RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 HAPLN3Q96S86 360 aa12.53□□□□□ -0.4
COL6A3-206ENST00000409809 WASH6PQ9NQA3 447 aa12.53□□□□□ -0.4
COL6A3-206ENST00000409809 PRKCGP05129 697 aa12.53□□□□□ -0.4
COL6A3-206ENST00000409809 ETV5P41161 510 aa12.53□□□□□ -0.4
COL6A3-206ENST00000409809 PSEN2P49810 448 aa12.53□□□□□ -0.4
COL6A3-206ENST00000409809 MYLK3Q32MK0 819 aa12.53□□□□□ -0.4
COL6A3-206ENST00000409809 CLVS2Q5SYC1 327 aa12.53□□□□□ -0.4
COL6A3-206ENST00000409809 ARL9Q6T311 187 aa12.53□□□□□ -0.4
COL6A3-206ENST00000409809 OR8J1Q8NGP2 316 aa12.53□□□□□ -0.4
COL6A3-206ENST00000409809 SLC22A17Q8WUG5 538 aa12.53□□□□□ -0.4
COL6A3-206ENST00000409809 BTN2A3PQ96KV6 586 aa12.53□□□□□ -0.4
COL6A3-206ENST00000409809 ZNF597Q96LX8 424 aa12.53□□□□□ -0.4
COL6A3-206ENST00000409809 PIH1D1Q9NWS0 290 aaKnown RBP12.53□□□□□ -0.4
COL6A3-206ENST00000409809 PRAMEF22A3QJZ6 481 aa12.52□□□□□ -0.4
COL6A3-206ENST00000409809 FAAHO00519 579 aa12.52□□□□□ -0.4
COL6A3-206ENST00000409809 ENDOUP21128 410 aaKnown RBP12.52□□□□□ -0.4
COL6A3-206ENST00000409809 RPL7AP62424 266 aaKnown RBP12.52□□□□□ -0.4
COL6A3-206ENST00000409809 AGAP7PQ5VUJ5 663 aa12.52□□□□□ -0.4
COL6A3-206ENST00000409809 ZNF550Q7Z398 422 aa12.52□□□□□ -0.4
COL6A3-206ENST00000409809 EDEM1Q92611 657 aa12.52□□□□□ -0.4
COL6A3-206ENST00000409809 CDC7O00311 574 aa12.52□□□□□ -0.4
COL6A3-206ENST00000409809 EEF1E1O43324 174 aaKnown RBP12.52□□□□□ -0.4
COL6A3-206ENST00000409809 EDNRAP25101 427 aa12.52□□□□□ -0.4
COL6A3-206ENST00000409809 RBMS1P29558 406 aaKnown RBP12.52□□□□□ -0.4
COL6A3-206ENST00000409809 WDR4P57081 412 aaKnown RBP12.52□□□□□ -0.4
COL6A3-206ENST00000409809 RANP62826 216 aaKnown RBP12.52□□□□□ -0.4
COL6A3-206ENST00000409809 MRPS5P82675 430 aaKnown RBP12.52□□□□□ -0.4
COL6A3-206ENST00000409809 CDK3Q00526 305 aa12.52□□□□□ -0.4
COL6A3-206ENST00000409809 CLEC6AQ6EIG7 209 aa12.52□□□□□ -0.4
COL6A3-206ENST00000409809 GALNT13Q8IUC8 556 aa12.52□□□□□ -0.4
COL6A3-206ENST00000409809 OR56A1Q8NGH5 318 aa12.52□□□□□ -0.4
COL6A3-206ENST00000409809 SPAM1P38567 509 aa12.52□□□□□ -0.4
COL6A3-206ENST00000409809 RPIAP49247 311 aa12.52□□□□□ -0.4
COL6A3-206ENST00000409809 CHIT1Q13231 466 aa12.52□□□□□ -0.4
COL6A3-206ENST00000409809 ABHD11Q8NFV4 315 aa12.52□□□□□ -0.4
COL6A3-206ENST00000409809 BRSK1Q8TDC3 778 aa12.52□□□□□ -0.4
COL6A3-206ENST00000409809 KCNC2Q96PR1 638 aa12.52□□□□□ -0.4
COL6A3-206ENST00000409809 AGO3Q9H9G7 860 aaKnown RBP12.52□□□□□ -0.4
COL6A3-206ENST00000409809 LYRM1O43325 122 aa12.52□□□□□ -0.41
COL6A3-206ENST00000409809 TLL1O43897 1013 aa12.52□□□□□ -0.41
COL6A3-206ENST00000409809 EEDO75530 441 aaKnown RBP12.52□□□□□ -0.41
COL6A3-206ENST00000409809 CREG1O75629 220 aa12.52□□□□□ -0.41
COL6A3-206ENST00000409809 MEF2DQ14814 521 aa12.52□□□□□ -0.41
COL6A3-206ENST00000409809 C15orf52Q6ZUT6 534 aaKnown RBP12.52□□□□□ -0.41
COL6A3-206ENST00000409809 DNAJC19Q96DA6 116 aa12.52□□□□□ -0.41
COL6A3-206ENST00000409809 TMEM121BQ9BXQ6 578 aaPredicted RBP12.52□□□□□ -0.41
COL6A3-206ENST00000409809 CLIC1O00299 241 aa12.52□□□□□ -0.41
COL6A3-206ENST00000409809 OR7A17O14581 309 aa12.52□□□□□ -0.41
COL6A3-206ENST00000409809 MAN2A2P49641 1150 aa12.52□□□□□ -0.41
COL6A3-206ENST00000409809 SMARCD3Q6STE5 483 aa12.52□□□□□ -0.41
COL6A3-206ENST00000409809 SNX29P2Q8IUI4 249 aa12.52□□□□□ -0.41
COL6A3-206ENST00000409809 ZNF34Q8IZ26 560 aa12.52□□□□□ -0.41
COL6A3-206ENST00000409809 YIPF7Q8N8F6 280 aa12.52□□□□□ -0.41
COL6A3-206ENST00000409809 RPS10P5Q9NQ39 176 aa12.52□□□□□ -0.41
COL6A3-206ENST00000409809 ZNF175Q9Y473 711 aa12.52□□□□□ -0.41
COL6A3-206ENST00000409809 C1QTNF3-AMACRE9PGA6 284 aa12.52□□□□□ -0.41
COL6A3-206ENST00000409809 CLDN11O75508 207 aa12.52□□□□□ -0.41
COL6A3-206ENST00000409809 PBX3P40426 434 aa12.52□□□□□ -0.41
COL6A3-206ENST00000409809 DSTNP60981 165 aa12.52□□□□□ -0.41
COL6A3-206ENST00000409809 HIST2H3AQ71DI3 136 aa12.52□□□□□ -0.41
COL6A3-206ENST00000409809 SLC22A11Q9NSA0 550 aa12.52□□□□□ -0.41
COL6A3-206ENST00000409809 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.52□□□□□ -0.41
COL6A3-206ENST00000409809 ASF1AQ9Y294 204 aa12.52□□□□□ -0.41
COL6A3-206ENST00000409809 KIAA0513O60268 411 aa12.52□□□□□ -0.41
COL6A3-206ENST00000409809 RNASEH2AO75792 299 aaKnown RBP12.52□□□□□ -0.41
COL6A3-206ENST00000409809 GKP32189 559 aa12.52□□□□□ -0.41
COL6A3-206ENST00000409809 CLCN7P51798 805 aa12.52□□□□□ -0.41
COL6A3-206ENST00000409809 SLC22A25Q6T423 547 aa12.52□□□□□ -0.41
COL6A3-206ENST00000409809 MYLIPQ8WY64 445 aa12.52□□□□□ -0.41
COL6A3-206ENST00000409809 CSPG4P5Q96PW8 444 aa12.52□□□□□ -0.41
COL6A3-206ENST00000409809 XYLBO75191 536 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 MLLT3P42568 568 aaPredicted RBP12.51□□□□□ -0.41
COL6A3-206ENST00000409809 NIPAL4Q0D2K0 466 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 PEX13Q92968 403 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 ABCG4Q9H172 646 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 SMCO4Q9NRQ5 59 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 TMEM248Q9NWD8 314 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 ARHGAP23Q9P227 1491 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 A8MVJ9 347 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 F5H5P2 479 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 SCAMP3O14828 347 aaKnown RBP12.51□□□□□ -0.41
COL6A3-206ENST00000409809 CETPP11597 493 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 BCKDHAP12694 445 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 HTR1EP28566 365 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 HOXC12P31275 282 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 RFX5P48382 616 aaPredicted RBP12.51□□□□□ -0.41
COL6A3-206ENST00000409809 MAP1SQ66K74 1059 aaPredicted RBP12.51□□□□□ -0.41
COL6A3-206ENST00000409809 MINDY1Q8N5J2 469 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 TOP6BLQ8N6T0 577 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 NKD1Q969G9 470 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 TMEM68Q96MH6 324 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 SLC5A7Q9GZV3 580 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 POPDC3Q9HBV1 291 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 PLEKHM1Q9Y4G2 1056 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 ZNF878C9JN71 531 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 TOR1AO14656 332 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 ERAL1O75616 437 aaKnown RBP12.51□□□□□ -0.41
COL6A3-206ENST00000409809 BEST1O76090 585 aa12.51□□□□□ -0.41
COL6A3-206ENST00000409809 CSTBP04080 98 aaKnown RBP12.51□□□□□ -0.41
COL6A3-206ENST00000409809 DLX5P56178 289 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms