -0.89
SS18-203ENST00000415083 CDC20Q12834 499 aa9.48□□□□□ -0.89
SS18-203ENST00000415083 CSTF3Q12996 717 aaKnown RBP9.48□□□□□ -0.89
SS18-203ENST00000415083 PPIGQ13427 754 aaKnown RBP eCLIP9.48□□□□□ -0.892e-6■■■■□ 23.1
SS18-203ENST00000415083 TP53BP2Q13625 1128 aa9.48□□□□□ -0.89
SS18-203ENST00000415083 EXOC3L2Q2M3D2 409 aa9.48□□□□□ -0.89
SS18-203ENST00000415083 HTR3DQ70Z44 454 aa9.48□□□□□ -0.89
SS18-203ENST00000415083 ARMCX6Q7L4S7 300 aa9.48□□□□□ -0.89
SS18-203ENST00000415083 HORMAD1Q86X24 394 aa9.48□□□□□ -0.89
SS18-203ENST00000415083 RAVER1Q8IY67 606 aaKnown RBP9.48□□□□□ -0.89
SS18-203ENST00000415083 APOBEC4Q8WW27 367 aaKnown RBP9.48□□□□□ -0.89
SS18-203ENST00000415083 S100ZQ8WXG8 99 aa9.48□□□□□ -0.89
SS18-203ENST00000415083 TRMT61AQ96FX7 289 aaKnown RBP9.48□□□□□ -0.89
SS18-203ENST00000415083 RAD9AQ99638 391 aa9.48□□□□□ -0.89
SS18-203ENST00000415083 FAM83CQ9BQN1 747 aa9.48□□□□□ -0.89
SS18-203ENST00000415083 FAM120CQ9NX05 1096 aaKnown RBP9.48□□□□□ -0.89
SS18-203ENST00000415083 RAPGEFL1Q9UHV5 662 aa9.48□□□□□ -0.89
SS18-203ENST00000415083 HS3ST2Q9Y278 367 aa9.48□□□□□ -0.89
SS18-203ENST00000415083 ORC6Q9Y5N6 252 aa9.48□□□□□ -0.89
SS18-203ENST00000415083 EYSQ5T1H1 3165 aa9.48□□□□□ -0.89
SS18-203ENST00000415083 LTBP2Q14767 1821 aa9.48□□□□□ -0.89
SS18-203ENST00000415083 H0YIV9 168 aa9.48□□□□□ -0.89
SS18-203ENST00000415083 ABCB1P08183 1280 aaPredicted RBP9.48□□□□□ -0.89
SS18-203ENST00000415083 PCGF2P35227 344 aa9.48□□□□□ -0.89
SS18-203ENST00000415083 ETV3P41162 512 aa9.48□□□□□ -0.89
SS18-203ENST00000415083 ST13P50502 369 aaKnown RBP9.48□□□□□ -0.89
SS18-203ENST00000415083 CCL23P55773 120 aa9.48□□□□□ -0.89
SS18-203ENST00000415083 SELENOWP63302 87 aa9.48□□□□□ -0.89
SS18-203ENST00000415083 SRSF11Q05519 484 aaKnown RBP9.48□□□□□ -0.89
SS18-203ENST00000415083 ABRQ12979 859 aa9.48□□□□□ -0.89
SS18-203ENST00000415083 SSX1Q16384 188 aa9.48□□□□□ -0.89
SS18-203ENST00000415083 XKR6Q5GH73 641 aa9.48□□□□□ -0.89
SS18-203ENST00000415083 C6orf183Q5T699 404 aa9.48□□□□□ -0.89
SS18-203ENST00000415083 ZNF770Q6IQ21 691 aaPredicted RBP9.48□□□□□ -0.89
SS18-203ENST00000415083 RETSATQ6NUM9 610 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms