RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 MMAAQ8IVH4 418 aaKnown RBP9.31□□□□□ -0.92
COL6A3-204ENST00000392003 GLYATL1Q969I3 302 aa9.31□□□□□ -0.92
COL6A3-204ENST00000392003 LRIG1Q96JA1 1093 aa9.31□□□□□ -0.92
COL6A3-204ENST00000392003 SLC6A13Q9NSD5 602 aa9.31□□□□□ -0.92
COL6A3-204ENST00000392003 THG1LQ9NWX6 298 aaKnown RBP9.31□□□□□ -0.92
COL6A3-204ENST00000392003 TMEM9Q9P0T7 183 aa9.31□□□□□ -0.92
COL6A3-204ENST00000392003 MBD1Q9UIS9 605 aaPredicted RBP9.31□□□□□ -0.92
COL6A3-204ENST00000392003 CDC14AQ9UNH5 594 aa9.31□□□□□ -0.92
COL6A3-204ENST00000392003 HCFC2Q9Y5Z7 792 aa9.31□□□□□ -0.92
COL6A3-204ENST00000392003 KCNE2Q9Y6J6 123 aa9.31□□□□□ -0.92
COL6A3-204ENST00000392003 ARHGEF33A8MVX0 844 aa9.3□□□□□ -0.92
COL6A3-204ENST00000392003 NPIPB8E9PQR5 432 aa9.3□□□□□ -0.92
COL6A3-204ENST00000392003 NRG2O14511 850 aaPredicted RBP9.3□□□□□ -0.92
COL6A3-204ENST00000392003 TSPAN6O43657 245 aa9.3□□□□□ -0.92
COL6A3-204ENST00000392003 ADH1CP00326 375 aa9.3□□□□□ -0.92
COL6A3-204ENST00000392003 HSD3B1P14060 373 aa9.3□□□□□ -0.92
COL6A3-204ENST00000392003 CEBPBP17676 345 aa9.3□□□□□ -0.92
COL6A3-204ENST00000392003 HSD3B2P26439 372 aa9.3□□□□□ -0.92
COL6A3-204ENST00000392003 PTGS2P35354 604 aa9.3□□□□□ -0.92
COL6A3-204ENST00000392003 HPCAL1P37235 193 aa9.3□□□□□ -0.92
COL6A3-204ENST00000392003 CBX5P45973 191 aa9.3□□□□□ -0.92
COL6A3-204ENST00000392003 POLR2GP62487 172 aaKnown RBP eCLIP9.3□□□□□ -0.92
COL6A3-204ENST00000392003 SNTA1Q13424 505 aa9.3□□□□□ -0.92
COL6A3-204ENST00000392003 SKIV2LQ15477 1246 aaKnown RBP9.3□□□□□ -0.92
COL6A3-204ENST00000392003 EGFLAMQ63HQ2 1017 aa9.3□□□□□ -0.92
COL6A3-204ENST00000392003 CHST15Q7LFX5 561 aaPredicted RBP9.3□□□□□ -0.92
COL6A3-204ENST00000392003 SETD9Q8NE22 299 aa9.3□□□□□ -0.92
COL6A3-204ENST00000392003 OR7A2PQ8NGA2 310 aa9.3□□□□□ -0.92
COL6A3-204ENST00000392003 REPS1Q96D71 796 aa9.3□□□□□ -0.92
COL6A3-204ENST00000392003 ZSWIM3Q96MP5 696 aa9.3□□□□□ -0.92
COL6A3-204ENST00000392003 PIP5K1AQ99755 562 aa9.3□□□□□ -0.92
COL6A3-204ENST00000392003 DHRS9Q9BPW9 319 aa9.3□□□□□ -0.92
COL6A3-204ENST00000392003 AIFM2Q9BRQ8 373 aa9.3□□□□□ -0.92
COL6A3-204ENST00000392003 MYOFQ9NZM1 2061 aa9.3□□□□□ -0.92
COL6A3-204ENST00000392003 ABCB7O75027 752 aa9.3□□□□□ -0.92
COL6A3-204ENST00000392003 NDUFS2O75306 463 aa9.3□□□□□ -0.92
COL6A3-204ENST00000392003 PPIBP23284 216 aaKnown RBP9.3□□□□□ -0.92
COL6A3-204ENST00000392003 KRT20P35900 424 aa9.3□□□□□ -0.92
COL6A3-204ENST00000392003 VIPR2P41587 438 aa9.3□□□□□ -0.92
COL6A3-204ENST00000392003 CDKN2CP42773 168 aa9.3□□□□□ -0.92
COL6A3-204ENST00000392003 TMEM115Q12893 351 aaPredicted RBP9.3□□□□□ -0.92
COL6A3-204ENST00000392003 MRPL28Q13084 256 aaKnown RBP9.3□□□□□ -0.92
COL6A3-204ENST00000392003 C6orf141Q5SZD1 244 aa9.3□□□□□ -0.92
COL6A3-204ENST00000392003 HENMT1Q5T8I9 393 aaKnown RBP9.3□□□□□ -0.92
COL6A3-204ENST00000392003 TMEM220Q6QAJ8 160 aa9.3□□□□□ -0.92
COL6A3-204ENST00000392003 DPPA4Q7L190 304 aa9.3□□□□□ -0.92
COL6A3-204ENST00000392003 SERPINA11Q86U17 422 aa9.3□□□□□ -0.92
COL6A3-204ENST00000392003 HS3ST5Q8IZT8 346 aa9.3□□□□□ -0.92
COL6A3-204ENST00000392003 CELF5Q8N6W0 485 aaKnown RBP9.3□□□□□ -0.92
COL6A3-204ENST00000392003 IPCEF1Q8WWN9 437 aaPredicted RBP9.3□□□□□ -0.92
COL6A3-204ENST00000392003 SH3KBP1Q96B97 665 aa9.3□□□□□ -0.92
COL6A3-204ENST00000392003 METTL2AQ96IZ6 378 aaKnown RBP9.3□□□□□ -0.92
COL6A3-204ENST00000392003 ZCCHC2Q9C0B9 1178 aaKnown RBP9.3□□□□□ -0.92
COL6A3-204ENST00000392003 PLGRKTQ9HBL7 147 aa9.3□□□□□ -0.92
COL6A3-204ENST00000392003 STOX2Q9P2F5 926 aaPredicted RBP9.3□□□□□ -0.92
COL6A3-204ENST00000392003 WARS2Q9UGM6 360 aaKnown RBP9.3□□□□□ -0.92
COL6A3-204ENST00000392003 PFDN2Q9UHV9 154 aa9.3□□□□□ -0.92
COL6A3-204ENST00000392003 PCDHGB3Q9Y5G1 929 aa9.3□□□□□ -0.92
COL6A3-204ENST00000392003 COL4A6Q14031 1691 aa9.3□□□□□ -0.92
COL6A3-204ENST00000392003 LOC100130705A0A1B0GUX0 176 aa9.3□□□□□ -0.92
COL6A3-204ENST00000392003 GNG14A0A1W2PPG7 69 aa9.3□□□□□ -0.92
COL6A3-204ENST00000392003 KRT87PA6NCN2 255 aa9.3□□□□□ -0.92
COL6A3-204ENST00000392003 OR5K4A6NMS3 321 aa9.3□□□□□ -0.92
COL6A3-204ENST00000392003 H3BM21 787 aa9.3□□□□□ -0.92
COL6A3-204ENST00000392003 PSIP1O75475 530 aaKnown RBP9.3□□□□□ -0.92
COL6A3-204ENST00000392003 RB1P06400 928 aa9.3□□□□□ -0.92
COL6A3-204ENST00000392003 ANXA4P09525 319 aaPredicted RBP9.3□□□□□ -0.92
COL6A3-204ENST00000392003 PRKACGP22612 351 aa9.3□□□□□ -0.92
COL6A3-204ENST00000392003 PREPP48147 710 aa9.3□□□□□ -0.92
COL6A3-204ENST00000392003 HNRNPFP52597 415 aaKnown RBP9.3□□□□□ -0.92
COL6A3-204ENST00000392003 PNLIPRP1P54315 467 aa9.3□□□□□ -0.92
COL6A3-204ENST00000392003 POU6F2P78424 691 aaPredicted RBP9.3□□□□□ -0.92
COL6A3-204ENST00000392003 IL5RAQ01344 420 aa9.3□□□□□ -0.92
COL6A3-204ENST00000392003 MOGQ16653 247 aa9.3□□□□□ -0.92
COL6A3-204ENST00000392003 VMACQ2NL98 169 aa9.3□□□□□ -0.92
COL6A3-204ENST00000392003 FNDC3BQ53EP0 1204 aaKnown RBP9.3□□□□□ -0.92
COL6A3-204ENST00000392003 CPTPQ5TA50 214 aa9.3□□□□□ -0.92
COL6A3-204ENST00000392003 ANXA8L1Q5VT79 327 aa9.3□□□□□ -0.92
COL6A3-204ENST00000392003 UBE2UQ5VVX9 321 aa9.3□□□□□ -0.92
COL6A3-204ENST00000392003 GRHL2Q6ISB3 625 aa9.3□□□□□ -0.92
COL6A3-204ENST00000392003 R3HCC1LQ7Z5L2 792 aaKnown RBP9.3□□□□□ -0.92
COL6A3-204ENST00000392003 SYTL1Q8IYJ3 562 aa9.3□□□□□ -0.92
COL6A3-204ENST00000392003 SLC22A15Q8IZD6 547 aa9.3□□□□□ -0.92
COL6A3-204ENST00000392003 RNF175Q8N4F7 328 aa9.3□□□□□ -0.92
COL6A3-204ENST00000392003 DUSP26Q9BV47 211 aa9.3□□□□□ -0.92
COL6A3-204ENST00000392003 CCDC90BQ9GZT6 254 aa9.3□□□□□ -0.92
COL6A3-204ENST00000392003 TP63Q9H3D4 680 aaPredicted RBP9.3□□□□□ -0.92
COL6A3-204ENST00000392003 MTG2Q9H4K7 406 aa9.3□□□□□ -0.92
COL6A3-204ENST00000392003 C12orf10Q9HB07 376 aa9.3□□□□□ -0.92
COL6A3-204ENST00000392003 KIF17Q9P2E2 1029 aa9.3□□□□□ -0.92
COL6A3-204ENST00000392003 NFKBIL1Q9UBC1 381 aaPredicted RBP9.3□□□□□ -0.92
COL6A3-204ENST00000392003 CORO2BQ9UQ03 480 aa9.3□□□□□ -0.92
COL6A3-204ENST00000392003 DYRK1BQ9Y463 629 aa9.3□□□□□ -0.92
COL6A3-204ENST00000392003 PCDHGA10Q9Y5H3 936 aa9.3□□□□□ -0.92
COL6A3-204ENST00000392003 MKI67P46013 3256 aaKnown RBP9.3□□□□□ -0.92
COL6A3-204ENST00000392003 PRSS47A8MTI9 375 aa9.29□□□□□ -0.92
COL6A3-204ENST00000392003 E7EQ34 232 aa9.29□□□□□ -0.92
COL6A3-204ENST00000392003 J3QRK9 145 aa9.29□□□□□ -0.92
COL6A3-204ENST00000392003 hCG_2039718K7EN88 272 aa9.29□□□□□ -0.92
COL6A3-204ENST00000392003 SH3BGRLO75368 114 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms